mRNA_M-pyrifera_M_contig122053.4545.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122053.4545.1
Unique NamemRNA_M-pyrifera_M_contig122053.4545.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122053.4545.1 vs. uniprot
Match: A0A0V0XUB3_TRIPS (Thioredoxin-like protein n=2 Tax=Ecdysozoa TaxID=1206794 RepID=A0A0V0XUB3_TRIPS)

HSP 1 Score: 199 bits (506), Expect = 3.030e-63
Identity = 87/135 (64.44%), Postives = 113/135 (83.70%), Query Frame = 1
Query:   52 MAFLLPTCKSGWEVDKAIISEDERVVVIRFGRAWEPTCMVNDEALAKIAEKVKKFAVIYLVDNSEVTDFNEMYELTDPCSVMFFVRNKQMMVDLGTGDNNRVNFPISEPSEWIDLLETLYRGGNKGKGLVISPKD 456
            M+++LP   +GW+VD+AI+SE++RVVVIRFG  W+PTCM  DE L KIAEKVK FAVIYLVD ++V DFN+MYEL DPC+ MFF RNK +M+DLGTG+NN++N+ + +P E ID++ET+YRG  KG+GLVISPKD
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLFKIAEKVKNFAVIYLVDITQVPDFNKMYELYDPCTTMFFFRNKHIMIDLGTGNNNKINWALEDPQECIDIIETIYRGARKGRGLVISPKD 135          
BLAST of mRNA_M-pyrifera_M_contig122053.4545.1 vs. uniprot
Match: A0A6A0HGR7_HYAAZ (Thioredoxin-like protein n=2 Tax=Pancrustacea TaxID=197562 RepID=A0A6A0HGR7_HYAAZ)

HSP 1 Score: 198 bits (503), Expect = 8.660e-63
Identity = 86/135 (63.70%), Postives = 112/135 (82.96%), Query Frame = 1
Query:   52 MAFLLPTCKSGWEVDKAIISEDERVVVIRFGRAWEPTCMVNDEALAKIAEKVKKFAVIYLVDNSEVTDFNEMYELTDPCSVMFFVRNKQMMVDLGTGDNNRVNFPISEPSEWIDLLETLYRGGNKGKGLVISPKD 456
            M+++L    +GW+VD+AI+SE++R VVIRFG  W+P CMV DE L  IAEKVK FAVIYLVD +EV DFN+MYEL DPC++MFF RNK +M+DLGTG+NN++N+P+ +P E ID+LET+YRG  KG+GLV+SPKD
Sbjct:    1 MSYMLQHLHNGWQVDQAILSEEDRCVVIRFGHDWDPQCMVMDEVLYNIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTIMFFFRNKHIMIDLGTGNNNKINWPLEDPQEMIDILETVYRGARKGRGLVVSPKD 135          
BLAST of mRNA_M-pyrifera_M_contig122053.4545.1 vs. uniprot
Match: A0A7S4LMZ2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LMZ2_9EUGL)

HSP 1 Score: 198 bits (503), Expect = 1.020e-62
Identity = 90/135 (66.67%), Postives = 111/135 (82.22%), Query Frame = 1
Query:   52 MAFLLPTCKSGWEVDKAIISEDERVVVIRFGRAWEPTCMVNDEALAKIAEKVKKFAVIYLVDNSEVTDFNEMYELTDPCSVMFFVRNKQMMVDLGTGDNNRVNFPISEPSEWIDLLETLYRGGNKGKGLVISPKD 456
            MA+LLP   SGW VD+AI++E+E+VVVIRFG  W+P CM  DE LA IAEKVK FAV+YLVD SEV DFN+MYEL DP +VMFF RNK MM+DLGTG+NN++N+P++   E ID++ET+YRG  KG+GLVISPKD
Sbjct:    6 MAYLLPHLHSGWAVDQAILAEEEKVVVIRFGHDWDPQCMEMDETLASIAEKVKNFAVVYLVDISEVPDFNKMYELYDPVTVMFFFRNKHMMIDLGTGNNNKINWPMNNKQEMIDIVETVYRGARKGRGLVISPKD 140          
BLAST of mRNA_M-pyrifera_M_contig122053.4545.1 vs. uniprot
Match: U6J310_ECHGR (Thioredoxin-like protein n=75 Tax=Bilateria TaxID=33213 RepID=U6J310_ECHGR)

HSP 1 Score: 197 bits (502), Expect = 1.230e-62
Identity = 84/135 (62.22%), Postives = 115/135 (85.19%), Query Frame = 1
Query:   52 MAFLLPTCKSGWEVDKAIISEDERVVVIRFGRAWEPTCMVNDEALAKIAEKVKKFAVIYLVDNSEVTDFNEMYELTDPCSVMFFVRNKQMMVDLGTGDNNRVNFPISEPSEWIDLLETLYRGGNKGKGLVISPKD 456
            M+++L    +GW+VD+AI+SE++RVV+IRFG  W+P+CMV DE L ++AEK+K FAVIYLVD S+V DFN+MYEL DPC+VMFF RNK +M+DLGTG+NN++N+PI +  E+ID++ET+YRG  KG+GLV+SPKD
Sbjct:    1 MSYMLAHLTNGWQVDQAILSEEDRVVIIRFGHDWDPSCMVMDETLFQVAEKIKNFAVIYLVDISQVPDFNKMYELYDPCTVMFFYRNKHIMIDLGTGNNNKINWPIEDKQEFIDIVETVYRGARKGRGLVVSPKD 135          
BLAST of mRNA_M-pyrifera_M_contig122053.4545.1 vs. uniprot
Match: A0A183J7V8_9BILA (Thioredoxin-like protein n=17 Tax=Dorylaimia TaxID=1457286 RepID=A0A183J7V8_9BILA)

HSP 1 Score: 197 bits (501), Expect = 1.750e-62
Identity = 86/135 (63.70%), Postives = 113/135 (83.70%), Query Frame = 1
Query:   52 MAFLLPTCKSGWEVDKAIISEDERVVVIRFGRAWEPTCMVNDEALAKIAEKVKKFAVIYLVDNSEVTDFNEMYELTDPCSVMFFVRNKQMMVDLGTGDNNRVNFPISEPSEWIDLLETLYRGGNKGKGLVISPKD 456
            M+++LP   +GW+VD+AI+SE++RVVVIRFG  W+PTCM  DE L KIAEKVK FA +YLVD S+V DFN+MYEL DPC++MFF RNK +M+DLGTG+NN++N+ + +P E ID++ET+YRG  KG+GLVISPKD
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDETLFKIAEKVKNFASVYLVDISQVQDFNKMYELYDPCTLMFFFRNKHIMIDLGTGNNNKINWALEDPQEAIDIIETVYRGARKGRGLVISPKD 135          
BLAST of mRNA_M-pyrifera_M_contig122053.4545.1 vs. uniprot
Match: A0A6J0HQR1_9PASS (thioredoxin-like protein 4A isoform X2 n=1 Tax=Lepidothrix coronata TaxID=321398 RepID=A0A6J0HQR1_9PASS)

HSP 1 Score: 198 bits (503), Expect = 2.790e-62
Identity = 87/136 (63.97%), Postives = 113/136 (83.09%), Query Frame = 1
Query:   49 RMAFLLPTCKSGWEVDKAIISEDERVVVIRFGRAWEPTCMVNDEALAKIAEKVKKFAVIYLVDNSEVTDFNEMYELTDPCSVMFFVRNKQMMVDLGTGDNNRVNFPISEPSEWIDLLETLYRGGNKGKGLVISPKD 456
            RM+++LP   +GW+VD+AI+SE++RVVVIRFG  W+PTCM  DE L  IAEKVK FAVIYLVD +EV DFN+MYEL DPC+VMFF RNK +M+DLGTG+NN++N+ + +  E ID++ET+YRG  KG+GLV+SPKD
Sbjct:   36 RMSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMIDIIETVYRGARKGRGLVVSPKD 171          
BLAST of mRNA_M-pyrifera_M_contig122053.4545.1 vs. uniprot
Match: A0A6J0HRV9_9PASS (thioredoxin-like protein 4A isoform X1 n=6 Tax=Pipridae TaxID=114313 RepID=A0A6J0HRV9_9PASS)

HSP 1 Score: 198 bits (503), Expect = 3.170e-62
Identity = 87/136 (63.97%), Postives = 113/136 (83.09%), Query Frame = 1
Query:   49 RMAFLLPTCKSGWEVDKAIISEDERVVVIRFGRAWEPTCMVNDEALAKIAEKVKKFAVIYLVDNSEVTDFNEMYELTDPCSVMFFVRNKQMMVDLGTGDNNRVNFPISEPSEWIDLLETLYRGGNKGKGLVISPKD 456
            RM+++LP   +GW+VD+AI+SE++RVVVIRFG  W+PTCM  DE L  IAEKVK FAVIYLVD +EV DFN+MYEL DPC+VMFF RNK +M+DLGTG+NN++N+ + +  E ID++ET+YRG  KG+GLV+SPKD
Sbjct:   40 RMSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMIDIIETVYRGARKGRGLVVSPKD 175          
BLAST of mRNA_M-pyrifera_M_contig122053.4545.1 vs. uniprot
Match: Q8SZ87_DROME (Thioredoxin-like protein n=95 Tax=Bilateria TaxID=33213 RepID=Q8SZ87_DROME)

HSP 1 Score: 196 bits (499), Expect = 3.520e-62
Identity = 85/135 (62.96%), Postives = 112/135 (82.96%), Query Frame = 1
Query:   52 MAFLLPTCKSGWEVDKAIISEDERVVVIRFGRAWEPTCMVNDEALAKIAEKVKKFAVIYLVDNSEVTDFNEMYELTDPCSVMFFVRNKQMMVDLGTGDNNRVNFPISEPSEWIDLLETLYRGGNKGKGLVISPKD 456
            M+++LP   +GW+VD+AI+SE++RVVVIRFG  W+P CM  DE +  IAEKVK FAVIYLVD +EV DFN+MYEL DPC+VMFF RNK +M+DLGTG+NN++N+P+ +  E ID++ET+YRG  KG+GLV+SPKD
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPACMKMDEVMYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIVETVYRGARKGRGLVVSPKD 135          
BLAST of mRNA_M-pyrifera_M_contig122053.4545.1 vs. uniprot
Match: A0A182G8J6_AEDAL (Thioredoxin-like protein n=15 Tax=Endopterygota TaxID=33392 RepID=A0A182G8J6_AEDAL)

HSP 1 Score: 196 bits (499), Expect = 3.520e-62
Identity = 86/135 (63.70%), Postives = 112/135 (82.96%), Query Frame = 1
Query:   52 MAFLLPTCKSGWEVDKAIISEDERVVVIRFGRAWEPTCMVNDEALAKIAEKVKKFAVIYLVDNSEVTDFNEMYELTDPCSVMFFVRNKQMMVDLGTGDNNRVNFPISEPSEWIDLLETLYRGGNKGKGLVISPKD 456
            M+++L    +GW+VD+AI+SE++RVVVIRFG  W+PTCM  DE L  IAEKVK FAVIYLVD +EV DFN+MYEL DPC+VMFF RNK +M+DLGTG+NN++N+P+ +  E ID++ET+YRG  KG+GLV+SPKD
Sbjct:    1 MSYMLAHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKD 135          
BLAST of mRNA_M-pyrifera_M_contig122053.4545.1 vs. uniprot
Match: A0A0L8H9X6_OCTBM (Thioredoxin-like protein n=22 Tax=Protostomia TaxID=33317 RepID=A0A0L8H9X6_OCTBM)

HSP 1 Score: 196 bits (499), Expect = 3.520e-62
Identity = 85/135 (62.96%), Postives = 113/135 (83.70%), Query Frame = 1
Query:   52 MAFLLPTCKSGWEVDKAIISEDERVVVIRFGRAWEPTCMVNDEALAKIAEKVKKFAVIYLVDNSEVTDFNEMYELTDPCSVMFFVRNKQMMVDLGTGDNNRVNFPISEPSEWIDLLETLYRGGNKGKGLVISPKD 456
            M+++LP   +GW+VD+AI+SE++RVVVIRFG  W+PTCMV DE L K AEK+K F VIYLVD +EV DFN+MYEL DPC+VMFF RNK +M+DLGTG+NN++N+ + +  E+ID++ET+YRG  KG+GLV+SPKD
Sbjct:    1 MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMVMDEVLYKCAEKIKNFVVIYLVDITEVPDFNKMYELYDPCTVMFFYRNKHIMIDLGTGNNNKINWALEDCQEFIDIVETVYRGARKGRGLVVSPKD 135          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122053.4545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0V0XUB3_TRIPS3.030e-6364.44Thioredoxin-like protein n=2 Tax=Ecdysozoa TaxID=1... [more]
A0A6A0HGR7_HYAAZ8.660e-6363.70Thioredoxin-like protein n=2 Tax=Pancrustacea TaxI... [more]
A0A7S4LMZ2_9EUGL1.020e-6266.67Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
U6J310_ECHGR1.230e-6262.22Thioredoxin-like protein n=75 Tax=Bilateria TaxID=... [more]
A0A183J7V8_9BILA1.750e-6263.70Thioredoxin-like protein n=17 Tax=Dorylaimia TaxID... [more]
A0A6J0HQR1_9PASS2.790e-6263.97thioredoxin-like protein 4A isoform X2 n=1 Tax=Lep... [more]
A0A6J0HRV9_9PASS3.170e-6263.97thioredoxin-like protein 4A isoform X1 n=6 Tax=Pip... [more]
Q8SZ87_DROME3.520e-6262.96Thioredoxin-like protein n=95 Tax=Bilateria TaxID=... [more]
A0A182G8J6_AEDAL3.520e-6263.70Thioredoxin-like protein n=15 Tax=Endopterygota Ta... [more]
A0A0L8H9X6_OCTBM3.520e-6262.96Thioredoxin-like protein n=22 Tax=Protostomia TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122053contigM-pyrifera_M_contig122053:2..457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score198.0
Seed ortholog evalue3.2e-48
Seed eggNOG ortholog7209.EFO25485.1
KEGG koko:K12859
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitosis protein DIM1
EggNOG OGs1KVEC@119089,39ZUC@33154,3BAI4@33208,3CXF0@33213,40CUT@6231,KOG3414@1,KOG3414@2759
COG Functional cat.AD
Best tax levelChromadorea
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons1
Model size456
Cds size456
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.6657991-CDS-M-pyrifera_M_contig122053:1..4571622815740.6657991-CDS-M-pyrifera_M_contig122053:1..457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122053 2..457 -
1692277547.4011147-CDS-M-pyrifera_M_contig122053:1..4571692277547.4011147-CDS-M-pyrifera_M_contig122053:1..457Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122053 2..457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122053.4545.1prot_M-pyrifera_M_contig122053.4545.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122053 2..457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122053.4545.1

>prot_M-pyrifera_M_contig122053.4545.1 ID=prot_M-pyrifera_M_contig122053.4545.1|Name=mRNA_M-pyrifera_M_contig122053.4545.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
MQSQSKLALRCSLMQNRMAFLLPTCKSGWEVDKAIISEDERVVVIRFGRA
WEPTCMVNDEALAKIAEKVKKFAVIYLVDNSEVTDFNEMYELTDPCSVMF
FVRNKQMMVDLGTGDNNRVNFPISEPSEWIDLLETLYRGGNKGKGLVISP
KD
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mRNA from alignment at M-pyrifera_M_contig122053:2..457-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122053.4545.1 ID=mRNA_M-pyrifera_M_contig122053.4545.1|Name=mRNA_M-pyrifera_M_contig122053.4545.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig122053:2..457- (Macrocystis pyrifera P11B4 male)
ATGCAATCACAATCCAAACTCGCTCTACGTTGTTCCTTGATGCAGAACAG GATGGCTTTCTTGTTGCCAACGTGTAAGTCGGGGTGGGAAGTGGACAAAG CGATCATTTCGGAGGACGAACGGGTTGTAGTGATTCGGTTTGGACGGGCT TGGGAGCCGACATGTATGGTGAATGACGAGGCATTGGCGAAAATTGCAGA AAAGGTCAAGAAGTTTGCGGTGATCTATTTGGTGGACAATTCAGAGGTCA CGGATTTCAACGAAATGTATGAGCTCACAGACCCGTGCTCTGTCATGTTT TTCGTGCGTAATAAGCAGATGATGGTTGACTTAGGCACTGGAGATAACAA TCGTGTCAATTTCCCAATTTCCGAGCCATCCGAATGGATTGACCTCCTTG AAACACTTTACCGTGGAGGTAATAAAGGAAAAGGGCTGGTGATTAGCCCC AAGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122053:2..457-

>mRNA_M-pyrifera_M_contig122053.4545.1 ID=mRNA_M-pyrifera_M_contig122053.4545.1|Name=mRNA_M-pyrifera_M_contig122053.4545.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig122053:2..457- (Macrocystis pyrifera P11B4 male)
ATGCAATCACAATCCAAACTCGCTCTACGTTGTTCCTTGATGCAGAACAG
GATGGCTTTCTTGTTGCCAACGTGTAAGTCGGGGTGGGAAGTGGACAAAG
CGATCATTTCGGAGGACGAACGGGTTGTAGTGATTCGGTTTGGACGGGCT
TGGGAGCCGACATGTATGGTGAATGACGAGGCATTGGCGAAAATTGCAGA
AAAGGTCAAGAAGTTTGCGGTGATCTATTTGGTGGACAATTCAGAGGTCA
CGGATTTCAACGAAATGTATGAGCTCACAGACCCGTGCTCTGTCATGTTT
TTCGTGCGTAATAAGCAGATGATGGTTGACTTAGGCACTGGAGATAACAA
TCGTGTCAATTTCCCAATTTCCGAGCCATCCGAATGGATTGACCTCCTTG
AAACACTTTACCGTGGAGGTAATAAAGGAAAAGGGCTGGTGATTAGCCCC
AAGGACATGCAATCACAATCCAAACTCGCTCTACGTTGTTCCTTGATGCA
GAACAGGATGGCTTTCTTGTTGCCAACGTGTAAGTCGGGGTGGGAAGTGG
ACAAAGCGATCATTTCGGAGGACGAACGGGTTGTAGTGATTCGGTTTGGA
CGGGCTTGGGAGCCGACATGTATGGTGAATGACGAGGCATTGGCGAAAAT
TGCAGAAAAGGTCAAGAAGTTTGCGGTGATCTATTTGGTGGACAATTCAG
AGGTCACGGATTTCAACGAAATGTATGAGCTCACAGACCCGTGCTCTGTC
ATGTTTTTCGTGCGTAATAAGCAGATGATGGTTGACTTAGGCACTGGAGA
TAACAATCGTGTCAATTTCCCAATTTCCGAGCCATCCGAATGGATTGACC
TCCTTGAAACACTTTACCGTGGAGGTAATAAAGGAAAAGGGCTGGTGATT
AGCCCCAAGGAC
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