mRNA_M-pyrifera_M_contig12195.4509.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12195.4509.1
Unique NamemRNA_M-pyrifera_M_contig12195.4509.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12195.4509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12195contigM-pyrifera_M_contig12195:988..1770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size783
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12195.4509.1prot_M-pyrifera_M_contig12195.4509.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12195 1233..1670 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.5166225-UTR-M-pyrifera_M_contig12195:987..12321622815738.5166225-UTR-M-pyrifera_M_contig12195:987..1232Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12195 988..1232 +
1692277546.2107987-UTR-M-pyrifera_M_contig12195:987..12321692277546.2107987-UTR-M-pyrifera_M_contig12195:987..1232Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12195 988..1232 +
1622815738.541361-UTR-M-pyrifera_M_contig12195:1670..17701622815738.541361-UTR-M-pyrifera_M_contig12195:1670..1770Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12195 1671..1770 +
1692277546.2309089-UTR-M-pyrifera_M_contig12195:1670..17701692277546.2309089-UTR-M-pyrifera_M_contig12195:1670..1770Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12195 1671..1770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.5297523-CDS-M-pyrifera_M_contig12195:1232..16701622815738.5297523-CDS-M-pyrifera_M_contig12195:1232..1670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12195 1233..1670 +
1692277546.2215235-CDS-M-pyrifera_M_contig12195:1232..16701692277546.2215235-CDS-M-pyrifera_M_contig12195:1232..1670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12195 1233..1670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12195.4509.1

>prot_M-pyrifera_M_contig12195.4509.1 ID=prot_M-pyrifera_M_contig12195.4509.1|Name=mRNA_M-pyrifera_M_contig12195.4509.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MVVLCDMCCMFWAHAVGHMTRACTDQLRRNRCPDAYDPDQIGFVDQITSF
YKETSCVRCPSLDHVAVSIFDPIRLARRAPQFIVWLRACDCRSYARFSCG
PRTDEITECVNFYLRYCVQLYRNVAYPYNTSGAVASSMLNIDRIW*
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mRNA from alignment at M-pyrifera_M_contig12195:988..1770+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12195.4509.1 ID=mRNA_M-pyrifera_M_contig12195.4509.1|Name=mRNA_M-pyrifera_M_contig12195.4509.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=783bp|location=Sequence derived from alignment at M-pyrifera_M_contig12195:988..1770+ (Macrocystis pyrifera P11B4 male)
GTCGAAAGCCCGCTGACGATGCTCCTTTAGCGGCGCCTTACGATAGGGAT
ATCTAGGGGTGTGGGGCCCCGGGATGGGCGCGGACAGCGCCTTTTGGGAG
CAGCAACCACCGTCGGTATACATGGCCTTCGTGTTGTACCTTTTCCCGGG
GAGTTTTTCGTTGCAAGGGATCAGGCTGTCGTACTGTTTACCCTGGCGTG
TCGGCCAGGACCGCGTTAATTGCACGACTGCTCGTTGCCGCGGTGATGGT
TGTTTTGTGCGATATGTGCTGCATGTTTTGGGCACATGCCGTTGGCCACA
TGACGAGGGCGTGTACCGACCAGCTCCGCCGAAATAGGTGTCCAGACGCC
TACGATCCAGACCAGATCGGTTTCGTTGATCAGATAACTTCCTTCTACAA
GGAAACGTCCTGCGTCCGTTGCCCGTCGCTCGATCATGTGGCTGTGTCGA
TTTTTGATCCTATTCGACTTGCTAGGCGCGCACCGCAGTTTATTGTTTGG
TTGCGTGCGTGCGATTGCCGTTCGTATGCTAGATTTTCTTGTGGACCACG
AACTGACGAGATAACCGAGTGCGTGAATTTTTATTTGCGTTACTGCGTGC
AGCTATACCGGAACGTTGCATACCCTTACAATACCAGCGGGGCCGTAGCT
TCGAGCATGCTCAACATCGACAGGATCTGGTGAACCGTCAAGTGTGGGGT
CTGAAAGTACAATGTGCCGTACCGTCCTTCTGTTAAGGGTGGGCGAAGAC
AGAAAATACGCCAGCAGGCACGGTGTACAGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12195:988..1770+

>mRNA_M-pyrifera_M_contig12195.4509.1 ID=mRNA_M-pyrifera_M_contig12195.4509.1|Name=mRNA_M-pyrifera_M_contig12195.4509.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig12195:988..1770+ (Macrocystis pyrifera P11B4 male)
ATGGTTGTTTTGTGCGATATGTGCTGCATGTTTTGGGCACATGCCGTTGG
CCACATGACGAGGGCGTGTACCGACCAGCTCCGCCGAAATAGGTGTCCAG
ACGCCTACGATCCAGACCAGATCGGTTTCGTTGATCAGATAACTTCCTTC
TACAAGGAAACGTCCTGCGTCCGTTGCCCGTCGCTCGATCATGTGGCTGT
GTCGATTTTTGATCCTATTCGACTTGCTAGGCGCGCACCGCAGTTTATTG
TTTGGTTGCGTGCGTGCGATTGCCGTTCGTATGCTAGATTTTCTTGTGGA
CCACGAACTGACGAGATAACCGAGTGCGTGAATTTTTATTTGCGTTACTG
CGTGCAGCTATACCGGAACGTTGCATACCCTTACAATACCAGCGGGGCCG
TAGCTTCGAGCATGCTCAACATCGACAGGATCTGGTGAATGGTTGTTTTG
TGCGATATGTGCTGCATGTTTTGGGCACATGCCGTTGGCCACATGACGAG
GGCGTGTACCGACCAGCTCCGCCGAAATAGGTGTCCAGACGCCTACGATC
CAGACCAGATCGGTTTCGTTGATCAGATAACTTCCTTCTACAAGGAAACG
TCCTGCGTCCGTTGCCCGTCGCTCGATCATGTGGCTGTGTCGATTTTTGA
TCCTATTCGACTTGCTAGGCGCGCACCGCAGTTTATTGTTTGGTTGCGTG
CGTGCGATTGCCGTTCGTATGCTAGATTTTCTTGTGGACCACGAACTGAC
GAGATAACCGAGTGCGTGAATTTTTATTTGCGTTACTGCGTGCAGCTATA
CCGGAACGTTGCATACCCTTACAATACCAGCGGGGCCGTAGCTTCGAGCA
TGCTCAACATCGACAGGATCTGGTGA
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