mRNA_M-pyrifera_M_contig121452.4417.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121452.4417.1
Unique NamemRNA_M-pyrifera_M_contig121452.4417.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121452.4417.1 vs. uniprot
Match: A0A482R764_9ARCH (PX domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482R764_9ARCH)

HSP 1 Score: 51.2 bits (121), Expect = 1.340e-5
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:    4 VAYLVRVKTVVRTWIVQRRYREFAALYRCLCSALPADEVPHLPTPSEMRAFRGGM---VSEQRRLALQTWLGMVVRRKEMWECDDLCLFLD 267
            V Y + V+    +WIV+RR+++FAAL+  L S LP D VP LP P +MR  +        E RR  L+ +L  V+R  E    + L  FL+
Sbjct:   47 VTYTLAVEAQGVSWIVKRRFKQFAALHAQLLSVLPTDAVPELP-PKQMRIGKARFDPEFIESRRSKLELFLQRVLRLIEPERLEALDNFLE 136
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121452.4417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A482R764_9ARCH1.340e-538.46PX domain-containing protein (Fragment) n=1 Tax=ar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121452contigM-pyrifera_M_contig121452:223..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue8.5e-08
Seed eggNOG ortholog2880.D7FN92
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815733.839833-CDS-M-pyrifera_M_contig121452:222..5341622815733.839833-CDS-M-pyrifera_M_contig121452:222..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121452 223..534 -
1692277544.0364044-CDS-M-pyrifera_M_contig121452:222..5341692277544.0364044-CDS-M-pyrifera_M_contig121452:222..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121452 223..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121452.4417.1prot_M-pyrifera_M_contig121452.4417.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121452 223..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121452.4417.1

>prot_M-pyrifera_M_contig121452.4417.1 ID=prot_M-pyrifera_M_contig121452.4417.1|Name=mRNA_M-pyrifera_M_contig121452.4417.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
HVAYLVRVKTVVRTWIVQRRYREFAALYRCLCSALPADEVPHLPTPSEMR
AFRGGMVSEQRRLALQTWLGMVVRRKEMWECDDLCLFLDDRRRTLGLQAA
LARL
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mRNA from alignment at M-pyrifera_M_contig121452:223..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121452.4417.1 ID=mRNA_M-pyrifera_M_contig121452.4417.1|Name=mRNA_M-pyrifera_M_contig121452.4417.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig121452:223..534- (Macrocystis pyrifera P11B4 male)
CACGTGGCCTATTTGGTGCGGGTTAAGACTGTGGTGCGGACTTGGATCGT
GCAACGGCGGTATCGCGAATTCGCGGCGCTGTACCGCTGCCTTTGTTCCG
CACTGCCCGCCGACGAAGTTCCACACCTCCCCACCCCCTCGGAAATGCGG
GCCTTCCGAGGTGGGATGGTCAGCGAACAGAGGAGACTGGCGCTGCAGAC
GTGGCTGGGGATGGTGGTGCGGAGGAAGGAAATGTGGGAGTGCGACGATT
TGTGTCTCTTTCTAGACGACAGAAGAAGAACATTGGGGTTACAGGCGGCA
TTGGCGAGGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121452:223..534-

>mRNA_M-pyrifera_M_contig121452.4417.1 ID=mRNA_M-pyrifera_M_contig121452.4417.1|Name=mRNA_M-pyrifera_M_contig121452.4417.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig121452:223..534- (Macrocystis pyrifera P11B4 male)
CACGTGGCCTATTTGGTGCGGGTTAAGACTGTGGTGCGGACTTGGATCGT
GCAACGGCGGTATCGCGAATTCGCGGCGCTGTACCGCTGCCTTTGTTCCG
CACTGCCCGCCGACGAAGTTCCACACCTCCCCACCCCCTCGGAAATGCGG
GCCTTCCGAGGTGGGATGGTCAGCGAACAGAGGAGACTGGCGCTGCAGAC
GTGGCTGGGGATGGTGGTGCGGAGGAAGGAAATGTGGGAGTGCGACGATT
TGTGTCTCTTTCTAGACGACAGAAGAAGAACATTGGGGTTACAGGCGGCA
TTGGCGAGGCTCCACGTGGCCTATTTGGTGCGGGTTAAGACTGTGGTGCG
GACTTGGATCGTGCAACGGCGGTATCGCGAATTCGCGGCGCTGTACCGCT
GCCTTTGTTCCGCACTGCCCGCCGACGAAGTTCCACACCTCCCCACCCCC
TCGGAAATGCGGGCCTTCCGAGGTGGGATGGTCAGCGAACAGAGGAGACT
GGCGCTGCAGACGTGGCTGGGGATGGTGGTGCGGAGGAAGGAAATGTGGG
AGTGCGACGATTTGTGTCTCTTTCTAGACGACAGAAGAAGAACATTGGGG
TTACAGGCGGCATTGGCGAGGCTC
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