mRNA_M-pyrifera_M_contig121404.4401.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121404.4401.1
Unique NamemRNA_M-pyrifera_M_contig121404.4401.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121404.4401.1 vs. uniprot
Match: A0A7S3V260_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V260_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.520e-32
Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:    1 AHKLTTFQGVTVPVLLNIFGVILFLRLGWVAGQAGTLYGTLIICLSNVVTGITALSLCAICTNGEVKGGGAYFLISRSLGPAFGGAIGL 267
            A KL    GV VP LLNI+GVI+FLRLGWV GQAG   GT+II  +NVVT +TALS+CAICTNGEVKGGG YFLISR+LGP FGG IG+
Sbjct:   58 ATKLNWKTGVLVPCLLNIWGVIMFLRLGWVVGQAGIWLGTVIIIFANVVTTVTALSMCAICTNGEVKGGGVYFLISRALGPVFGGCIGI 146
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BLAST of mRNA_M-pyrifera_M_contig121404.4401.1 vs. uniprot
Match: A0A0N4XJM1_NIPBR (AA_permease domain-containing protein n=1 Tax=Nippostrongylus brasiliensis TaxID=27835 RepID=A0A0N4XJM1_NIPBR)

HSP 1 Score: 118 bits (295), Expect = 2.620e-31
Identity = 59/82 (71.95%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:   22 QGVTVPVLLNIFGVILFLRLGWVAGQAGTLYGTLIICLSNVVTGITALSLCAICTNGEVKGGGAYFLISRSLGPAFGGAIGL 267
            QGV V  LLNIFGV+L+LR+ WVAGQAG   G++I+ L+++VT ITA+S CAICTNG+VKGGGAYFLISRSLGP FGG+IGL
Sbjct:   87 QGVFVRCLLNIFGVMLYLRISWVAGQAGIGLGSMIVLLASLVTSITAISTCAICTNGDVKGGGAYFLISRSLGPEFGGSIGL 168
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BLAST of mRNA_M-pyrifera_M_contig121404.4401.1 vs. uniprot
Match: A0A2R5GVU3_9STRA (Solute carrier family 12 member 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVU3_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.970e-31
Identity = 64/87 (73.56%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:    7 KLTTFQGVTVPVLLNIFGVILFLRLGWVAGQAGTLYGTLIICLSNVVTGITALSLCAICTNGEVKGGGAYFLISRSLGPAFGGAIGL 267
            KLT  QGV +P LLNI+GVI+FLRLGWV GQAG +   LI+  S VVT ITALSLCAICTNGEVKGGG YFLISR+LGP FGG IG+
Sbjct:  102 KLTWVQGVFIPCLLNIWGVIMFLRLGWVVGQAGIILACLIVFASKVVTTITALSLCAICTNGEVKGGGVYFLISRALGPIFGGPIGV 188
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BLAST of mRNA_M-pyrifera_M_contig121404.4401.1 vs. uniprot
Match: A0A0B2VM44_TOXCA (Solute carrier family 12 member 2 n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2VM44_TOXCA)

HSP 1 Score: 118 bits (295), Expect = 4.740e-30
Identity = 58/82 (70.73%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:   22 QGVTVPVLLNIFGVILFLRLGWVAGQAGTLYGTLIICLSNVVTGITALSLCAICTNGEVKGGGAYFLISRSLGPAFGGAIGL 267
            QGV V  LLNIFGV+L+LR+ WVAGQAG   G++++ L+++VT ITA+S CAICTNG+VKGGGAYFLISRSLGP FGG+IGL
Sbjct:  225 QGVFVRCLLNIFGVMLYLRVSWVAGQAGIALGSVVVLLASLVTSITAISTCAICTNGDVKGGGAYFLISRSLGPEFGGSIGL 306
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BLAST of mRNA_M-pyrifera_M_contig121404.4401.1 vs. uniprot
Match: A0A0C2H6T7_9BILA (Amino acid permease n=2 Tax=Ancylostoma TaxID=29169 RepID=A0A0C2H6T7_9BILA)

HSP 1 Score: 118 bits (295), Expect = 6.890e-30
Identity = 59/82 (71.95%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:   22 QGVTVPVLLNIFGVILFLRLGWVAGQAGTLYGTLIICLSNVVTGITALSLCAICTNGEVKGGGAYFLISRSLGPAFGGAIGL 267
            QGV V  LLNIFGV+L+LR+ WVAGQAG   G++I+ L+++VT ITA+S CAICTNG+VKGGGAYFLISRSLGP FGG+IGL
Sbjct:   88 QGVFVRCLLNIFGVMLYLRISWVAGQAGIGLGSMIVLLASLVTSITAISTCAICTNGDVKGGGAYFLISRSLGPEFGGSIGL 169
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BLAST of mRNA_M-pyrifera_M_contig121404.4401.1 vs. uniprot
Match: A0A158Q351_DRAME (Uncharacterized protein n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A158Q351_DRAME)

HSP 1 Score: 119 bits (299), Expect = 1.640e-29
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:   22 QGVTVPVLLNIFGVILFLRLGWVAGQAGTLYGTLIICLSNVVTGITALSLCAICTNGEVKGGGAYFLISRSLGPAFGGAIGL 267
            QGV V  LLNIFGV+L+LR+ WVAGQAG   G+L++ L++VVT ITALS CAICTNG+VKGGGAYFLISRSLGP FGG+IGL
Sbjct:  186 QGVFVRCLLNIFGVMLYLRVSWVAGQAGIALGSLVVFLASVVTFITALSTCAICTNGDVKGGGAYFLISRSLGPEFGGSIGL 267
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BLAST of mRNA_M-pyrifera_M_contig121404.4401.1 vs. uniprot
Match: A0A183F2V0_HELPZ (AA_permease domain-containing protein n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183F2V0_HELPZ)

HSP 1 Score: 118 bits (296), Expect = 2.750e-29
Identity = 59/82 (71.95%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:   22 QGVTVPVLLNIFGVILFLRLGWVAGQAGTLYGTLIICLSNVVTGITALSLCAICTNGEVKGGGAYFLISRSLGPAFGGAIGL 267
            QGV V  LLNIFGV+L+LR+ WVAGQAG   G++I+ L+++VT ITA+S CAICTNG+VKGGGAYFLISRSLGP FGG+IGL
Sbjct:   80 QGVFVRCLLNIFGVMLYLRISWVAGQAGVGLGSMIVLLASLVTSITAISTCAICTNGDVKGGGAYFLISRSLGPEFGGSIGL 161
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BLAST of mRNA_M-pyrifera_M_contig121404.4401.1 vs. uniprot
Match: A0A1I7YIY5_9BILA (Uncharacterized protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7YIY5_9BILA)

HSP 1 Score: 119 bits (297), Expect = 3.060e-29
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:   22 QGVTVPVLLNIFGVILFLRLGWVAGQAGTLYGTLIICLSNVVTGITALSLCAICTNGEVKGGGAYFLISRSLGPAFGGAIGL 267
            QGV V  LLNIFGV+L+LR+ WVAGQ G L G+ ++ L++VVT ITA+S CAICTNG+VKGGGAYFLISRSLGP FGG+IGL
Sbjct:  375 QGVFVRCLLNIFGVMLYLRVSWVAGQCGILLGSAVVLLASVVTSITAISTCAICTNGDVKGGGAYFLISRSLGPEFGGSIGL 456
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BLAST of mRNA_M-pyrifera_M_contig121404.4401.1 vs. uniprot
Match: F1KRR2_ASCSU (Solute carrier family 12 member 2 n=1 Tax=Ascaris suum TaxID=6253 RepID=F1KRR2_ASCSU)

HSP 1 Score: 118 bits (296), Expect = 4.210e-29
Identity = 58/82 (70.73%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:   22 QGVTVPVLLNIFGVILFLRLGWVAGQAGTLYGTLIICLSNVVTGITALSLCAICTNGEVKGGGAYFLISRSLGPAFGGAIGL 267
            QGV V  LLNIFGV+L+LR+ WVAGQAG   G++++ L+++VT ITA+S CAICTNG+VKGGGAYFLISRSLGP FGG+IGL
Sbjct:  223 QGVFVRCLLNIFGVMLYLRVSWVAGQAGIALGSMVVLLASLVTSITAISTCAICTNGDVKGGGAYFLISRSLGPEFGGSIGL 304
[Close]
BLAST of mRNA_M-pyrifera_M_contig121404.4401.1 vs. uniprot
Match: A0A0N4XI20_NIPBR (Uncharacterized protein n=1 Tax=Nippostrongylus brasiliensis TaxID=27835 RepID=A0A0N4XI20_NIPBR)

HSP 1 Score: 118 bits (295), Expect = 5.410e-29
Identity = 59/82 (71.95%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:   22 QGVTVPVLLNIFGVILFLRLGWVAGQAGTLYGTLIICLSNVVTGITALSLCAICTNGEVKGGGAYFLISRSLGPAFGGAIGL 267
            QGV V  LLNIFGV+L+LR+ WVAGQAG   G++I+ L+++VT ITA+S CAICTNG+VKGGGAYFLISRSLGP FGG+IGL
Sbjct:   87 QGVFVRCLLNIFGVMLYLRISWVAGQAGIGLGSMIVLLASLVTSITAISTCAICTNGDVKGGGAYFLISRSLGPEFGGSIGL 168
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121404.4401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3V260_9STRA2.520e-3271.91Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A0N4XJM1_NIPBR2.620e-3171.95AA_permease domain-containing protein n=1 Tax=Nipp... [more]
A0A2R5GVU3_9STRA3.970e-3173.56Solute carrier family 12 member 2 n=1 Tax=Hondaea ... [more]
A0A0B2VM44_TOXCA4.740e-3070.73Solute carrier family 12 member 2 n=2 Tax=Toxocara... [more]
A0A0C2H6T7_9BILA6.890e-3071.95Amino acid permease n=2 Tax=Ancylostoma TaxID=2916... [more]
A0A158Q351_DRAME1.640e-2974.39Uncharacterized protein n=1 Tax=Dracunculus medine... [more]
A0A183F2V0_HELPZ2.750e-2971.95AA_permease domain-containing protein n=1 Tax=Heli... [more]
A0A1I7YIY5_9BILA3.060e-2971.95Uncharacterized protein n=1 Tax=Steinernema glaser... [more]
F1KRR2_ASCSU4.210e-2970.73Solute carrier family 12 member 2 n=1 Tax=Ascaris ... [more]
A0A0N4XI20_NIPBR5.410e-2971.95Uncharacterized protein n=1 Tax=Nippostrongylus br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121404contigM-pyrifera_M_contig121404:266..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score112.5
Seed ortholog evalue1e-22
Seed eggNOG ortholog7209.EJD74990.1
KEGG koko:K10951
KEGG TC2.A.30.2,2.A.30.3
KEGG Pathwayko04970,ko04972,ko05110,map04970,map04972,map05110
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.transporter activity
EggNOG OGs1KY21@119089,3AKK3@33154,3BCJ8@33208,3CU2U@33213,40CHT@6231,COG0531@1,KOG2083@2759
COG Functional cat.P
Best tax levelChromadorea
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko02000
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815733.1615372-CDS-M-pyrifera_M_contig121404:265..5321622815733.1615372-CDS-M-pyrifera_M_contig121404:265..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121404 266..532 +
1692277543.774817-CDS-M-pyrifera_M_contig121404:265..5321692277543.774817-CDS-M-pyrifera_M_contig121404:265..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121404 266..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121404.4401.1prot_M-pyrifera_M_contig121404.4401.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121404 266..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121404.4401.1

>prot_M-pyrifera_M_contig121404.4401.1 ID=prot_M-pyrifera_M_contig121404.4401.1|Name=mRNA_M-pyrifera_M_contig121404.4401.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
AHKLTTFQGVTVPVLLNIFGVILFLRLGWVAGQAGTLYGTLIICLSNVVT
GITALSLCAICTNGEVKGGGAYFLISRSLGPAFGGAIGL
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mRNA from alignment at M-pyrifera_M_contig121404:266..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121404.4401.1 ID=mRNA_M-pyrifera_M_contig121404.4401.1|Name=mRNA_M-pyrifera_M_contig121404.4401.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig121404:266..532+ (Macrocystis pyrifera P11B4 male)
GCACACAAGCTGACCACGTTCCAGGGCGTGACGGTGCCAGTTTTGCTCAA
CATCTTTGGCGTCATCCTCTTCCTGCGCCTTGGCTGGGTTGCTGGCCAAG
CTGGCACATTGTATGGCACCCTCATCATCTGCCTCTCCAATGTCGTCACT
GGCATCACTGCCCTCTCGCTGTGCGCCATTTGCACGAATGGCGAGGTGAA
GGGAGGTGGTGCCTACTTCCTCATCTCACGCTCACTCGGCCCTGCGTTTG
GCGGCGCCATTGGTCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121404:266..532+

>mRNA_M-pyrifera_M_contig121404.4401.1 ID=mRNA_M-pyrifera_M_contig121404.4401.1|Name=mRNA_M-pyrifera_M_contig121404.4401.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig121404:266..532+ (Macrocystis pyrifera P11B4 male)
GCACACAAGCTGACCACGTTCCAGGGCGTGACGGTGCCAGTTTTGCTCAA
CATCTTTGGCGTCATCCTCTTCCTGCGCCTTGGCTGGGTTGCTGGCCAAG
CTGGCACATTGTATGGCACCCTCATCATCTGCCTCTCCAATGTCGTCACT
GGCATCACTGCCCTCTCGCTGTGCGCCATTTGCACGAATGGCGAGGTGAA
GGGAGGTGGTGCCTACTTCCTCATCTCACGCTCACTCGGCCCTGCGTTTG
GCGGCGCCATTGGTCTGGCACACAAGCTGACCACGTTCCAGGGCGTGACG
GTGCCAGTTTTGCTCAACATCTTTGGCGTCATCCTCTTCCTGCGCCTTGG
CTGGGTTGCTGGCCAAGCTGGCACATTGTATGGCACCCTCATCATCTGCC
TCTCCAATGTCGTCACTGGCATCACTGCCCTCTCGCTGTGCGCCATTTGC
ACGAATGGCGAGGTGAAGGGAGGTGGTGCCTACTTCCTCATCTCACGCTC
ACTCGGCCCTGCGTTTGGCGGCGCCATTGGTCTG
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