mRNA_M-pyrifera_M_contig120967.4311.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: H2YA27_CIOSA (RRM domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YA27_CIOSA) HSP 1 Score: 99.8 bits (247), Expect = 9.950e-24 Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 1
Query: 1 RSPRRSSPRRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRRAIRKRAS 324
RSPRR RR RSP+P TK+H+ N+++N+ KEH+ +IF YGKV++ ++ +R+G PRG AYV+F+D A+KA+ YMNGGQIDG+ V + P RR ++R S
Sbjct: 89 RSPRRPI-RRERSPTPKP--TKLHIGNLTKNINKEHVTEIFSYYGKVKSVDMPMERNGLPRGLAYVEFDDHTEAEKALKYMNGGQIDGQVVTLRSVLPIRRRPQRRPS 193
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: F6W3V6_CIOIN (RRM domain-containing protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6W3V6_CIOIN) HSP 1 Score: 97.4 bits (241), Expect = 3.970e-23 Identity = 52/107 (48.60%), Postives = 74/107 (69.16%), Query Frame = 1
Query: 1 RSPRRSSPRRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEF-----KNPPRRA 306
RSPRR RR RSP+P TK+HV N+++N+ KEH+ +IF YGKV+T ++ +R+G PRG AYV+F+D A KA+ +M+GGQIDG+ V + + PPRR+
Sbjct: 87 RSPRRPI-RRERSPTPKP--TKLHVGNLTKNINKEHVNEIFSYYGKVKTVDMPMERNGIPRGLAYVEFDDHTEADKALKFMDGGQIDGQVVAIRAVLPIRRRPPRRS 190
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A7RUM9_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RUM9_NEMVE) HSP 1 Score: 86.3 bits (212), Expect = 5.400e-20 Identity = 39/81 (48.15%), Postives = 62/81 (76.54%), Query Frame = 1
Query: 61 TKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDR-HGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPR 300
TK++VA+++RNV K+H+Q+IF YG+V+T ++ DR + RGFAYV++ D E +KA+ +M+GGQIDG+++ V+ PPR
Sbjct: 1 TKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQSVLPPR 81
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A4Y2FXP1_ARAVE (RNA-binding protein with serine-rich domain 1-B n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2FXP1_ARAVE) HSP 1 Score: 90.5 bits (223), Expect = 1.350e-19 Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 25 RRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVA--EDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVK---VEFKNPPRR 303
RR +SPSP TKI V+ ++RNV KEH+Q+IF TYG +R ++ DR RGFAYV+FE+ E A+KA++YM+GGQIDG++VK V+F P+R
Sbjct: 143 RRRKSPSPRL--TKIQVSKLTRNVTKEHVQEIFSTYGPLRNVDLVIDRDRPHLSRGFAYVEFENPEDAEKALNYMDGGQIDGQEVKASLVQFHPAPQR 238
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A369RYS5_9METZ (RNA-binding protein with serine-rich domain 1 n=2 Tax=Trichoplax TaxID=10227 RepID=A0A369RYS5_9METZ) HSP 1 Score: 90.1 bits (222), Expect = 2.990e-19 Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query: 58 ETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDR-HGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNP 294
+ KIH+ ++RN K+H+Q+IF YGKV+ +V DR +G PRGFAY++FE+ +SA+ A+ YMNGGQIDG+ V V P
Sbjct: 167 QCKIHLGRLTRNATKDHVQEIFSNYGKVKNVDVPTDRANGLPRGFAYIEFENGKSAENAIKYMNGGQIDGQAVTVALVLP 246
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A7J7JE00_BUGNE (RNPS1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JE00_BUGNE) HSP 1 Score: 89.4 bits (220), Expect = 3.100e-19 Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 1
Query: 25 RRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRH-GAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRR 303
+R R+PSP+ TKIH+ ++RNV K+H+Q+IF YG V+ E+ +R P G AYV+F D ESA KA YMNGGQIDG+++ V P RR
Sbjct: 105 KRRRTPSPLKA-TKIHIGKLTRNVTKDHIQEIFSVYGNVKLTELPMERKMNIPTGHAYVEFTDSESATKAEKYMNGGQIDGQEIVVRCVLPQRR 197
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A0R3RX65_9BILA (RRM domain-containing protein n=1 Tax=Elaeophora elaphi TaxID=1147741 RepID=A0A0R3RX65_9BILA) HSP 1 Score: 86.3 bits (212), Expect = 1.580e-18 Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 1 RSPRRSSPRRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAP--RGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRRAI 309
RSP ++SP R +P P ++ V N+SRNV KEHL +IF YG ++T E+ DR RG+ YV+FE E A+KA+ +M+GGQIDG++V E +PPR +
Sbjct: 69 RSPFQASPVRKATPPPR----RLCVRNLSRNVTKEHLSEIFSVYGSLKTCELPMDRQHTHLGRGYGYVEFEQPEDAEKALKHMDGGQIDGQEVTCELTHPPRSTL 169
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A8C2QW01_CAPHI (RNA-binding protein with serine-rich domain 1 n=1 Tax=Capra hircus TaxID=9925 RepID=A0A8C2QW01_CAPHI) HSP 1 Score: 87.4 bits (215), Expect = 1.680e-18 Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query: 34 RSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRR 303
R PSP TK+H+A ++RNV K+H+++IF T+GKVR ++ +R AYV+FE + A+KA+ YM+GGQIDG++++ PPRR
Sbjct: 123 RRPSPSPKPTKLHIARLTRNVTKDHIREIFSTFGKVRVIDMPVERMHPGLSDAYVEFETPDGAEKALKYMDGGQIDGQEIRATAVPPPRR 212
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A452GB38_CAPHI (RNA-binding protein with serine-rich domain 1 n=1 Tax=Capra hircus TaxID=9925 RepID=A0A452GB38_CAPHI) HSP 1 Score: 86.3 bits (212), Expect = 4.500e-18 Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 1
Query: 34 RSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRR 303
R PSP TK+H+A ++RNV K+H+++IF T+GKVR ++ R AYV+FE + A+KA+ YM+GGQIDG++++ PPRR
Sbjct: 144 RRPSPSPKPTKLHIARLTRNVTKDHIREIFSTFGKVRVIDMPVKRMHPGLSDAYVEFETPDGAEKALKYMDGGQIDGQEIRATAVPPPRR 233
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A7S2X9B6_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X9B6_9EUKA) HSP 1 Score: 85.1 bits (209), Expect = 6.960e-18 Identity = 40/81 (49.38%), Postives = 60/81 (74.07%), Query Frame = 1
Query: 61 TKIHVANISRNVRKEHLQDIFETYGKVRTAEVAED-RHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPR 300
T +HV N++RNV+KEHL++IF YGKV+ E+A D + P GFA+V+FE + A++A+ +M+ GQIDG K+ V++K PR
Sbjct: 55 TTLHVMNLTRNVQKEHLEEIFGVYGKVKEVEIALDPKVKLPLGFAFVEFESKDEAEEAIKFMDQGQIDGNKIHVKYKFVPR 135 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig120967.4311.1 >prot_M-pyrifera_M_contig120967.4311.1 ID=prot_M-pyrifera_M_contig120967.4311.1|Name=mRNA_M-pyrifera_M_contig120967.4311.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp RSPRRSSPRRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAback to top mRNA from alignment at M-pyrifera_M_contig120967:2..374+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig120967.4311.1 ID=mRNA_M-pyrifera_M_contig120967.4311.1|Name=mRNA_M-pyrifera_M_contig120967.4311.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=373bp|location=Sequence derived from alignment at M-pyrifera_M_contig120967:2..374+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig120967:2..374+ >mRNA_M-pyrifera_M_contig120967.4311.1 ID=mRNA_M-pyrifera_M_contig120967.4311.1|Name=mRNA_M-pyrifera_M_contig120967.4311.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig120967:2..374+ (Macrocystis pyrifera P11B4 male)back to top |