mRNA_M-pyrifera_M_contig12110.4346.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12110.4346.1
Unique NamemRNA_M-pyrifera_M_contig12110.4346.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12110.4346.1 vs. uniprot
Match: D7G1Z1_ECTSI (C2H2 and CCCH zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Z1_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.090e-43
Identity = 69/93 (74.19%), Postives = 78/93 (83.87%), Query Frame = 1
Query:    1 TSTLSTIYSQHEAHYETCHRNLCSTCGSSFPTHRLLDLHLSELHDSFFKAMAERRPMYVCLVEGCPDVFESSKKRHGHLVGVHRYPKSFDFTR 279
            T+T S++  +HE HYET HR+ C TCG SFPTHRLLDLHLSE HDSFF+AMAERRPMY CLVEGCP+VFESS KRH HLV  H YP+SFDF+R
Sbjct:   71 TATFSSL-KRHEEHYETSHRHRCFTCGRSFPTHRLLDLHLSEAHDSFFRAMAERRPMYACLVEGCPEVFESSGKRHEHLVEAHLYPESFDFSR 162          
BLAST of mRNA_M-pyrifera_M_contig12110.4346.1 vs. uniprot
Match: A0A836CFJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFJ7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.680e-29
Identity = 50/80 (62.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:   40 HYETCHRNLCSTCGSSFPTHRLLDLHLSELHDSFFKAMAERRPMYVCLVEGCPDVFESSKKRHGHLVGVHRYPKSFDFTR 279
            HY+T HR+ C+TCG +F T RLLDLHLSELHDS+FKAMAE+R MY CLVEGC   F+ +  R  H++ VH YP++FDF R
Sbjct:  114 HYDTSHRHTCATCGRAFITPRLLDLHLSELHDSYFKAMAEKRHMYECLVEGCGKKFKDNNGRRAHMIAVHHYPRAFDFHR 193          
BLAST of mRNA_M-pyrifera_M_contig12110.4346.1 vs. uniprot
Match: A0A7L1YQP1_9PASS (ZN511 protein (Fragment) n=1 Tax=Scytalopus superciliaris TaxID=312124 RepID=A0A7L1YQP1_9PASS)

HSP 1 Score: 108 bits (269), Expect = 2.260e-27
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   31 HEAHYETCHRNLCSTCGSSFPTHRLLDLHLSELHDSFFKAMAERRPMYVCLVEGCPDVFESSKKRHGHLVGVHRYPKSFDFTR 279
            +E HY + HRN+CS C  SFP+  LLD+H+SE HDS F+ MAE++ MY CLVEGCP+ F SSK R  HLV VH YP  F F R
Sbjct:   47 YEHHYNSLHRNVCSFCKRSFPSGTLLDIHISEWHDSLFQVMAEKQNMYKCLVEGCPEKFRSSKDRKDHLVTVHLYPADFRFDR 129          
BLAST of mRNA_M-pyrifera_M_contig12110.4346.1 vs. uniprot
Match: A0A329T424_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T424_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.490e-27
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 1
Query:   31 HEAHYETCHRNLCSTCGSSFPTHRLLDLHLSELHDSFFKAMAERRPMYVCLVEGCPDVFESSKKRHGHLVGVHRYPKSFDF 273
            +E HYE  HRN+C  C  SF + RLLD+H+SE HD+FFK +++++PMYVCLV+GC + F+   KR  HL+ VH+YP+SF F
Sbjct:   74 YEEHYEMVHRNICRECSRSFLSLRLLDIHISETHDAFFKILSKKKPMYVCLVDGCSETFQHDNKRTRHLIQVHQYPESFSF 154          
BLAST of mRNA_M-pyrifera_M_contig12110.4346.1 vs. uniprot
Match: A0A7K7VNZ4_EUDEL (ZN511 protein (Fragment) n=1 Tax=Eudromia elegans TaxID=8805 RepID=A0A7K7VNZ4_EUDEL)

HSP 1 Score: 106 bits (265), Expect = 8.780e-27
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   31 HEAHYETCHRNLCSTCGSSFPTHRLLDLHLSELHDSFFKAMAERRPMYVCLVEGCPDVFESSKKRHGHLVGVHRYPKSFDFTR 279
            +E HY   HRN+CS+C  SFP+ RLLD+HLSE HDS F+ +AE++ MY CLVEGC + F+SSK R  HLV VH YP  F F +
Sbjct:   47 YEHHYNALHRNVCSSCKRSFPSGRLLDIHLSEWHDSLFQVLAEKQNMYKCLVEGCTEKFKSSKDRKEHLVTVHLYPADFRFDK 129          
BLAST of mRNA_M-pyrifera_M_contig12110.4346.1 vs. uniprot
Match: A0A7L3X8A3_9AVES (ZN511 protein (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7L3X8A3_9AVES)

HSP 1 Score: 107 bits (268), Expect = 1.030e-26
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   31 HEAHYETCHRNLCSTCGSSFPTHRLLDLHLSELHDSFFKAMAERRPMYVCLVEGCPDVFESSKKRHGHLVGVHRYPKSFDFTR 279
            +E HY T HRN+CS C  SFP+  LLD+H+SE HDS F+ MAE++ MY CLVEGC + F+SSK+R  HLV VH YP  F F R
Sbjct:   98 YEHHYNTLHRNVCSFCKRSFPSGHLLDIHISEWHDSLFQIMAEKQNMYKCLVEGCAEKFKSSKERKDHLVTVHLYPADFRFDR 180          
BLAST of mRNA_M-pyrifera_M_contig12110.4346.1 vs. uniprot
Match: G4YTN0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YTN0_PHYSP)

HSP 1 Score: 107 bits (267), Expect = 1.110e-26
Identity = 43/81 (53.09%), Postives = 61/81 (75.31%), Query Frame = 1
Query:   31 HEAHYETCHRNLCSTCGSSFPTHRLLDLHLSELHDSFFKAMAERRPMYVCLVEGCPDVFESSKKRHGHLVGVHRYPKSFDF 273
            +E HY+  HRN+C  C  SF + RLLD+H+SE HD+FFK +++++P+YVCLV+GCP  F+   KR  HL+ VH+YP+SF F
Sbjct:   64 YEEHYDMLHRNICRECSRSFLSLRLLDIHISETHDAFFKILSKKKPLYVCLVDGCPKTFQHDDKRTRHLIQVHQYPESFSF 144          
BLAST of mRNA_M-pyrifera_M_contig12110.4346.1 vs. uniprot
Match: A0A833WQA5_PHYIN (Putative C2H2-type domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WQA5_PHYIN)

HSP 1 Score: 107 bits (266), Expect = 1.850e-26
Identity = 43/83 (51.81%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   25 SQHEAHYETCHRNLCSTCGSSFPTHRLLDLHLSELHDSFFKAMAERRPMYVCLVEGCPDVFESSKKRHGHLVGVHRYPKSFDF 273
            S +E HY+  HRN+C  C  SF + RLLD+H+SE HD++FK +++++PMYVCLV+GCP+ F+   KR  HL+ VH+YP +F F
Sbjct:   72 SAYEEHYDMMHRNICRECSRSFLSLRLLDIHISETHDAYFKILSKKKPMYVCLVDGCPETFQHDDKRTEHLIRVHQYPGTFSF 154          
BLAST of mRNA_M-pyrifera_M_contig12110.4346.1 vs. uniprot
Match: A0A7K9F391_STEPR (ZN511 protein (Fragment) n=9 Tax=Charadriiformes TaxID=8906 RepID=A0A7K9F391_STEPR)

HSP 1 Score: 107 bits (266), Expect = 2.310e-26
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   31 HEAHYETCHRNLCSTCGSSFPTHRLLDLHLSELHDSFFKAMAERRPMYVCLVEGCPDVFESSKKRHGHLVGVHRYPKSFDFTR 279
            +E HY T HRN+CS C  SFP+  LLD+H+SE HDS F+ MAE++ MY CLVEGC + F+SSK R  HLV VH YP  F F R
Sbjct:  104 YEHHYNTLHRNVCSFCKRSFPSGHLLDIHISEWHDSLFQIMAEKQNMYKCLVEGCAEKFKSSKDRKDHLVTVHLYPADFRFDR 186          
BLAST of mRNA_M-pyrifera_M_contig12110.4346.1 vs. uniprot
Match: A0A852KRB1_UROIN (ZN511 protein (Fragment) n=2 Tax=Coliidae TaxID=57385 RepID=A0A852KRB1_UROIN)

HSP 1 Score: 105 bits (262), Expect = 2.660e-26
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   31 HEAHYETCHRNLCSTCGSSFPTHRLLDLHLSELHDSFFKAMAERRPMYVCLVEGCPDVFESSKKRHGHLVGVHRYPKSFDFTR 279
            +E HY T HRN+CS C  SFP+  LLD+H+SE HDS F+ +AE++ MY CLVEGC + F SSK R  HLV VH YP  F F R
Sbjct:   47 YEHHYNTLHRNVCSFCKCSFPSGHLLDIHISEWHDSLFQILAEKQNMYKCLVEGCAEKFRSSKDRKDHLVTVHLYPADFRFDR 129          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12110.4346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Z1_ECTSI1.090e-4374.19C2H2 and CCCH zinc finger protein n=1 Tax=Ectocarp... [more]
A0A836CFJ7_9STRA6.680e-2962.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7L1YQP1_9PASS2.260e-2759.04ZN511 protein (Fragment) n=1 Tax=Scytalopus superc... [more]
A0A329T424_9STRA7.490e-2754.32Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A7K7VNZ4_EUDEL8.780e-2757.83ZN511 protein (Fragment) n=1 Tax=Eudromia elegans ... [more]
A0A7L3X8A3_9AVES1.030e-2659.04ZN511 protein (Fragment) n=4 Tax=Neognathae TaxID=... [more]
G4YTN0_PHYSP1.110e-2653.09Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A833WQA5_PHYIN1.850e-2651.81Putative C2H2-type domain-containing protein n=2 T... [more]
A0A7K9F391_STEPR2.310e-2659.04ZN511 protein (Fragment) n=9 Tax=Charadriiformes T... [more]
A0A852KRB1_UROIN2.660e-2657.83ZN511 protein (Fragment) n=2 Tax=Coliidae TaxID=57... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12110contigM-pyrifera_M_contig12110:369..647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue6.2e-34
Seed eggNOG ortholog2880.D7G1Z1
Preferred nameZNF511
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0003674,GO:0003700,GO:0006355,GO:0006357,GO:0007275,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.zinc finger
EggNOG OGsKOG4173@1,KOG4173@2759
Ec32 ortholog descriptionC2H2 and CCCH zinc finger protein
Ec32 orthologEc-07_003620.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.4413135-CDS-M-pyrifera_M_contig12110:368..6471622815730.4413135-CDS-M-pyrifera_M_contig12110:368..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12110 369..647 +
1692277542.4972672-CDS-M-pyrifera_M_contig12110:368..6471692277542.4972672-CDS-M-pyrifera_M_contig12110:368..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12110 369..647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12110.4346.1prot_M-pyrifera_M_contig12110.4346.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12110 369..647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12110.4346.1

>prot_M-pyrifera_M_contig12110.4346.1 ID=prot_M-pyrifera_M_contig12110.4346.1|Name=mRNA_M-pyrifera_M_contig12110.4346.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
TSTLSTIYSQHEAHYETCHRNLCSTCGSSFPTHRLLDLHLSELHDSFFKA
MAERRPMYVCLVEGCPDVFESSKKRHGHLVGVHRYPKSFDFTR
back to top

mRNA from alignment at M-pyrifera_M_contig12110:369..647+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12110.4346.1 ID=mRNA_M-pyrifera_M_contig12110.4346.1|Name=mRNA_M-pyrifera_M_contig12110.4346.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig12110:369..647+ (Macrocystis pyrifera P11B4 male)
ACTTCCACGTTATCAACTATATATTCGCAGCACGAGGCGCACTACGAGAC GTGTCATCGAAACCTGTGCAGCACCTGCGGCTCTAGCTTCCCGACCCACC GCCTCCTCGACCTTCACCTAAGTGAGTTGCACGACTCCTTTTTCAAGGCC ATGGCAGAGCGGAGGCCGATGTACGTCTGCCTGGTAGAGGGCTGTCCGGA CGTGTTCGAGTCCTCTAAGAAGCGCCACGGGCACCTCGTTGGGGTGCACC GCTACCCGAAGAGCTTCGATTTCACCAGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12110:369..647+

>mRNA_M-pyrifera_M_contig12110.4346.1 ID=mRNA_M-pyrifera_M_contig12110.4346.1|Name=mRNA_M-pyrifera_M_contig12110.4346.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig12110:369..647+ (Macrocystis pyrifera P11B4 male)
ACTTCCACGTTATCAACTATATATTCGCAGCACGAGGCGCACTACGAGAC
GTGTCATCGAAACCTGTGCAGCACCTGCGGCTCTAGCTTCCCGACCCACC
GCCTCCTCGACCTTCACCTAAGTGAGTTGCACGACTCCTTTTTCAAGGCC
ATGGCAGAGCGGAGGCCGATGTACGTCTGCCTGGTAGAGGGCTGTCCGGA
CGTGTTCGAGTCCTCTAAGAAGCGCCACGGGCACCTCGTTGGGGTGCACC
GCTACCCGAAGAGCTTCGATTTCACCAGGACTTCCACGTTATCAACTATA
TATTCGCAGCACGAGGCGCACTACGAGACGTGTCATCGAAACCTGTGCAG
CACCTGCGGCTCTAGCTTCCCGACCCACCGCCTCCTCGACCTTCACCTAA
GTGAGTTGCACGACTCCTTTTTCAAGGCCATGGCAGAGCGGAGGCCGATG
TACGTCTGCCTGGTAGAGGGCTGTCCGGACGTGTTCGAGTCCTCTAAGAA
GCGCCACGGGCACCTCGTTGGGGTGCACCGCTACCCGAAGAGCTTCGATT
TCACCAGG
back to top