mRNA_M-pyrifera_M_contig121148.4350.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121148.4350.1
Unique NamemRNA_M-pyrifera_M_contig121148.4350.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121148.4350.1 vs. uniprot
Match: A0A2D9FPW7_9BACT (Uncharacterized protein n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FPW7_9BACT)

HSP 1 Score: 187 bits (475), Expect = 2.260e-55
Identity = 93/177 (52.54%), Postives = 119/177 (67.23%), Query Frame = 1 
Query:    1 DFNEVPEDYLSLYKSLDLGDEWDAIEIHLEGRERPYVINRIA--KANNTLLAD-WHFIFKSVDQGKTWENLSKNTGVGISEFLYVSKEHPNQIWTGGWNNILYPYLAKXXXXXXXXXXXXENVFFNTNANVYAVTVSRKNEKVVLAGFGGGVSAANVIRKSTDGGETWETVLEGYYI 522
            D++E+PE+Y+SLY+S D G  W++I I L   E+P+V+ RIA  K++N L AD    IF S + G+TW N      VG SEFLYVSK+HPNQIWTGGWNNI  PYL K            + ++FN++ANVY   V  +N++ VL G GG V +ANVIRKS DGG+TW TVLEGY I
Sbjct:  105 DYHELPENYVSLYRSEDAGRSWESIAIELTDMEKPFVLTRIAEQKSSNDLFADAGSLIFTSTNNGETWFNQIDRELVGFSEFLYVSKDHPNQIWTGGWNNIFSPYLVKSEDGGKTWADLNQEIYFNSDANVYGAVVDPENDETVLLGLGGAVESANVIRKSEDGGDTWTTVLEGYNI 281
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BLAST of mRNA_M-pyrifera_M_contig121148.4350.1 vs. uniprot
Match: A0A0S8GPI9_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium SM23_30 TaxID=1703411 RepID=A0A0S8GPI9_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 3.840e-5
Identity = 40/122 (32.79%), Postives = 59/122 (48.36%), Query Frame = 1 
Query:  163 IFKSVDQGKTWENLSKNTGVGISEFLYVSKEHPNQIWTGGWN----NILYPYLAKXXXXXXXXXXXXENVFFNTNANVYAVTVSRKNEKVVLAGFGGGVSAANVIR---KSTDGGETWETVL 507
            I+K+V+ G TWE + +N        + VS  HPN IW G       +  Y Y   XXX         +N+  +   ++  V +  +N +VV A   G   ++N  R   K+TDGG+TWE VL
Sbjct:   95 IWKTVNNGLTWEPIFENESTFAIGDIAVSSSHPNIIWAGTGETQPRHSGYAYXXXXXXKSTDAGKSWQNMGLHDTHHIGKVIIDPENPEVVYAAAIGHFWSSNEERGVFKTTDGGKTWEKVL 216
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121148.4350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D9FPW7_9BACT2.260e-5552.54Uncharacterized protein n=2 Tax=Balneolaceae TaxID... [more]
A0A0S8GPI9_9BACT3.840e-532.79Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121148contigM-pyrifera_M_contig121148:5..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size522
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.7106037-CDS-M-pyrifera_M_contig121148:4..5261622815730.7106037-CDS-M-pyrifera_M_contig121148:4..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121148 5..526 +
1692277542.6124961-CDS-M-pyrifera_M_contig121148:4..5261692277542.6124961-CDS-M-pyrifera_M_contig121148:4..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121148 5..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121148.4350.1prot_M-pyrifera_M_contig121148.4350.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121148 5..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121148.4350.1

>prot_M-pyrifera_M_contig121148.4350.1 ID=prot_M-pyrifera_M_contig121148.4350.1|Name=mRNA_M-pyrifera_M_contig121148.4350.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
DFNEVPEDYLSLYKSLDLGDEWDAIEIHLEGRERPYVINRIAKANNTLLA
DWHFIFKSVDQGKTWENLSKNTGVGISEFLYVSKEHPNQIWTGGWNNILY
PYLAKSEDNGETWVTLNENVFFNTNANVYAVTVSRKNEKVVLAGFGGGVS
AANVIRKSTDGGETWETVLEGYYI
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mRNA from alignment at M-pyrifera_M_contig121148:5..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121148.4350.1 ID=mRNA_M-pyrifera_M_contig121148.4350.1|Name=mRNA_M-pyrifera_M_contig121148.4350.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig121148:5..526+ (Macrocystis pyrifera P11B4 male)
GATTTTAACGAAGTGCCAGAGGATTATTTAAGTTTGTATAAAAGTTTAGA
CTTAGGAGATGAATGGGATGCTATAGAAATTCATTTAGAGGGTCGAGAAA
GACCGTATGTGATTAATAGAATAGCTAAAGCTAATAATACTCTACTAGCT
GATTGGCATTTTATATTTAAATCTGTCGATCAGGGGAAAACATGGGAAAA
CTTGTCCAAAAATACTGGAGTTGGGATATCCGAATTCTTATATGTAAGTA
AAGAACATCCCAACCAAATATGGACCGGGGGCTGGAATAATATTTTATAT
CCATATTTGGCTAAGTCAGAGGACAACGGCGAAACATGGGTAACTTTAAA
TGAAAATGTGTTTTTCAATACTAATGCCAATGTTTACGCAGTTACTGTTT
CCCGAAAGAATGAAAAAGTGGTCTTGGCAGGTTTTGGGGGTGGTGTGAGT
GCAGCCAATGTAATTCGGAAATCAACGGACGGTGGGGAAACTTGGGAGAC
CGTTTTGGAGGGATATTATATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121148:5..526+

>mRNA_M-pyrifera_M_contig121148.4350.1 ID=mRNA_M-pyrifera_M_contig121148.4350.1|Name=mRNA_M-pyrifera_M_contig121148.4350.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig121148:5..526+ (Macrocystis pyrifera P11B4 male)
GATTTTAACGAAGTGCCAGAGGATTATTTAAGTTTGTATAAAAGTTTAGA
CTTAGGAGATGAATGGGATGCTATAGAAATTCATTTAGAGGGTCGAGAAA
GACCGTATGTGATTAATAGAATAGCTAAAGCTAATAATACTCTACTAGCT
GATTGGCATTTTATATTTAAATCTGTCGATCAGGGGAAAACATGGGAAAA
CTTGTCCAAAAATACTGGAGTTGGGATATCCGAATTCTTATATGTAAGTA
AAGAACATCCCAACCAAATATGGACCGGGGGCTGGAATAATATTTTATAT
CCATATTTGGCTAAGTCAGAGGACAACGGCGAAACATGGGTAACTTTAAA
TGAAAATGTGTTTTTCAATACTAATGCCAATGTTTACGCAGTTACTGTTT
CCCGAAAGAATGAAAAAGTGGTCTTGGCAGGTTTTGGGGGTGGTGTGAGT
GCAGCCAATGTAATTCGGAAATCAACGGACGGTGGGGAAACTTGGGAGAC
CGTTTTGGAGGGATATTATATTGATTTTAACGAAGTGCCAGAGGATTATT
TAAGTTTGTATAAAAGTTTAGACTTAGGAGATGAATGGGATGCTATAGAA
ATTCATTTAGAGGGTCGAGAAAGACCGTATGTGATTAATAGAATAGCTAA
AGCTAATAATACTCTACTAGCTGATTGGCATTTTATATTTAAATCTGTCG
ATCAGGGGAAAACATGGGAAAACTTGTCCAAAAATACTGGAGTTGGGATA
TCCGAATTCTTATATGTAAGTAAAGAACATCCCAACCAAATATGGACCGG
GGGCTGGAATAATATTTTATATCCATATTTGGCTAAGTCAGAGGACAACG
GCGAAACATGGGTAACTTTAAATGAAAATGTGTTTTTCAATACTAATGCC
AATGTTTACGCAGTTACTGTTTCCCGAAAGAATGAAAAAGTGGTCTTGGC
AGGTTTTGGGGGTGGTGTGAGTGCAGCCAATGTAATTCGGAAATCAACGG
ACGGTGGGGAAACTTGGGAGACCGTTTTGGAGGGATATTATATT
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