mRNA_M-pyrifera_M_contig12213.4551.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12213.4551.1
Unique NamemRNA_M-pyrifera_M_contig12213.4551.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12213.4551.1 vs. uniprot
Match: D8LAW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW8_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 9.810e-35
Identity = 69/79 (87.34%), Postives = 75/79 (94.94%), Query Frame = 2 
Query:    2 AVMRKGALETKLLMLVSAVQSGELDLPAYCEILRERVVRDKVLAIYLKGQKRTKEAVAVMKRMHAMEEELAGVPQEDAE 238
            +VMRKGALETKLLMLVSAVQSGELDLPAYC IL+ERVVRDKVLA+YLK +KRTKEAVAVMKR+ AMEEELAGVPQE+ E
Sbjct:  245 SVMRKGALETKLLMLVSAVQSGELDLPAYCNILKERVVRDKVLAMYLKDEKRTKEAVAVMKRIRAMEEELAGVPQEEEE 323
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BLAST of mRNA_M-pyrifera_M_contig12213.4551.1 vs. uniprot
Match: A0A6H5JQ36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ36_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 5.070e-33
Identity = 69/79 (87.34%), Postives = 75/79 (94.94%), Query Frame = 2 
Query:    2 AVMRKGALETKLLMLVSAVQSGELDLPAYCEILRERVVRDKVLAIYLKGQKRTKEAVAVMKRMHAMEEELAGVPQEDAE 238
            +VMRKGALETKLLMLVSAVQSGELDLPAYC IL+ERVVRDKVLA+YLK +KRTKEAVAVMKR+ AMEEELAGVPQE+ E
Sbjct:  828 SVMRKGALETKLLMLVSAVQSGELDLPAYCNILKERVVRDKVLAMYLKDEKRTKEAVAVMKRIRAMEEELAGVPQEEEE 906
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BLAST of mRNA_M-pyrifera_M_contig12213.4551.1 vs. uniprot
Match: A0A835ZDR7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDR7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.540e-11
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 2 
Query:    2 AVMRKGALETKLLMLVSAVQSGELDLPAYCEILRERVVRDKVLAIYLKGQKRTKEAVAVMKRMHAMEEELAGVPQED 232
            A  R+  LE KL  L  AV  GEL L  YC ++ ER  RD+VLA++L    R  EA  V +R+  ME+ELAGVP+E+
Sbjct:   39 AAARRMGLELKLRCLEGAVAGGELTLRDYCNMVAERAARDRVLALWLMRGGRAAEAKRVARRVRLMEDELAGVPEEE 115
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12213.4551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LAW8_ECTSI9.810e-3587.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQ36_9PHAE5.070e-3387.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDR7_9STRA2.540e-1148.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12213contigM-pyrifera_M_contig12213:1407..6336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size273
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12213.4551.1prot_M-pyrifera_M_contig12213.4551.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12213 1407..6335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.9480565-CDS-M-pyrifera_M_contig12213:1406..14461622815740.9480565-CDS-M-pyrifera_M_contig12213:1406..1446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12213 1407..1446 +
1692277547.5169597-CDS-M-pyrifera_M_contig12213:1406..14461692277547.5169597-CDS-M-pyrifera_M_contig12213:1406..1446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12213 1407..1446 +
1622815740.9623744-CDS-M-pyrifera_M_contig12213:3947..40311622815740.9623744-CDS-M-pyrifera_M_contig12213:3947..4031Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12213 3948..4031 +
1692277547.5258012-CDS-M-pyrifera_M_contig12213:3947..40311692277547.5258012-CDS-M-pyrifera_M_contig12213:3947..4031Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12213 3948..4031 +
1622815740.9769585-CDS-M-pyrifera_M_contig12213:6189..63351622815740.9769585-CDS-M-pyrifera_M_contig12213:6189..6335Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12213 6190..6335 +
1692277547.5341208-CDS-M-pyrifera_M_contig12213:6189..63351692277547.5341208-CDS-M-pyrifera_M_contig12213:6189..6335Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12213 6190..6335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12213.4551.1

>prot_M-pyrifera_M_contig12213.4551.1 ID=prot_M-pyrifera_M_contig12213.4551.1|Name=mRNA_M-pyrifera_M_contig12213.4551.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
CCHEEGGTGNEAPDAGVSRAVGRAGPSRVLRNLEGEGGQRQGFGDLSEGS
EANEGSGCSYEAHARYGRRTRGRSPRGRRGGRGGGVRKRG
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mRNA from alignment at M-pyrifera_M_contig12213:1407..6336+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12213.4551.1 ID=mRNA_M-pyrifera_M_contig12213.4551.1|Name=mRNA_M-pyrifera_M_contig12213.4551.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4930bp|location=Sequence derived from alignment at M-pyrifera_M_contig12213:1407..6336+ (Macrocystis pyrifera P11B4 male)
TGCTGTCATGAGGAAGGGGGCACTGGAAACGAAGCTCCTGGTGAGACAGG
GACGGAGGGACGGGAGGGAGGGAGGGAGGGGAAGAGGGGAGGGGAGGGGG
GGGGAGGAGCGTTCTCAGTTGCTGCTTGCCTTAGTCGTTTGACCATTGAC
CATTGACCACGCATCCCTTTTGAGACGGAGCAGGGAGGGAGGGGGTAACA
AGAATATGGGGAGGGAAAAGGAGACGTAAATGGCGACAGCGAGGGCAGAG
AGAGACGGGGACAAGCGGGAGGCGGGAAAGTCGATCGACGGAAAAGGGCT
ACTGCTGTAGATAGGACCGGCGACCCGTTATGGCCCGACCAGGCTCGATG
GAACTCGGGTATGGTGTAGTTCTCAACCCGACCCAACCCGACCCGCACAG
TCTCCTCTGTGCACCATTTATGCTGTCTCGAGACATGGCCGAGGGATGCG
GTAGCGGTTTGTACGATAAGCAGGGAAGCGATTGTTTAAGGTTGCCAAGG
GGACTATTCTTCATAATAGTAATATGTTTAGATTTCTTGTTTGAGGAAAC
GACAGGTATTTGTTTTTTTGCTTTTTTAGGTGACGATACGAGCTGGCCCC
AGCGACACCCATAAAATCCCACCTTCGGGCAATGAAACAATGAATACACT
GAAAATCACAGCATAAAGCGTCAACCAGGGGAATACATCGGTGAAAGCTG
GTTTTGGCGTGCGAGTTGTAGTTGGTGAGATACGGGAATTGTTGGTACTT
TTTGGGGAGGTTGCGTTGTTGCATAGGGATTCAAGGGGTCTATGGTAGCA
TCCATTTGGTTCTTCCTTAGGCCTTAAAATCGGCCAAGGCGTGGAATCAT
TCGATACTATTAATAGACTTGTTGACATATTTGCATCAATAGGGATAAAT
CGCTCGTGACACTTGTTTTGTTCGGCGAGCCGTACAAGGCTGTTCAAAGA
AACGCCTGCCAAAGTACTTGAACAATGCACTGAGCTCTTGGAACCCTAGG
GGAACTTTTTACTTTTTTCAGAAATCACCTTTGCCTCCTTGTAGAGAACG
AGTTGGAAAACGAAATTTGGCAGGGGGGTGTTTTTCATGACCATAAGAAG
AAACACAACATTGGCCTTTTTTTTTTTTTTTATCTGTTCGTCGGTGAGTT
TCGGTCAATCTTGCCCAATATATATATATTTTTAAACACAGTCAAGCGTG
CAAAAAAAAGAAAAAAAAAAAAAAAAAATCAAAAAGGCCAATATGTCGTT
TTTTTCGTCATGGCCAATATGCCGTTTTCCAACTCGTTTTCTTCAAGGGT
GGAAAAGTTTGAGGACGGAAAAGTTCCGGCTTTCGCTGGAACCAGCACGT
TCGTTTTGTATTTCGCTTTTTGGAGACAACATGGTACTATACCAGGTATA
TTTATATAGCAAGGGTACACAGGAAACAAAAAAATTGACACCGCACTTTA
TTTTCTGAGTCCCAGACAGGGGGGTACGCTCAAATCAAGTAAAATGAACG
ACGAAACAACATATTTTATTTAATTTTTGACGAAAAGCCCAACCCGATTT
TTTTTGTTTTCAATTCCGACATGGTGTCGAGTGCGGCTCCGTTCTCTCGT
TTTTTCGTATACCCTGTTATATGTACCAGGTATAACGGGGGACCATAGTA
AATAGGACATACGATACACACAAAAACCTACCAGGTATATATTTTCCTTT
TTTTATTTTTTACTAACAATAGTTGGTCCTGTTTACTATGGTCCCCCGTA
CAAGTTTTTTTTTTCGAAGGAGACGATATACTGCTGTAAATATATAGTTT
TAGGAGACGAAATCTGTGTTTTTTTTCGGGACATGATACACCTGGTATAT
GGTACTTGCACCTTTTTTTTTTTCAAGTATAATGGGATGATGGCAATTCT
TGTCTCCTGGGGCGTGGCGTGCTGCCTCGTATTGGGTCGTGTGCTATATG
CGCCCTGTTTTTCCTCTCGCCGCCTCGGCCGAGCACTCGGACGGACCGCG
CGGCGTTGCTGCTCGCCAGGGCGAAAAAACAAAAAAACAGAGACGAAGAA
AGAAAATGAAGACGGATAATCGTCGAAGCGTGTACGAAGCTCACCTACAG
CCTGCCGCCAACTTCGTGATTCTCCTTTGCCGGCTTGCTGTGATCTATCT
TGGTGATAGCGCTGACACTAATATCGAGATTAGTGTGGGTGACGTGGTGG
GGCCGTGATGTCTGTCGAAGGTGTGCCCAAACTGGCCGAAAGTAGCAGGG
GGTATAGGGGATGATACTTGATGCTTGATGATATTCTTGGTATCAAATTT
ATCAACAATATACGCAAAAAACGAGAAAGATGGAATGTACCAGTAAAGAA
GGGGGATTTTTTTTTTTTTTTTTTTTTCTGAATTCGCGGAGACGGAATCC
AAGCTGATGGAGGTGTTGCGTCGAGAGCGCATACGCATGCGCTTAATGAA
TGAAAGGTCCCTTTTTATTTGTTCGTTCGTCGTTTGTTCAGTTTTCTCTT
CTTTTTTTACGTTCCCATCGGTCACACGCGGCAAAAAACAGATGCTGGTG
TCAGCCGTGCAGTCGGGCGAGCTGGACCTTCCCGCGTACTGCGAAATCTT
GAGGGAGAGGGTGGTCAGAGACAAGGTGAGCTTAAAAGCGAGCGCGGGGA
GGGGGAGGTGAGACGTCGCTGTTGATAGTCTATTTCCTGTAGTGCGGAGG
TAGAGTAAAAGTAAATCACGCGCGACGGTCGTGACCTATGTTTGTTGCTG
TGTTTGCTGTGTTTGCTGTGTCCGTTGTGTTTGTTGTTGTGTTTGCTGTG
TTTTTTTGCTTGTTGCGTGTTTGTTTGTTTTTCGGTTTCCTCCCTCTGCT
GGCCCAATTTCCTCACCGACTGCTATCATACGCATGCAAACTTCATGGGT
TCGGCGCCCATCGACCATCATGCCCACCTCGTCCGTCCGTGCTGGGAGGC
TGCTCGCGCTGCAGCCCAAGGCAGGCATTCGATCCTTCGGACCAGTCCAA
TACAAACGAATACTTCGCGCGGGGCGCTCACTCCCTGTCGTGCGCTTGCG
AAGTCCTCATTTAGGTCCTTGGAGTGGGGTCCGAAGGACTTCGACAGGCC
GAAGGAACGCCTCGGGCAGCAGCGCGAGGATTTCCTCGCCACCTTGCTTA
ACCCTCTTATTGATGGTGCTGCAGTCCTGTTTTGGGGGGGACAAAGTACT
TAGAAATTGAGGGGTTTTGTCCCCCCAACGGGACTGCAGTTTGCCCTGTT
ACGGAGGACCAGAGTAAATAGGACCAAATATTGTGAGTAAAAATAGGCAA
ATGTATAGGCTTTTATGTATACCGTATGTCCTATTAACCATTGACCCCCG
TAATAGCAGGGTCAACAGGATGGGCAAGGTTTCACACGTAGCGGACAGAT
CATCTACAGATAGATCATGTACAGATAGATCATCTACAGATAGATCATCT
GCAGATAGATCATTACAGATAGATCATCCACAGATGGATCATCCACAGAT
AGATCATCCACAGATATATCATCTACAGACAGATAATCCACAGATAGATC
AGATAGATTATCTACAGGTAGATCAGATAGATCATGTACAGATAGATCAT
CTACAGATAGATCATCTACAGATAGAACATCTACAGATAGATCATCCACA
GATGGATCATCCACAGATGGATCATCCACAGATAGATCCTCCACAGATAG
ATCATCCACAGATAGATCATCTACAGATAGATCAGATAGATTATCTACAG
GTAGATCAGATAGATCATCTACAGGTAGATTATCTACAGATAGAACATAT
AGATTATCTACAGATAGATCAGATAGATTATCTACAGGTAGATCATCTAC
AGATAGATCAGATAGATTATACACATGTAGATCACCTGCAGATAGAGCAT
ATATATCATCTACAGATAGATACTAACTCGCCGTCAAGAGAGGCTGTGCG
GAATCTTTGTAGTACAGATCCAACCCAGGAAGCATGTATATACTACTGTG
CGTAGATGATGCAGATTACACGGGTCCCACCCGGCAATATGAGCTGGATC
ATACAGATCATAGCGATCATACATATATCTGCTTTGAACGATCTAGGTCA
CGAAATGTGGGTAGGGATGCGTGTCTGTCCCACGTGTGCAAGGTTTCACA
GCTCTCACAGATGACGATCTATCTATCTACGGCAGATCATCCACAGCAGA
TCATGATCTGTAGATGATCTAGTTCCTCACCCGCCGTTGGGAGAGGTTGT
AAAGGACCTGCGTATGTAGGAAGCACGTGCTATTAGTAGATCATGCAGGT
TTACGGCTCCCACCCGGCAACATGAGCTAGATCATACAGATCATACATAT
ATCTGCCTTGAATGATCTAGATCATGAACTGTCTGTGGGAATAAATGCTA
TGTCCCACGTGCGCAAGGTTTCACACCGACAGATCAGACCCCTACTTCAT
GATCTAAATATTTCGGGGGAGATAGATTAGATGCCTGATTTAACTCATAC
GATCTGCACGGTCTAAATCATGATTGGCGGGTGGGGTTTGTATGACTACT
ATTGACTTTTTTGTGCACATACACTGAACCATTCGCCGGGTGGGATCTAT
GTACCTGGTGTATGATTCGGCTCTTGCACATTTTTTTTTTGCGAAAACGC
CTGCTTTTTTTTTTTCTTTCAAAATCACCTTCCGTTCGTTTTTTTCCAAC
ACCGCCCACGTACGTCTCGCTTTATTTAAAAACAACTACTTTTTTTTGTG
CAAAAACGCTTCCCCACTTGTGTGCAAAACCAGGTTTTGGCGATCTATCT
GAAGGGTCAGAAGCGAACGAAGGAAGCGGTTGCAGTTATGAAGCGCATGC
ACGCTATGGAAGAAGAACTCGCGGGCGTTCCCCAAGAGGACGCCGAGGGG
GAAGAGGAGGCGGCGTGAGGAAGAGGGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12213:1407..6336+

>mRNA_M-pyrifera_M_contig12213.4551.1 ID=mRNA_M-pyrifera_M_contig12213.4551.1|Name=mRNA_M-pyrifera_M_contig12213.4551.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig12213:1407..6336+ (Macrocystis pyrifera P11B4 male)
TGCTGTCATGAGGAAGGGGGCACTGGAAACGAAGCTCCTGTGCTGTCATG
AGGAAGGGGGCACTGGAAACGAAGCTCCTGATGCTGGTGTCAGCCGTGCA
GTCGGGCGAGCTGGACCTTCCCGCGTACTGCGAAATCTTGAGGGAGAGGG
TGGTCAGAGACAAGATGCTGGTGTCAGCCGTGCAGTCGGGCGAGCTGGAC
CTTCCCGCGTACTGCGAAATCTTGAGGGAGAGGGTGGTCAGAGACAAGGT
TTTGGCGATCTATCTGAAGGGTCAGAAGCGAACGAAGGAAGCGGTTGCAG
TTATGAAGCGCATGCACGCTATGGAAGAAGAACTCGCGGGCGTTCCCCAA
GAGGACGCCGAGGGGGAAGAGGAGGCGGCGTGAGGAAGAGGGGAGTTTTG
GCGATCTATCTGAAGGGTCAGAAGCGAACGAAGGAAGCGGTTGCAGTTAT
GAAGCGCATGCACGCTATGGAAGAAGAACTCGCGGGCGTTCCCCAAGAGG
ACGCCGAGGGGGAAGAGGAGGCGGCGTGAGGAAGAGGGGA
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