mRNA_M-pyrifera_M_contig121284.4384.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121284.4384.1
Unique NamemRNA_M-pyrifera_M_contig121284.4384.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121284.4384.1 vs. uniprot
Match: A0A6I6AKM6_9PLAN (Gly-zipper_Omp domain-containing protein n=7 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AKM6_9PLAN)

HSP 1 Score: 110 bits (276), Expect = 2.630e-29
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 YMQQHNYVSTTAEPVIVRERAVVTSPSVVYVRPRPRPRYVRPHYGMHGHFHF 156
            YMQQHNYVSTTAEPVIVRERAVVTSPSVVYVRPRPRPRYVRPHYG+HGHFHF
Sbjct:  150 YMQQHNYVSTTAEPVIVRERAVVTSPSVVYVRPRPRPRYVRPHYGVHGHFHF 201
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BLAST of mRNA_M-pyrifera_M_contig121284.4384.1 vs. uniprot
Match: A0A517Q4D5_9PLAN (Gly-zipper_Omp domain-containing protein n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q4D5_9PLAN)

HSP 1 Score: 97.8 bits (242), Expect = 3.390e-24
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 YMQQHNYVSTTAEPVIVRERAVVTSPSVVYVRPRPRPRYVRPHYGMHGHFHF 156
            +MQQHNYVS+T+EPV+VRER VVTSPSVVYV PRPRPRYVRPHYG+HGHFHF
Sbjct:  150 FMQQHNYVSSTSEPVVVRER-VVTSPSVVYVAPRPRPRYVRPHYGVHGHFHF 200
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BLAST of mRNA_M-pyrifera_M_contig121284.4384.1 vs. uniprot
Match: A0A3C0AQ66_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0AQ66_9PLAN)

HSP 1 Score: 84.0 bits (206), Expect = 2.160e-19
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 YMQQHNYVSTTAEPVIVRER-AVVTSPSVVYVRPRPRPRYVRPHYGMHGHFHF 156
            +MQQHNYV++ AEPVIVR+   VV+SPSVV+VRPRPRPR+ RPHYG+HGHFHF
Sbjct:   90 FMQQHNYVNS-AEPVIVRQTPTVVSSPSVVFVRPRPRPRFYRPHYGVHGHFHF 141
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BLAST of mRNA_M-pyrifera_M_contig121284.4384.1 vs. uniprot
Match: A6BZA4_9PLAN (Gly-zipper_Omp domain-containing protein n=9 Tax=Planctomycetaceae TaxID=126 RepID=A6BZA4_9PLAN)

HSP 1 Score: 82.4 bits (202), Expect = 3.390e-18
Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 YMQQHNYVSTTAEPVIVRER-AVVTSPSVVYVRPRPRPRYVRPHYGMHGHFHF 156
            +MQQHNYVS+T +PV+V++  AVV+SPSVV+VRPRPRPRYVRP YG+H HFHF
Sbjct:  150 FMQQHNYVSST-QPVVVKQAPAVVSSPSVVFVRPRPRPRYVRPRYGVHSHFHF 201
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BLAST of mRNA_M-pyrifera_M_contig121284.4384.1 vs. uniprot
Match: A0A518IDE6_9PLAN (Gly-zipper_Omp domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IDE6_9PLAN)

HSP 1 Score: 80.9 bits (198), Expect = 1.340e-17
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 YMQQHNYVSTTAEPVIVRER--AVVTSPSVVYVRPRPRPRYVRPHYGMHGHFHF 156
            YMQQHNYVS + EP++V++R   VVT PSVVYV PRPR RYVRPH G+HGHFHF
Sbjct:  149 YMQQHNYVSAS-EPIVVKQRPTTVVTQPSVVYVTPRPRRRYVRPHSGIHGHFHF 201
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BLAST of mRNA_M-pyrifera_M_contig121284.4384.1 vs. uniprot
Match: A0A517X0H5_9PLAN (Gly-zipper_Omp domain-containing protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X0H5_9PLAN)

HSP 1 Score: 72.4 bits (176), Expect = 2.450e-14
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 YMQQHNYVSTTAEPVIVRER--AVVTSPSVVYVRPRPRPRYVRPHYGMHGHFHF 156
            +MQ+HNYV+ T EPVIV++R   VVTSPSVVYV PRPRPR+ RP  G+HGHFHF
Sbjct:  149 FMQKHNYVAGT-EPVIVKQRPATVVTSPSVVYVTPRPRPRF-RPRTGIHGHFHF 200
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121284.4384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6I6AKM6_9PLAN2.630e-2998.08Gly-zipper_Omp domain-containing protein n=7 Tax=G... [more]
A0A517Q4D5_9PLAN3.390e-2486.54Gly-zipper_Omp domain-containing protein n=4 Tax=G... [more]
A0A3C0AQ66_9PLAN2.160e-1975.47Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A6BZA4_9PLAN3.390e-1873.58Gly-zipper_Omp domain-containing protein n=9 Tax=P... [more]
A0A518IDE6_9PLAN1.340e-1772.22Gly-zipper_Omp domain-containing protein n=2 Tax=G... [more]
A0A517X0H5_9PLAN2.450e-1470.37Gly-zipper_Omp domain-containing protein n=2 Tax=G... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121284contigM-pyrifera_M_contig121284:3..161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.6
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog344747.PM8797T_28764
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Glycine zipper
EggNOG OGs2DNKX@1,2J0P2@203682,32Y1B@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size156
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.349589-UTR-M-pyrifera_M_contig121284:2..51622815732.349589-UTR-M-pyrifera_M_contig121284:2..5Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121284 3..5 +
1692277543.3229804-UTR-M-pyrifera_M_contig121284:2..51692277543.3229804-UTR-M-pyrifera_M_contig121284:2..5Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121284 3..5 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.3646016-CDS-M-pyrifera_M_contig121284:5..1611622815732.3646016-CDS-M-pyrifera_M_contig121284:5..161Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121284 6..161 +
1692277543.336819-CDS-M-pyrifera_M_contig121284:5..1611692277543.336819-CDS-M-pyrifera_M_contig121284:5..161Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121284 6..161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121284.4384.1prot_M-pyrifera_M_contig121284.4384.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121284 6..161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121284.4384.1

>prot_M-pyrifera_M_contig121284.4384.1 ID=prot_M-pyrifera_M_contig121284.4384.1|Name=mRNA_M-pyrifera_M_contig121284.4384.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
MQQHNYVSTTAEPVIVRERAVVTSPSVVYVRPRPRPRYVRPHYGMHGHFH
F*
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mRNA from alignment at M-pyrifera_M_contig121284:3..161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121284.4384.1 ID=mRNA_M-pyrifera_M_contig121284.4384.1|Name=mRNA_M-pyrifera_M_contig121284.4384.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig121284:3..161+ (Macrocystis pyrifera P11B4 male)
TACATGCAGCAACACAACTACGTGAGTACCACTGCCGAGCCGGTCATCGT
CCGGGAACGGGCGGTTGTGACATCACCCTCGGTGGTCTACGTTCGCCCCC
GTCCGCGTCCACGCTACGTCCGCCCCCACTATGGTATGCACGGGCACTTC
CACTTTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121284:3..161+

>mRNA_M-pyrifera_M_contig121284.4384.1 ID=mRNA_M-pyrifera_M_contig121284.4384.1|Name=mRNA_M-pyrifera_M_contig121284.4384.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig121284:3..161+ (Macrocystis pyrifera P11B4 male)
ATGCAGCAACACAACTACGTGAGTACCACTGCCGAGCCGGTCATCGTCCG
GGAACGGGCGGTTGTGACATCACCCTCGGTGGTCTACGTTCGCCCCCGTC
CGCGTCCACGCTACGTCCGCCCCCACTATGGTATGCACGGGCACTTCCAC
TTTTAAATGCAGCAACACAACTACGTGAGTACCACTGCCGAGCCGGTCAT
CGTCCGGGAACGGGCGGTTGTGACATCACCCTCGGTGGTCTACGTTCGCC
CCCGTCCGCGTCCACGCTACGTCCGCCCCCACTATGGTATGCACGGGCAC
TTCCACTTTTAA
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