mRNA_M-pyrifera_M_contig121830.4490.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121830.4490.1
Unique NamemRNA_M-pyrifera_M_contig121830.4490.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121830.4490.1 vs. uniprot
Match: A0A6I6AJN2_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AJN2_9PLAN)

HSP 1 Score: 352 bits (902), Expect = 1.220e-114
Identity = 173/177 (97.74%), Postives = 173/177 (97.74%), Query Frame = 1 
Query:    1 IYEHDYFGVFFSRWESEDKKVFRISPDGKKLYGVSSGGEMLTLERDAAVESTDQLATKARKEVWQTVLTPGKIWEGTIRSLKHKQTAEVKMIVRGFELEGKQVTLELVPKVQQKAKVVFEGSLDTSDRGTNGFGLVLKKKQKVSGPGNVFGNWDTQLQFRLDATEKRLSGRTNDHGD 531
            IYEHDYFGVFFSRWESEDKKVFRISPDGK LYGVSSGGEMLTLERDAAVESTDQLATKARKEVWQTVLTPGKIWEGTIRSLKHKQTAEVKMIVRGFELEGKQVTLELVPKVQQK KVVFEGSLDTSDRGTNGFGLVLKKKQKVSGPGNVFGNWDTQLQFRLDAT KRL GRTNDHGD
Sbjct:  592 IYEHDYFGVFFSRWESEDKKVFRISPDGKNLYGVSSGGEMLTLERDAAVESTDQLATKARKEVWQTVLTPGKIWEGTIRSLKHKQTAEVKMIVRGFELEGKQVTLELVPKVQQKVKVVFEGSLDTSDRGTNGFGLVLKKKQKVSGPGNVFGNWDTQLQFRLDATGKRLLGRTNDHGD 768
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BLAST of mRNA_M-pyrifera_M_contig121830.4490.1 vs. uniprot
Match: A0A518IEU4_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IEU4_9PLAN)

HSP 1 Score: 300 bits (769), Expect = 6.830e-95
Identity = 142/177 (80.23%), Postives = 158/177 (89.27%), Query Frame = 1 
Query:    1 IYEHDYFGVFFSRWESEDKKVFRISPDGKKLYGVSSGGEMLTLERDAAVESTDQLATKARKEVWQTVLTPGKIWEGTIRSLKHKQTAEVKMIVRGFELEGKQVTLELVPKVQQKAKVVFEGSLDTSDRGTNGFGLVLKKKQKVSGPGNVFGNWDTQLQFRLDATEKRLSGRTNDHGD 531
            IYEHDYFGVFFSRW+SEDKKVFRISPDGKK+YG+S  GE+LTLERD AVE TDQL T  RK+VW+  LT GKIWEGTI+S+K KQTAEVKMIVRG+EL+GKQVTLE VPKV +KAK VFEGSLDTSD+GTNGFGL+ KKK K SGPGNVFGNWDTQL+FRLDA+ KR+ GRTNDHGD
Sbjct:  591 IYEHDYFGVFFSRWQSEDKKVFRISPDGKKIYGLSKQGEVLTLERDPAVEKTDQLTTDERKQVWKKCLTVGKIWEGTIKSVKQKQTAEVKMIVRGYELDGKQVTLEFVPKVNRKAKTVFEGSLDTSDKGTNGFGLIAKKKLKFSGPGNVFGNWDTQLEFRLDASGKRILGRTNDHGD 767
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BLAST of mRNA_M-pyrifera_M_contig121830.4490.1 vs. uniprot
Match: A0A517XDX4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris TaxID=122 RepID=A0A517XDX4_9PLAN)

HSP 1 Score: 257 bits (657), Expect = 1.730e-83
Identity = 119/177 (67.23%), Postives = 147/177 (83.05%), Query Frame = 1 
Query:    1 IYEHDYFGVFFSRWESEDKKVFRISPDGKKLYGVSSGGEMLTLERDAAVESTDQLATKARKEVWQTVLTPGKIWEGTIRSLKHKQTAEVKMIVRGFELEGKQVTLELVPKVQQKAKVVFEGSLDTSDRGTNGFGLVLKKKQKVSGPGNVFGNWDTQLQFRLDATEKRLSGRTNDHGD 531
            +YEH+YFGVFFSRW+SED+KVFRISP GK LYG+S+ GE++ LERD+A   +++  T    + W+  LT GK+WEGTIRS+K +QTAE+KMIV+G+ELEG++VTLE VPKV +KA+ VFEGSLDTSD+  NG+GLVLKK  K  GPGNVFG W+TQLQFRLDAT KR+ GRTNDHGD
Sbjct:  116 VYEHEYFGVFFSRWQSEDQKVFRISPYGKTLYGLSTEGEVMLLERDSAEVKSNRQTTPESLQAWKQALTEGKVWEGTIRSVKEQQTAELKMIVKGYELEGEKVTLEFVPKVNRKARAVFEGSLDTSDKAINGYGLVLKKTLKFDGPGNVFGRWETQLQFRLDATGKRMIGRTNDHGD 292
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BLAST of mRNA_M-pyrifera_M_contig121830.4490.1 vs. uniprot
Match: A0A2D5H698_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2D5H698_9PLAN)

HSP 1 Score: 259 bits (661), Expect = 5.310e-79
Identity = 119/177 (67.23%), Postives = 147/177 (83.05%), Query Frame = 1 
Query:    1 IYEHDYFGVFFSRWESEDKKVFRISPDGKKLYGVSSGGEMLTLERDAAVESTDQLATKARKEVWQTVLTPGKIWEGTIRSLKHKQTAEVKMIVRGFELEGKQVTLELVPKVQQKAKVVFEGSLDTSDRGTNGFGLVLKKKQKVSGPGNVFGNWDTQLQFRLDATEKRLSGRTNDHGD 531
            +YEH+YFGVFFSRW+SED+KVFRISPDGK LYG+S+ GE++ LERD+A   +++  T    + W+  LT GK+WEGTIRS+K +QTAE+KMIV+G+ELEG++VTLE VPKV +KA+ VFEGSLDTSD+  NG+GLVLKK  K  GPGNVFG W+TQLQFRLDA  KR+ GRTNDHGD
Sbjct:  592 VYEHEYFGVFFSRWQSEDQKVFRISPDGKTLYGLSTEGEVMLLERDSAEVKSNRQTTSESLQAWKQALTEGKVWEGTIRSVKEQQTAELKMIVKGYELEGEKVTLEFVPKVNRKARAVFEGSLDTSDKAINGYGLVLKKTLKFDGPGNVFGRWETQLQFRLDAIGKRMIGRTNDHGD 768
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BLAST of mRNA_M-pyrifera_M_contig121830.4490.1 vs. uniprot
Match: A0A3D3R120_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3R120_9PLAN)

HSP 1 Score: 179 bits (453), Expect = 8.510e-55
Identity = 83/126 (65.87%), Postives = 102/126 (80.95%), Query Frame = 1 
Query:  154 TDQLATKARKEVWQTVLTPGKIWEGTIRSLKHKQTAEVKMIVRGFELEGKQVTLELVPKVQQKAKVVFEGSLDTSDRGTNGFGLVLKKKQKVSGPGNVFGNWDTQLQFRLDATEKRLSGRTNDHGD 531
            +++  T    + W+  LT GK+WEGTIRS+K +QTAE+KMIV+G+ELEG++VTLE VPKV +KA+ VFEGSLDTSD+  NG+GLVLKK  K  GPGNVFG W+TQLQFRLDA  KR+ GRTNDHGD
Sbjct:    3 SNRQTTSESLQAWKQALTEGKVWEGTIRSVKEQQTAELKMIVKGYELEGEKVTLEFVPKVNRKARAVFEGSLDTSDKAINGYGLVLKKTLKFDGPGNVFGRWETQLQFRLDAIGKRMIGRTNDHGD 128
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121830.4490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6I6AJN2_9PLAN1.220e-11497.74Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A518IEU4_9PLAN6.830e-9580.23Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517XDX4_9PLAN1.730e-8367.23Uncharacterized protein n=1 Tax=Gimesia maris TaxI... [more]
A0A2D5H698_9PLAN5.310e-7967.23Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A3D3R120_9PLAN8.510e-5565.87Uncharacterized protein n=1 Tax=Gimesia maris TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121830contigM-pyrifera_M_contig121830:2..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size531
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815737.7246776-CDS-M-pyrifera_M_contig121830:1..5321622815737.7246776-CDS-M-pyrifera_M_contig121830:1..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121830 2..532 -
1692277545.9067152-CDS-M-pyrifera_M_contig121830:1..5321692277545.9067152-CDS-M-pyrifera_M_contig121830:1..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121830 2..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121830.4490.1prot_M-pyrifera_M_contig121830.4490.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121830 2..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121830.4490.1

>prot_M-pyrifera_M_contig121830.4490.1 ID=prot_M-pyrifera_M_contig121830.4490.1|Name=mRNA_M-pyrifera_M_contig121830.4490.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
IYEHDYFGVFFSRWESEDKKVFRISPDGKKLYGVSSGGEMLTLERDAAVE
STDQLATKARKEVWQTVLTPGKIWEGTIRSLKHKQTAEVKMIVRGFELEG
KQVTLELVPKVQQKAKVVFEGSLDTSDRGTNGFGLVLKKKQKVSGPGNVF
GNWDTQLQFRLDATEKRLSGRTNDHGD
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mRNA from alignment at M-pyrifera_M_contig121830:2..532-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121830.4490.1 ID=mRNA_M-pyrifera_M_contig121830.4490.1|Name=mRNA_M-pyrifera_M_contig121830.4490.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig121830:2..532- (Macrocystis pyrifera P11B4 male)
ATTTATGAACACGACTACTTCGGTGTCTTCTTCAGCCGCTGGGAGTCTGA
AGATAAAAAAGTCTTTCGTATCTCACCCGATGGCAAGAAGCTGTATGGCG
TGAGTTCCGGAGGGGAAATGTTGACTCTGGAGCGGGATGCTGCTGTGGAA
AGTACAGATCAACTGGCGACCAAAGCACGCAAAGAGGTCTGGCAAACAGT
ACTGACTCCGGGGAAGATATGGGAAGGGACCATCAGAAGTCTGAAACATA
AACAGACGGCCGAAGTGAAAATGATTGTTCGTGGTTTTGAATTAGAGGGA
AAACAGGTTACCTTGGAGCTGGTGCCTAAGGTTCAGCAGAAAGCAAAAGT
AGTGTTTGAGGGGAGCCTGGATACTTCGGATCGCGGCACGAACGGTTTTG
GACTGGTGTTGAAGAAAAAACAGAAAGTATCGGGGCCTGGAAATGTATTT
GGTAACTGGGACACGCAGTTGCAGTTTCGCCTGGATGCGACGGAGAAACG
CTTATCAGGGCGGACGAACGATCATGGCGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121830:2..532-

>mRNA_M-pyrifera_M_contig121830.4490.1 ID=mRNA_M-pyrifera_M_contig121830.4490.1|Name=mRNA_M-pyrifera_M_contig121830.4490.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig121830:2..532- (Macrocystis pyrifera P11B4 male)
ATTTATGAACACGACTACTTCGGTGTCTTCTTCAGCCGCTGGGAGTCTGA
AGATAAAAAAGTCTTTCGTATCTCACCCGATGGCAAGAAGCTGTATGGCG
TGAGTTCCGGAGGGGAAATGTTGACTCTGGAGCGGGATGCTGCTGTGGAA
AGTACAGATCAACTGGCGACCAAAGCACGCAAAGAGGTCTGGCAAACAGT
ACTGACTCCGGGGAAGATATGGGAAGGGACCATCAGAAGTCTGAAACATA
AACAGACGGCCGAAGTGAAAATGATTGTTCGTGGTTTTGAATTAGAGGGA
AAACAGGTTACCTTGGAGCTGGTGCCTAAGGTTCAGCAGAAAGCAAAAGT
AGTGTTTGAGGGGAGCCTGGATACTTCGGATCGCGGCACGAACGGTTTTG
GACTGGTGTTGAAGAAAAAACAGAAAGTATCGGGGCCTGGAAATGTATTT
GGTAACTGGGACACGCAGTTGCAGTTTCGCCTGGATGCGACGGAGAAACG
CTTATCAGGGCGGACGAACGATCATGGCGATATTTATGAACACGACTACT
TCGGTGTCTTCTTCAGCCGCTGGGAGTCTGAAGATAAAAAAGTCTTTCGT
ATCTCACCCGATGGCAAGAAGCTGTATGGCGTGAGTTCCGGAGGGGAAAT
GTTGACTCTGGAGCGGGATGCTGCTGTGGAAAGTACAGATCAACTGGCGA
CCAAAGCACGCAAAGAGGTCTGGCAAACAGTACTGACTCCGGGGAAGATA
TGGGAAGGGACCATCAGAAGTCTGAAACATAAACAGACGGCCGAAGTGAA
AATGATTGTTCGTGGTTTTGAATTAGAGGGAAAACAGGTTACCTTGGAGC
TGGTGCCTAAGGTTCAGCAGAAAGCAAAAGTAGTGTTTGAGGGGAGCCTG
GATACTTCGGATCGCGGCACGAACGGTTTTGGACTGGTGTTGAAGAAAAA
ACAGAAAGTATCGGGGCCTGGAAATGTATTTGGTAACTGGGACACGCAGT
TGCAGTTTCGCCTGGATGCGACGGAGAAACGCTTATCAGGGCGGACGAAC
GATCATGGCGAT
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