mRNA_M-pyrifera_M_contig121183.4365.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121183.4365.1
Unique NamemRNA_M-pyrifera_M_contig121183.4365.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121183.4365.1 vs. uniprot
Match: A0A4R7HY29_9ACTN (Multidrug efflux pump subunit AcrB n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7HY29_9ACTN)

HSP 1 Score: 204 bits (520), Expect = 1.500e-58
Identity = 112/151 (74.17%), Postives = 128/151 (84.77%), Query Frame = 1 
Query:    1 ITLFGLILTLGLLVDDAIVISEPIDANRNASKDPLGVVRTAINRVGSASLAGTLTTVLVFGPMLFVSGVLGEFIRAIPATVIITLLLSYLFSVIFITAVARPFLLKGSSASNPITKAEKFIGRKLGQLAEYPSSHGAKGLVVGAVVAVGAL 453
            ITLFGLILTLGLLVDDAIVISE IDANR  S DP+GVVRTAINRVGSAS AGTLTTVLVF P+ FV GVLGEFIRAIP TVI+TLLLS+LFS++FI+A+++PF L+G    NPI +AE+   R LG+LAEYPSSHGAKG+ VG  + VGAL
Sbjct:  359 ITLFGLILTLGLLVDDAIVISEAIDANRGESDDPIGVVRTAINRVGSASFAGTLTTVLVFAPLAFVGGVLGEFIRAIPITVIVTLLLSFLFSIVFISALSKPFFLRGKHPHNPIIRAEEAAARGLGRLAEYPSSHGAKGIGVGIGIFVGAL 509
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BLAST of mRNA_M-pyrifera_M_contig121183.4365.1 vs. uniprot
Match: A0A812RNS2_9DINO (MdtB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RNS2_9DINO)

HSP 1 Score: 204 bits (519), Expect = 4.590e-58
Identity = 112/151 (74.17%), Postives = 128/151 (84.77%), Query Frame = 1 
Query:    1 ITLFGLILTLGLLVDDAIVISEPIDANRNASKDPLGVVRTAINRVGSASLAGTLTTVLVFGPMLFVSGVLGEFIRAIPATVIITLLLSYLFSVIFITAVARPFLLKGSSASNPITKAEKFIGRKLGQLAEYPSSHGAKGLVVGAVVAVGAL 453
            ITLFGLILTLGLLVDDAIVISE IDANR  S DP+GVVRTAINRVGSAS AGTLTTVLVF P+ FV GVLGEFIRAIP TVI+TLLLS+LFS++FI+A+++PF L+G    NPI +AE+   R LG+LAEYPSSHGAKG+ VG  + VGAL
Sbjct:  962 ITLFGLILTLGLLVDDAIVISEAIDANRGESDDPIGVVRTAINRVGSASAAGTLTTVLVFAPLAFVGGVLGEFIRAIPITVIVTLLLSFLFSIVFISALSKPFFLRGKHPHNPIIRAEEAAARGLGRLAEYPSSHGAKGIGVGIGIFVGAL 1112
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BLAST of mRNA_M-pyrifera_M_contig121183.4365.1 vs. uniprot
Match: A0A351ETA4_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351ETA4_9ACTN)

HSP 1 Score: 173 bits (439), Expect = 2.340e-48
Identity = 99/152 (65.13%), Postives = 118/152 (77.63%), Query Frame = 1 
Query:    1 ITLFGLILTLGLLVDDAIVISEPIDANRNASKDP-----LGVVRTAINRVGSASLAGTLTTVLVFGPMLFVSGVLGEFIRAIPATVIITLLLSYLFSVIFITAVARPFLLKGSSASNPITKAEKFIGRKLGQLAEYPSSHGAKGLVVGAVVA 441
            ITLFGLILTLGLLVDDAIVISE IDANR+          +GVVR AI+RVG+AS AGTLTTV+VF PMLF+ G+LGEFIR IPATV+ITLLLS+LFSV+FI  + R FLLKG   +NPI +AEK +    G+LA YPS +G KG +VG ++A
Sbjct:  337 ITLFGLILTLGLLVDDAIVISESIDANRDEPDSSEEIKSVGVVRRAIDRVGAASFAGTLTTVVVFSPMLFIGGILGEFIRPIPATVMITLLLSFLFSVVFIPVIGRLFLLKGQKPNNPIIRAEKSVAAAAGRLAAYPSGNGPKGWLVGLLLA 488
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BLAST of mRNA_M-pyrifera_M_contig121183.4365.1 vs. uniprot
Match: A0A2E3TTC6_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A2E3TTC6_9ACTN)

HSP 1 Score: 171 bits (434), Expect = 1.040e-46
Identity = 100/148 (67.57%), Postives = 117/148 (79.05%), Query Frame = 1 
Query:    1 ITLFGLILTLGLLVDDAIVISEPIDANR-NASKDP----LGVVRTAINRVGSASLAGTLTTVLVFGPMLFVSGVLGEFIRAIPATVIITLLLSYLFSVIFITAVARPFLLKGSSASNPITKAEKFIGRKLGQLAEYPSSHGAKGLVVG 429
            ITLFGLILTLGLLVDDAIVISE ID++R N S       LGVVRTA+ RVGSASLAGTLTTV+VF PMLFV G+LGEFIR+IPATVIITL+LS++FS++FI AVAR FLLKG  ++NPI + EK +    G+LA YP  +G KG   G
Sbjct:  341 ITLFGLILTLGLLVDDAIVISESIDSSRDNPSSQEVGRRLGVVRTALERVGSASLAGTLTTVVVFSPMLFVGGILGEFIRSIPATVIITLILSFIFSIVFIPAVARVFLLKGGPSNNPIVRGEKVVAGAAGRLAAYPWRNGWKGRFAG 488
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BLAST of mRNA_M-pyrifera_M_contig121183.4365.1 vs. uniprot
Match: A0A7Y1ZXP9_9ACTN (Efflux RND transporter permease subunit n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZXP9_9ACTN)

HSP 1 Score: 169 bits (427), Expect = 9.210e-46
Identity = 97/148 (65.54%), Postives = 116/148 (78.38%), Query Frame = 1 
Query:    1 ITLFGLILTLGLLVDDAIVISEPIDANRNASKD-----PLGVVRTAINRVGSASLAGTLTTVLVFGPMLFVSGVLGEFIRAIPATVIITLLLSYLFSVIFITAVARPFLLKGSSASNPITKAEKFIGRKLGQLAEYPSSHGAKGLVVG 429
            ITLFGLILTLGLLVDDAIVISE IDA+R+   +      LGVVRTA+ RVGSASLAGTLTTV+VF PMLF+ G+LGEFIR+IPATVIITLLLS+ FS++FI AVAR FLL+   + NPI + EK + +  G+LA YP  +G KG + G
Sbjct:  340 ITLFGLILTLGLLVDDAIVISESIDASRDDPDEIEETRSLGVVRTALERVGSASLAGTLTTVVVFSPMLFIGGILGEFIRSIPATVIITLLLSFTFSIVFIPAVARVFLLRAGPSRNPIVRGEKRLSQAAGRLAAYPWRNGWKGRLTG 487
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BLAST of mRNA_M-pyrifera_M_contig121183.4365.1 vs. uniprot
Match: UPI000E3232FD (efflux RND transporter permease subunit n=1 Tax=Euzebya tangerina TaxID=591198 RepID=UPI000E3232FD)

HSP 1 Score: 165 bits (418), Expect = 1.570e-44
Identity = 99/162 (61.11%), Postives = 121/162 (74.69%), Query Frame = 1 
Query:    1 ITLFGLILTLGLLVDDAIVISEPIDANRNASKDP------LGVVRTAINRVGSASLAGTLTTVLVFGPMLFVSGVLGEFIRAIPATVIITLLLSYLFSVIFITAVARPFLLKGSSASNPITKAEKFIGRKLGQLAEYPSSHGAKGLVVG------AVVAVGA 450
            ITLFGLILTLGLLVDDAIVISE IDANR    DP      LGV+RTA+ RVGSASLAGTLTTV+VF P+LFVSG++GEF+  IP TVI+TLL S+LFS++FI   AR FLL+G++  NPI  A + + +  G+LA YPS +G KG +VG      A +A+GA
Sbjct:  349 ITLFGLILTLGLLVDDAIVISESIDANRE-EPDPREDDERLGVIRTALARVGSASLAGTLTTVVVFSPLLFVSGIIGEFVSPIPTTVIMTLLASFLFSILFIPVAARAFLLRGTAGRNPIVLALRAMAKAAGRLAAYPSGNGWKGWLVGLGLAGFAFIAIGA 509
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BLAST of mRNA_M-pyrifera_M_contig121183.4365.1 vs. uniprot
Match: A0A7Y2IIK1_9ACTN (Efflux RND transporter permease subunit n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IIK1_9ACTN)

HSP 1 Score: 151 bits (381), Expect = 1.620e-39
Identity = 84/146 (57.53%), Postives = 109/146 (74.66%), Query Frame = 1 
Query:    1 ITLFGLILTLGLLVDDAIVISEPIDANRNASKDPLGVVRTAINRVGSASLAGTLTTVLVFGPMLFVSGVLGEFIRAIPATVIITLLLSYLFSVIFITAVARPFLLKGSSASNPITKAEKFIGRKLGQLAEYPSSHGAKGLVVGAVV 438
            ITLFGLILTLGLLVDDAIVI E IDA +        ++  ++ RV  AS+AGTLTTVLVFGP+LF+ G+LGEFIRAIP TVIITLL+SY+FSV+FI A+ +  LL+G  + +PI   +K + R+LG+LA +P+  G  G+ VG V+
Sbjct:  353 ITLFGLILTLGLLVDDAIVIGESIDATKIEGGTQERILGVSLTRVALASMAGTLTTVLVFGPLLFIGGILGEFIRAIPVTVIITLLVSYIFSVVFIPAIGKFVLLRGVPSRSPIVNVQKSMARQLGRLAAFPARGGIAGVAVGMVL 498
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BLAST of mRNA_M-pyrifera_M_contig121183.4365.1 vs. uniprot
Match: A0A7Y2DN88_9ACTN (MMPL family transporter n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DN88_9ACTN)

HSP 1 Score: 143 bits (361), Expect = 8.160e-37
Identity = 82/148 (55.41%), Postives = 104/148 (70.27%), Query Frame = 1 
Query:    1 ITLFGLILTLGLLVDDAIVISEPIDANRNASKDPLGVVRTAINRVGSASLAGTLTTVLVFGPMLFVSGVLGEFIRAIPATVIITLLLSYLFSVIFITAVARPFLLKGSSASNPITKAEKFIGRKLGQLAEYPSSHGAKGLVVGAVVAV 444
            ITLFGLILTLGLLVDDAIVI E IDA +        ++  ++ RV  ASLAGTLTTVLVFGP+ F+ G+LGEFIRAIP TVIITL+ SY+ S++FI  + +  LL G    NPI   EK +    G+LA +P+  GA G+VVG ++A+
Sbjct:  348 ITLFGLILTLGLLVDDAIVIGESIDATKVEGGTKERILGVSLTRVALASLAGTLTTVLVFGPLAFIGGILGEFIRAIPVTVIITLIASYIASIVFIPTIGKYVLLAGGHPRNPIAALEKKLSVWTGRLASFPARRGAFGIVVGVLLAL 495
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BLAST of mRNA_M-pyrifera_M_contig121183.4365.1 vs. uniprot
Match: A0A520Y2P7_9ACTN (Efflux RND transporter permease subunit n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y2P7_9ACTN)

HSP 1 Score: 125 bits (314), Expect = 1.710e-30
Identity = 71/142 (50.00%), Postives = 94/142 (66.20%), Query Frame = 1 
Query:    1 ITLFGLILTLGLLVDDAIVISEPIDANRNASKDPLGVVRTAINRVGSASLAGTLTTVLVFGPMLFVSGVLGEFIRAIPATVIITLLLSYLFSVIFITAVARPFLLKGSSASNPITKAEKFIGRKLGQLAEYPSSHGAKGLVV 426
            I+LF LIL LGL VDDAIVI+E IDA R    + L ++R AI RVGSAS++GTLTTVLVF PML + G+LG FIR +P TVI+ LL S + S++FI   AR   L+   A  P+ + E  + R +  L   P + G KG+++
Sbjct:  321 ISLFALILALGLFVDDAIVITESIDAFREDGDEDLSIIRRAITRVGSASVSGTLTTVLVFAPMLLIGGILGGFIRILPITVILALLTSLILSLVFIPVAARYLTLRAPRADGPVVRVEAKLARAISSL---PGTRGRKGILI 459
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BLAST of mRNA_M-pyrifera_M_contig121183.4365.1 vs. uniprot
Match: A0A1F7QQ18_9BACT (SSD domain-containing protein n=1 Tax=Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_12_FULL_41_12 TaxID=1802138 RepID=A0A1F7QQ18_9BACT)

HSP 1 Score: 103 bits (256), Expect = 1.090e-22
Identity = 65/155 (41.94%), Postives = 97/155 (62.58%), Query Frame = 1 
Query:    1 ITLFGLILTLGLLVDDAIVISEPIDANRNASKDPLGVVRTAINRVGSASLAGTLTTVLVFGPMLFVSGVLGEFIRAIPATVIITLLLSYLFSVIFITAVARPFLLKGSSAS-NPITKAE-KFIGRKLGQLAEYPSSHGAKGL--VVGAVVAVGAL 453
            ITLFGL+L L L+VDD  +++E IDA RN  K+    V  AI +V  AS+ GTL T L F PMLF++G+LG FI+A+P T+II ++ S + S+  I  +++  +L G   + NPIT+AE +F    +  +     S   K L  V+ A++AVG++
Sbjct:  336 ITLFGLVLALSLIVDDTTIVAEAIDAARNRHKEKRQAVTDAIKKVARASMTGTLVTSLAFAPMLFITGILGSFIKALPITIIIAIISSLIISLSLIPFLSKKLILGGKGKNTNPITRAEARFKDMLVNNILRVKGSWKMKTLTLVISALLAVGSI 490
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121183.4365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4R7HY29_9ACTN1.500e-5874.17Multidrug efflux pump subunit AcrB n=1 Tax=Ilumato... [more]
A0A812RNS2_9DINO4.590e-5874.17MdtB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A351ETA4_9ACTN2.340e-4865.13Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A2E3TTC6_9ACTN1.040e-4667.57Uncharacterized protein n=1 Tax=Ilumatobacter sp. ... [more]
A0A7Y1ZXP9_9ACTN9.210e-4665.54Efflux RND transporter permease subunit n=1 Tax=Il... [more]
UPI000E3232FD1.570e-4461.11efflux RND transporter permease subunit n=1 Tax=Eu... [more]
A0A7Y2IIK1_9ACTN1.620e-3957.53Efflux RND transporter permease subunit n=1 Tax=Ac... [more]
A0A7Y2DN88_9ACTN8.160e-3755.41MMPL family transporter n=1 Tax=Acidimicrobiales b... [more]
A0A520Y2P7_9ACTN1.710e-3050.00Efflux RND transporter permease subunit n=1 Tax=Ac... [more]
A0A1F7QQ18_9BACT1.090e-2241.94SSD domain-containing protein n=1 Tax=Candidatus S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121183contigM-pyrifera_M_contig121183:3..455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.9
Seed ortholog evalue7e-11
Seed eggNOG ortholog1122201.AUAZ01000007_gene3585
Preferred nameacrD
KEGG koko:K18989
KEGG TC2.A.6.2.30
KEGG ModuleM00720
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EggNOG OGs1MU48@1224,1RMBN@1236,464R3@72275,COG0841@1,COG0841@2
COG Functional cat.V
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000
Exons1
Model size453
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.5171163-CDS-M-pyrifera_M_contig121183:2..4551622815731.5171163-CDS-M-pyrifera_M_contig121183:2..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121183 3..455 +
1692277543.0143354-CDS-M-pyrifera_M_contig121183:2..4551692277543.0143354-CDS-M-pyrifera_M_contig121183:2..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121183 3..455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121183.4365.1prot_M-pyrifera_M_contig121183.4365.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121183 3..455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121183.4365.1

>prot_M-pyrifera_M_contig121183.4365.1 ID=prot_M-pyrifera_M_contig121183.4365.1|Name=mRNA_M-pyrifera_M_contig121183.4365.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
ITLFGLILTLGLLVDDAIVISEPIDANRNASKDPLGVVRTAINRVGSASL
AGTLTTVLVFGPMLFVSGVLGEFIRAIPATVIITLLLSYLFSVIFITAVA
RPFLLKGSSASNPITKAEKFIGRKLGQLAEYPSSHGAKGLVVGAVVAVGA
L
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mRNA from alignment at M-pyrifera_M_contig121183:3..455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121183.4365.1 ID=mRNA_M-pyrifera_M_contig121183.4365.1|Name=mRNA_M-pyrifera_M_contig121183.4365.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig121183:3..455+ (Macrocystis pyrifera P11B4 male)
ATCACGCTCTTCGGTCTGATCCTGACGCTCGGCCTGTTGGTCGACGACGC
GATCGTCATCTCCGAGCCGATCGATGCCAACCGCAACGCATCCAAGGACC
CGCTCGGCGTGGTCAGGACGGCGATCAACCGTGTGGGGTCCGCCTCGCTC
GCCGGAACCCTCACGACCGTGCTGGTCTTCGGCCCGATGCTCTTCGTGAG
CGGCGTGCTCGGTGAGTTCATCCGTGCCATTCCCGCCACGGTGATCATCA
CCCTGCTGTTGTCTTACCTGTTCTCGGTGATCTTCATCACGGCGGTCGCT
CGACCGTTCCTGCTGAAGGGTTCATCGGCCTCGAACCCCATCACGAAGGC
CGAGAAGTTCATCGGTCGCAAACTCGGCCAGCTCGCCGAATACCCATCGA
GTCACGGCGCCAAGGGCCTCGTCGTCGGTGCGGTCGTCGCCGTCGGCGCC
CTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121183:3..455+

>mRNA_M-pyrifera_M_contig121183.4365.1 ID=mRNA_M-pyrifera_M_contig121183.4365.1|Name=mRNA_M-pyrifera_M_contig121183.4365.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig121183:3..455+ (Macrocystis pyrifera P11B4 male)
ATCACGCTCTTCGGTCTGATCCTGACGCTCGGCCTGTTGGTCGACGACGC
GATCGTCATCTCCGAGCCGATCGATGCCAACCGCAACGCATCCAAGGACC
CGCTCGGCGTGGTCAGGACGGCGATCAACCGTGTGGGGTCCGCCTCGCTC
GCCGGAACCCTCACGACCGTGCTGGTCTTCGGCCCGATGCTCTTCGTGAG
CGGCGTGCTCGGTGAGTTCATCCGTGCCATTCCCGCCACGGTGATCATCA
CCCTGCTGTTGTCTTACCTGTTCTCGGTGATCTTCATCACGGCGGTCGCT
CGACCGTTCCTGCTGAAGGGTTCATCGGCCTCGAACCCCATCACGAAGGC
CGAGAAGTTCATCGGTCGCAAACTCGGCCAGCTCGCCGAATACCCATCGA
GTCACGGCGCCAAGGGCCTCGTCGTCGGTGCGGTCGTCGCCGTCGGCGCC
CTCATCACGCTCTTCGGTCTGATCCTGACGCTCGGCCTGTTGGTCGACGA
CGCGATCGTCATCTCCGAGCCGATCGATGCCAACCGCAACGCATCCAAGG
ACCCGCTCGGCGTGGTCAGGACGGCGATCAACCGTGTGGGGTCCGCCTCG
CTCGCCGGAACCCTCACGACCGTGCTGGTCTTCGGCCCGATGCTCTTCGT
GAGCGGCGTGCTCGGTGAGTTCATCCGTGCCATTCCCGCCACGGTGATCA
TCACCCTGCTGTTGTCTTACCTGTTCTCGGTGATCTTCATCACGGCGGTC
GCTCGACCGTTCCTGCTGAAGGGTTCATCGGCCTCGAACCCCATCACGAA
GGCCGAGAAGTTCATCGGTCGCAAACTCGGCCAGCTCGCCGAATACCCAT
CGAGTCACGGCGCCAAGGGCCTCGTCGTCGGTGCGGTCGTCGCCGTCGGC
GCCCTC
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