mRNA_M-pyrifera_M_contig121244.4376.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121244.4376.1
Unique NamemRNA_M-pyrifera_M_contig121244.4376.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121244.4376.1 vs. uniprot
Match: A0A2E7KGF3_9PLAN (GP-PDE domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KGF3_9PLAN)

HSP 1 Score: 337 bits (864), Expect = 2.660e-109
Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 1
Query:    1 RDYQMLALPQELERQPRYLFDGGSGQRVELQFKKPTVVFAAFEYNNTGAWSFSQGRSPRDHGWRKLANAAYRGTSNGTVKDKPHFASIYYCEFQPGQKLSGLPPWWLCLAIMDANAARQIPGFQAGSSGPITVPSTYSYEAETTRARPLHVPEFQNKRQWAQWQETQR 504
            RDY+MLALPQELE QPRYLFDGGSGQRVELQFKKPTVVFAAFEYNNTGAWSFSQGRSPRDHGWRKL NAAYRGTSNGTVKDKPHFASIYYCEFQPGQKLSGLPPWWLCLAIMDANAA Q+PGFQAG+SGPITVP+TYSYEAE TRARPL VPEFQN RQWAQWQETQR
Sbjct:  310 RDYRMLALPQELEGQPRYLFDGGSGQRVELQFKKPTVVFAAFEYNNTGAWSFSQGRSPRDHGWRKLDNAAYRGTSNGTVKDKPHFASIYYCEFQPGQKLSGLPPWWLCLAIMDANAAYQVPGFQAGTSGPITVPTTYSYEAEATRARPLQVPEFQNNRQWAQWQETQR 477          
BLAST of mRNA_M-pyrifera_M_contig121244.4376.1 vs. uniprot
Match: A0A812LUD4_SYMMI (YhdW protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812LUD4_SYMMI)

HSP 1 Score: 326 bits (836), Expect = 2.470e-102
Identity = 154/168 (91.67%), Postives = 160/168 (95.24%), Query Frame = 1
Query:    1 RDYQMLALPQELERQPRYLFDGGSGQRVELQFKKPTVVFAAFEYNNTGAWSFSQGRSPRDHGWRKLANAAYRGTSNGTVKDKPHFASIYYCEFQPGQKLSGLPPWWLCLAIMDANAARQIPGFQAGSSGPITVPSTYSYEAETTRARPLHVPEFQNKRQWAQWQETQR 504
            RDY+MLA+P+ELE QPRYLFDGGSGQRVELQFKKPTVVFAAFEYNNT AWSFSQGRSPRDHGWRKL NAAYRGTSNGTVKDKPHFASI+YCEFQ GQKLSGLPPWWLCLAIMDANAARQ+PGFQAG+SGPITVPSTYSYEAE TRARPL VPEFQNK  WAQWQETQR
Sbjct:  310 RDYRMLAVPKELEGQPRYLFDGGSGQRVELQFKKPTVVFAAFEYNNTVAWSFSQGRSPRDHGWRKLDNAAYRGTSNGTVKDKPHFASIHYCEFQAGQKLSGLPPWWLCLAIMDANAARQVPGFQAGTSGPITVPSTYSYEAEVTRARPLQVPEFQNKPLWAQWQETQR 477          
BLAST of mRNA_M-pyrifera_M_contig121244.4376.1 vs. uniprot
Match: A0A518A4B7_9PLAN (Glycerophosphoryl diester phosphodiesterase n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A4B7_9PLAN)

HSP 1 Score: 272 bits (696), Expect = 1.910e-84
Identity = 122/168 (72.62%), Postives = 143/168 (85.12%), Query Frame = 1
Query:    1 RDYQMLALPQELERQPRYLFDGGSGQRVELQFKKPTVVFAAFEYNNTGAWSFSQGRSPRDHGWRKLANAAYRGTSNGTVKDKPHFASIYYCEFQPGQKLSGLPPWWLCLAIMDANAARQIPGFQAGSSGPITVPSTYSYEAETTRARPLHVPEFQNKRQWAQWQETQR 504
            RDY+ML LP+ELE QPRYLFDGGSG RVE+ FKKP VVFAAFEYNNTGAWSF QGRSP DHGW++L+  AYRG+SN  +KDKPHFASIY+CEF+ GQ LSGLPPWWLCLAI D  +A+QIPGF+AG+SGP+    T+SYEAE TR RPL VPEF+N++QW++WQ  QR
Sbjct:  305 RDYKMLELPKELEGQPRYLFDGGSGNRVEITFKKPAVVFAAFEYNNTGAWSFPQGRSPEDHGWQRLSTDAYRGSSNDRLKDKPHFASIYFCEFKAGQTLSGLPPWWLCLAITDLKSAKQIPGFKAGTSGPVKTQPTFSYEAEATRPRPLQVPEFKNRQQWSEWQAEQR 472          
BLAST of mRNA_M-pyrifera_M_contig121244.4376.1 vs. uniprot
Match: A0A7C7X8U6_9PLAN (GP-PDE domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7X8U6_9PLAN)

HSP 1 Score: 232 bits (592), Expect = 3.190e-69
Identity = 103/168 (61.31%), Postives = 131/168 (77.98%), Query Frame = 1
Query:    1 RDYQMLALPQELERQPRYLFDGGSGQRVELQFKKPTVVFAAFEYNNTGAWSFSQGRSPRDHGWRKLANAAYRGTSNGTVKDKPHFASIYYCEFQPGQKLSGLPPWWLCLAIMDANAARQIPGFQAGSSGPITVPSTYSYEAETTRARPLHVPEFQNKRQWAQWQETQR 504
            RDY+M+ LPQ L  QPRY+FDGGSG R+ ++F KP VVFAAFEYN+TGAWSF  GR+P D GWR L    YRGTSN  + DKPHFASIYYCE+  G++LSGLP WWLCLAI+D  +A +IPG++ G+SGPI +  T+SYE  +T  RPL VP+F++++QW  WQE++R
Sbjct:  304 RDYEMVVLPQALHDQPRYIFDGGSGDRIVMKFGKPAVVFAAFEYNDTGAWSFPAGRTPLDLGWRLLTQNGYRGTSNDNLGDKPHFASIYYCEYDGGEQLSGLPAWWLCLAIVDPASAAKIPGYRRGTSGPIAISPTFSYEGWSTGERPLDVPQFESRKQWNAWQESRR 471          
BLAST of mRNA_M-pyrifera_M_contig121244.4376.1 vs. uniprot
Match: A0A7C7R790_9PLAN (AXE1 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7R790_9PLAN)

HSP 1 Score: 195 bits (495), Expect = 2.010e-56
Identity = 95/168 (56.55%), Postives = 113/168 (67.26%), Query Frame = 1
Query:    1 RDYQMLALPQELERQPRYLFDGGSGQRVELQFKKPTVVFAAFEYNNTGAWSFSQGRSPRDHGWRKLANAAYRGTSNGTVKDKPHFASIYYCEFQPGQKLSGLPPWWLCLAIMDANAARQIPGFQAGSSGPITVPSTYSYEAETTRARPLHVPEFQNKRQWAQWQETQR 504
            R+YQML LP ELE Q RYLFDGG G R+ ++F+KP VVFAA EYN+TGAWS   GR P D GWR     AYRGTSN       H+ASIYYC+F  GQ+L G  PWWLCLAI+  + A  I GFQ  +SGP  V   +SYE   TR R LHVP F+   Q+A+WQ+ +R
Sbjct:  100 REYQMLELPPELEGQVRYLFDGGLGDRLVVRFRKPAVVFAALEYNDTGAWSLPDGRPPSDFGWRLWRKDAYRGTSNAERNGLLHYASIYYCQFDAGQQLRGPAPWWLCLAIVGLDQAEAIAGFQPDTSGPRGVTPAFSYEEWATRERRLHVPAFEGNDQFARWQKDRR 267          
BLAST of mRNA_M-pyrifera_M_contig121244.4376.1 vs. uniprot
Match: A0A7V5UIX0_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7V5UIX0_9PLAN)

HSP 1 Score: 166 bits (420), Expect = 1.050e-45
Identity = 76/165 (46.06%), Postives = 105/165 (63.64%), Query Frame = 1
Query:    1 RDYQMLALPQELERQPRYLFDGGSGQRVELQFKKPTVVFAAFEYNNTGAWSFSQGRSPRDHGWRKLANAAYRGTSNGTVKDKPHFASIYYCEFQPGQKLSGLPPWWLCLAIMDANAARQIPGFQAGSSGPITVPSTYSYEAETTRARPLHVPEFQNKRQWAQWQE 495
            R+Y ML LP  L+ +PR++F GG G RV ++F+K TVVFA FEYN+TG WSF   R P   GWR +    YRGTSNG +  + H+  IY   F  G++L  +P WW+CLA+++ + A ++PG++    G    P  +SY    TR RPL VP F++  QWA+WQE
Sbjct:   80 RNYTMLELPDGLQGRPRWMFAGGEGDRVTMRFRKATVVFAVFEYNDTGLWSFPLKRPPYTFGWRPVPGQKYRGTSNGMLGGRTHYGQIYVRHFAAGEELGEMPKWWICLAVVEPSDALRLPGYRKAIEGEPPAPP-FSYYDWATRPRPLQVPPFESHEQWARWQE 243          
BLAST of mRNA_M-pyrifera_M_contig121244.4376.1 vs. uniprot
Match: A0A836RE47_9PLAN (AXE1 domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RE47_9PLAN)

HSP 1 Score: 134 bits (336), Expect = 8.240e-35
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  184 GWRKLANAAYRGTSNGTVKDKPHFASIYYCEFQPGQKLSGLPPWWLCLAIMDANAARQIPGFQAGSSGPITVPSTYSYEAETTRARPLHVPEFQNKRQWAQWQETQR 504
            GWR     AYRGTSN     +PHFAS+YYC+F+PGQ+L GL PWWLCLAI+  + A++IPGFQ  +SGP  + S +SYE   TR+RPL+VP F +  ++AQWQ  QR
Sbjct:    2 GWRLWRKDAYRGTSNAERHGRPHFASVYYCQFRPGQELRGLAPWWLCLAIVSLDEAKKIPGFQPDTSGPRPLASVFSYEEWATRSRPLNVPSFNHASRFAQWQNEQR 108          
BLAST of mRNA_M-pyrifera_M_contig121244.4376.1 vs. uniprot
Match: A0A836RN10_9PLAN (Glycerophosphodiester phosphodiesterase family protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RN10_9PLAN)

HSP 1 Score: 79.7 bits (195), Expect = 1.610e-14
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    1 RDYQMLALPQELERQPRYLFDGGSGQRVELQFKKPTVVFAAFEYNNTGAWSF 156
            RDY+M ALP ELE + R++FDGG G  V ++F++P VVFAAFEYN+TGAWSF
Sbjct:  298 RDYEMRALPSELEGRARFVFDGGRGNNVSIRFREPAVVFAAFEYNDTGAWSF 349          
BLAST of mRNA_M-pyrifera_M_contig121244.4376.1 vs. uniprot
Match: A0A7V5UIV0_9PLAN (Glycerophosphodiester phosphodiesterase family protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7V5UIV0_9PLAN)

HSP 1 Score: 64.7 bits (156), Expect = 4.030e-9
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    1 RDYQMLALPQELERQPRYLFDGGSGQRVELQFKKPTVVFAAFEYNNT 141
            R+Y ML LP EL+ +PR++F GG G RV ++F+K TVVFA FEYN+T
Sbjct:  353 RNYTMLELPDELQGRPRWMFAGGEGDRVTMRFRKATVVFAVFEYNDT 399          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121244.4376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2E7KGF3_9PLAN2.660e-10994.05GP-PDE domain-containing protein n=6 Tax=Gimesia T... [more]
A0A812LUD4_SYMMI2.470e-10291.67YhdW protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A518A4B7_9PLAN1.910e-8472.62Glycerophosphoryl diester phosphodiesterase n=3 Ta... [more]
A0A7C7X8U6_9PLAN3.190e-6961.31GP-PDE domain-containing protein n=1 Tax=Planctomy... [more]
A0A7C7R790_9PLAN2.010e-5656.55AXE1 domain-containing protein n=1 Tax=Planctomyce... [more]
A0A7V5UIX0_9PLAN1.050e-4546.06Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A836RE47_9PLAN8.240e-3556.07AXE1 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A836RN10_9PLAN1.610e-1465.38Glycerophosphodiester phosphodiesterase family pro... [more]
A0A7V5UIV0_9PLAN4.030e-959.57Glycerophosphodiester phosphodiesterase family pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121244contigM-pyrifera_M_contig121244:27..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size495
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.9902644-CDS-M-pyrifera_M_contig121244:26..5211622815731.9902644-CDS-M-pyrifera_M_contig121244:26..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121244 27..521 -
1692277543.2032437-CDS-M-pyrifera_M_contig121244:26..5211692277543.2032437-CDS-M-pyrifera_M_contig121244:26..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121244 27..521 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.0029275-UTR-M-pyrifera_M_contig121244:521..5331622815732.0029275-UTR-M-pyrifera_M_contig121244:521..533Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121244 522..533 -
1692277543.2134023-UTR-M-pyrifera_M_contig121244:521..5331692277543.2134023-UTR-M-pyrifera_M_contig121244:521..533Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121244 522..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121244.4376.1prot_M-pyrifera_M_contig121244.4376.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121244 27..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121244.4376.1

>prot_M-pyrifera_M_contig121244.4376.1 ID=prot_M-pyrifera_M_contig121244.4376.1|Name=mRNA_M-pyrifera_M_contig121244.4376.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
MLALPQELERQPRYLFDGGSGQRVELQFKKPTVVFAAFEYNNTGAWSFSQ
GRSPRDHGWRKLANAAYRGTSNGTVKDKPHFASIYYCEFQPGQKLSGLPP
WWLCLAIMDANAARQIPGFQAGSSGPITVPSTYSYEAETTRARPLHVPEF
QNKRQWAQWQETQRQ
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mRNA from alignment at M-pyrifera_M_contig121244:27..533-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121244.4376.1 ID=mRNA_M-pyrifera_M_contig121244.4376.1|Name=mRNA_M-pyrifera_M_contig121244.4376.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig121244:27..533- (Macrocystis pyrifera P11B4 male)
CGCGATTACCAGATGCTCGCGTTACCACAGGAACTTGAACGACAGCCTCG CTATCTGTTTGACGGTGGTAGCGGTCAGCGTGTCGAACTGCAGTTCAAAA AGCCAACCGTGGTCTTCGCGGCGTTCGAGTACAACAACACCGGTGCCTGG TCATTTTCCCAAGGACGCTCCCCCCGCGACCATGGCTGGCGAAAGCTCGC TAACGCCGCCTATCGGGGCACGAGTAATGGCACTGTGAAAGACAAACCTC ACTTCGCTTCGATCTATTACTGTGAATTTCAGCCCGGCCAGAAACTCTCG GGACTGCCTCCCTGGTGGTTATGCCTGGCGATCATGGACGCGAACGCCGC CCGACAGATTCCCGGTTTTCAGGCAGGCAGCTCGGGGCCAATCACCGTGC CTTCCACTTACTCTTACGAGGCCGAAACCACCCGCGCCCGTCCGCTGCAC GTACCCGAATTTCAAAACAAGCGTCAATGGGCCCAGTGGCAGGAGACGCA ACGCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121244:27..533-

>mRNA_M-pyrifera_M_contig121244.4376.1 ID=mRNA_M-pyrifera_M_contig121244.4376.1|Name=mRNA_M-pyrifera_M_contig121244.4376.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig121244:27..533- (Macrocystis pyrifera P11B4 male)
ATGCTCGCGTTACCACAGGAACTTGAACGACAGCCTCGCTATCTGTTTGA
CGGTGGTAGCGGTCAGCGTGTCGAACTGCAGTTCAAAAAGCCAACCGTGG
TCTTCGCGGCGTTCGAGTACAACAACACCGGTGCCTGGTCATTTTCCCAA
GGACGCTCCCCCCGCGACCATGGCTGGCGAAAGCTCGCTAACGCCGCCTA
TCGGGGCACGAGTAATGGCACTGTGAAAGACAAACCTCACTTCGCTTCGA
TCTATTACTGTGAATTTCAGCCCGGCCAGAAACTCTCGGGACTGCCTCCC
TGGTGGTTATGCCTGGCGATCATGGACGCGAACGCCGCCCGACAGATTCC
CGGTTTTCAGGCAGGCAGCTCGGGGCCAATCACCGTGCCTTCCACTTACT
CTTACGAGGCCGAAACCACCCGCGCCCGTCCGCTGCACGTACCCGAATTT
CAAAACAAGCGTCAATGGGCCCAGTGGCAGGAGACGCAACGCCAGATGCT
CGCGTTACCACAGGAACTTGAACGACAGCCTCGCTATCTGTTTGACGGTG
GTAGCGGTCAGCGTGTCGAACTGCAGTTCAAAAAGCCAACCGTGGTCTTC
GCGGCGTTCGAGTACAACAACACCGGTGCCTGGTCATTTTCCCAAGGACG
CTCCCCCCGCGACCATGGCTGGCGAAAGCTCGCTAACGCCGCCTATCGGG
GCACGAGTAATGGCACTGTGAAAGACAAACCTCACTTCGCTTCGATCTAT
TACTGTGAATTTCAGCCCGGCCAGAAACTCTCGGGACTGCCTCCCTGGTG
GTTATGCCTGGCGATCATGGACGCGAACGCCGCCCGACAGATTCCCGGTT
TTCAGGCAGGCAGCTCGGGGCCAATCACCGTGCCTTCCACTTACTCTTAC
GAGGCCGAAACCACCCGCGCCCGTCCGCTGCACGTACCCGAATTTCAAAA
CAAGCGTCAATGGGCCCAGTGGCAGGAGACGCAACGCCAG
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