mRNA_M-pyrifera_M_contig121833.4491.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121833.4491.1
Unique NamemRNA_M-pyrifera_M_contig121833.4491.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121833.4491.1 vs. uniprot
Match: A0A327R3R7_9FLAO (Thiol-activated cytolysin n=1 Tax=Arenibacter echinorum TaxID=440515 RepID=A0A327R3R7_9FLAO)

HSP 1 Score: 58.2 bits (139), Expect = 4.540e-8
Identity = 27/63 (42.86%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:   43 GTLAPGLIVEGAGVEPGDLRVIPLDRAPLTLVSSLASENPTVLVEEPDSTTLTQAVAQLKRDA 231
            G + PG I+EG  VEPGD++++  DRAP+T+ S L   N   +V++P+S T+ QA+A+++ +A
Sbjct:  102 GKIWPGAIIEGNSVEPGDIKLVITDRAPITINSDLVINNTFRVVDKPNSVTVQQAIAEMQIEA 164
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121833.4491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A327R3R7_9FLAO4.540e-842.86Thiol-activated cytolysin n=1 Tax=Arenibacter echi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121833contigM-pyrifera_M_contig121833:38..271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.7587187-CDS-M-pyrifera_M_contig121833:37..2711622815737.7587187-CDS-M-pyrifera_M_contig121833:37..271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121833 38..271 -
1692277545.9159274-CDS-M-pyrifera_M_contig121833:37..2711692277545.9159274-CDS-M-pyrifera_M_contig121833:37..271Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121833 38..271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121833.4491.1prot_M-pyrifera_M_contig121833.4491.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121833 38..271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121833.4491.1

>prot_M-pyrifera_M_contig121833.4491.1 ID=prot_M-pyrifera_M_contig121833.4491.1|Name=mRNA_M-pyrifera_M_contig121833.4491.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
LSRSFDQLPAFGFSGTLAPGLIVEGAGVEPGDLRVIPLDRAPLTLVSSLA
SENPTVLVEEPDSTTLTQAVAQLKRDAD
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mRNA from alignment at M-pyrifera_M_contig121833:38..271-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121833.4491.1 ID=mRNA_M-pyrifera_M_contig121833.4491.1|Name=mRNA_M-pyrifera_M_contig121833.4491.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig121833:38..271- (Macrocystis pyrifera P11B4 male)
CTCAGCCGCTCGTTCGACCAGCTCCCCGCCTTCGGCTTCTCCGGGACGCT
CGCGCCCGGCCTGATCGTCGAGGGTGCCGGCGTCGAGCCCGGCGACCTTC
GCGTGATCCCCCTCGACCGGGCGCCGCTCACGCTGGTGTCGAGCCTCGCC
TCGGAGAACCCGACCGTGCTAGTCGAAGAGCCCGACTCCACCACCCTCAC
CCAGGCGGTCGCCCAACTCAAGCGGGATGCCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121833:38..271-

>mRNA_M-pyrifera_M_contig121833.4491.1 ID=mRNA_M-pyrifera_M_contig121833.4491.1|Name=mRNA_M-pyrifera_M_contig121833.4491.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig121833:38..271- (Macrocystis pyrifera P11B4 male)
CTCAGCCGCTCGTTCGACCAGCTCCCCGCCTTCGGCTTCTCCGGGACGCT
CGCGCCCGGCCTGATCGTCGAGGGTGCCGGCGTCGAGCCCGGCGACCTTC
GCGTGATCCCCCTCGACCGGGCGCCGCTCACGCTGGTGTCGAGCCTCGCC
TCGGAGAACCCGACCGTGCTAGTCGAAGAGCCCGACTCCACCACCCTCAC
CCAGGCGGTCGCCCAACTCAAGCGGGATGCCGACCTCAGCCGCTCGTTCG
ACCAGCTCCCCGCCTTCGGCTTCTCCGGGACGCTCGCGCCCGGCCTGATC
GTCGAGGGTGCCGGCGTCGAGCCCGGCGACCTTCGCGTGATCCCCCTCGA
CCGGGCGCCGCTCACGCTGGTGTCGAGCCTCGCCTCGGAGAACCCGACCG
TGCTAGTCGAAGAGCCCGACTCCACCACCCTCACCCAGGCGGTCGCCCAA
CTCAAGCGGGATGCCGAC
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