mRNA_M-pyrifera_M_contig12074.4270.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12074.4270.1
Unique NamemRNA_M-pyrifera_M_contig12074.4270.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12074.4270.1 vs. uniprot
Match: A0A6H5KN23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN23_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.890e-56
Identity = 174/415 (41.93%), Postives = 196/415 (47.23%), Query Frame = 1 
Query:   19 MEEVLYGDYNGHMRPLRLMYFSLDSRCLVADHPESVQEEVESHFCPHCNALCTTPEAQSNGNRCLQCLACPCCGCVLAPSPVSLEPCAPQPPXXXXXXXXXXXXXXXXSAPEYCLQCLYCQWTSEALGLVASEPA--------------------------ALIKAVAAG-----------------EKLRDGDLKAVDALLAGMKRMEDSRVTGSGGGXXXXXXRSRTGSAVXXXXXXXXXXGRRA-GAESWLPA-----TPANATGPWKVADIEEAVSLRNEAVKAASRSVTPSGASTAAPASTAVTKKEAEAPPAPWSPRGDTDGPDPSLWALTSGQETAGVAERLESWGWVRGERVGGSGDDVTASVGAXXXXXXXXXXXSGSAAERREWPRRVRLRTRLGKRCRKDLEAG 1116
            M EVLYGDYNG++RPL LMYFSLDSRCLVADHP SVQEEVESHFCPHC +   TP+A S  NRC  C  CPCC CVL PSPVSL+  A                    +   YCL+CLYCQWTSE  GLVA +PA                          AL++A                      + RD    A                  S          S T  AV             A G    LP+     TP     P KV+D+  AV+ R + V AASRSV       A P   A     A   P PW+ RGDTDGPDP+LW L+SG ETAG+AER+E   W    R          + G  XXXXXXXXXX          PRRVRLR RLGKRCRKDL  G
Sbjct:    1 MVEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAVSTENRCPHCFECPCCRCVLVPSPVSLDRSASS---------------FSSAGTSYCLRCLYCQWTSEDSGLVAQDPAGLAAXXXXXXXXXXXXXXXXXXXXXGALLEAAQQXXXXXXXXXXXXXXXXXXSRGRDRGRAAXXXXXXXXXXXXXXXDVDSSLFSSAASISSHTTRAVFAGCAVQVVRTLLAFGTCLQLPSFFFLLTPPL---PLKVSDLNNAVARRTQVVAAASRSV-------ALPQPPAAAGTPAAVSP-PWALRGDTDGPDPALWTLSSGHETAGLAERVEG-SWSSPPR---QSPPARGARGDGXXXXXXXXXXXXXXXXXXXVPRRVRLRARLGKRCRKDLALG 385
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BLAST of mRNA_M-pyrifera_M_contig12074.4270.1 vs. uniprot
Match: D7FRF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF1_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 9.140e-44
Identity = 163/394 (41.37%), Postives = 187/394 (47.46%), Query Frame = 1 
Query:   19 MEEVLYGDYNGHMRPLRLMYFSLDSRCLVADHPESVQEEVESHFCPHCNALCTTPEAQSNGNRCLQCLACPCCGCVLAPSPVSLEPCAPQPPXXXXXXXXXXXXXXXXSAPEYCLQCLYCQWTSEALGLVASEPAALIK---AVAAGEKLRDGDLKAVDALLAGMKRMEDSRVTGSGGGXXXXXXRSRTGSAVXXXXXXXXXXGRRAGAESWLPATPANAT---GPWK-VADIEEAVSLRNEAVKAASRSVTPSGASTAAPASTAVTKKEAEAPPAPWSPRGDTDGPDPSLWALTSGQETAGVAERLESWGWVRGERVGGSGDDVTASVGAXXXXXXXXXXXSGSAAERREWPRRVRLRTRLGKRCRKDLEAGRAGILIKATFNPLEGDSSGAK 1179
            M EVLYGDYNG++RPL LMYFSLDSRCLVADHP SVQEEVESHFCPHC +   TP+A S  N                  P      + +                                T  AL    + P  L +   AVA G   R            G +R    R      G XXXXX                     A A  W+           GP + V+D++EAV+ R + V AASRSV       A P   A T   A   P PW+ R DT GPDP+LW L+SG ETAG+AER+E   W    R          +   XXXXXXXXXXX          PRRVRLR R+GKRCRKDL AGR GILIKATFNPL+GDSS AK
Sbjct:    1 MAEVLYGDYNGYLRPLSLMYFSLDSRCLVADHPRSVQEEVESHFCPHCTSFFRTPDAMSAENS----------------GPARTRASSHR--------------------------------TQRAL----APPRPLERRRVAVATGAARRWSSALCSRRPSKGKRRPPSERGRRRVEGAXXXXXXXXXXXXXVPGFAPGARTAVAAAAAKWIRRCSLRRRVRPGPGRHVSDLDEAVARRAQVVVAASRSV-------ALPRPPAATAAAAAVSP-PWALREDTTGPDPALWTLSSGHETAGLAERVEG-PWSSPPR---QSPPARGARXXXXXXXXXXXXXXXXXXXXXXVPRRVRLRARVGKRCRKDLAAGRTGILIKATFNPLDGDSSTAK 330
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12074.4270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KN23_9PHAE1.890e-5641.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRF1_ECTSI9.140e-4441.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12074contigM-pyrifera_M_contig12074:5413..7830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1183
Cds size1164
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12074.4270.1prot_M-pyrifera_M_contig12074.4270.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12074 5413..7812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.9330719-CDS-M-pyrifera_M_contig12074:5412..59101622815726.9330719-CDS-M-pyrifera_M_contig12074:5412..5910Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12074 5413..5910 -
1692277540.8200724-CDS-M-pyrifera_M_contig12074:5412..59101692277540.8200724-CDS-M-pyrifera_M_contig12074:5412..5910Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12074 5413..5910 -
1622815726.9474013-CDS-M-pyrifera_M_contig12074:6203..66811622815726.9474013-CDS-M-pyrifera_M_contig12074:6203..6681Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12074 6204..6681 -
1692277540.8292742-CDS-M-pyrifera_M_contig12074:6203..66811692277540.8292742-CDS-M-pyrifera_M_contig12074:6203..6681Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12074 6204..6681 -
1622815726.960144-CDS-M-pyrifera_M_contig12074:7624..78121622815726.960144-CDS-M-pyrifera_M_contig12074:7624..7812Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12074 7625..7812 -
1692277540.8384604-CDS-M-pyrifera_M_contig12074:7624..78121692277540.8384604-CDS-M-pyrifera_M_contig12074:7624..7812Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12074 7625..7812 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.973553-UTR-M-pyrifera_M_contig12074:7812..78301622815726.973553-UTR-M-pyrifera_M_contig12074:7812..7830Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12074 7813..7830 -
1692277540.8478327-UTR-M-pyrifera_M_contig12074:7812..78301692277540.8478327-UTR-M-pyrifera_M_contig12074:7812..7830Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12074 7813..7830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12074.4270.1

>prot_M-pyrifera_M_contig12074.4270.1 ID=prot_M-pyrifera_M_contig12074.4270.1|Name=mRNA_M-pyrifera_M_contig12074.4270.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=388bp
MEEVLYGDYNGHMRPLRLMYFSLDSRCLVADHPESVQEEVESHFCPHCNA
LCTTPEAQSNGNRCLQCLACPCCGCVLAPSPVSLEPCAPQPPSSSSSCPS
SSPAGGGGSAPEYCLQCLYCQWTSEALGLVASEPAALIKAVAAGEKLRDG
DLKAVDALLAGMKRMEDSRVTGSGGGSGGTGGRSRTGSAVSGGGGGGGVG
GRRAGAESWLPATPANATGPWKVADIEEAVSLRNEAVKAASRSVTPSGAS
TAAPASTAVTKKEAEAPPAPWSPRGDTDGPDPSLWALTSGQETAGVAERL
ESWGWVRGERVGGSGDDVTASVGAGVGEGLGSRFGSGSAAERREWPRRVR
LRTRLGKRCRKDLEAGRAGILIKATFNPLEGDSSGAKA
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mRNA from alignment at M-pyrifera_M_contig12074:5413..7830-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12074.4270.1 ID=mRNA_M-pyrifera_M_contig12074.4270.1|Name=mRNA_M-pyrifera_M_contig12074.4270.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2418bp|location=Sequence derived from alignment at M-pyrifera_M_contig12074:5413..7830- (Macrocystis pyrifera P11B4 male)
AAAAGTGCTGCAACAGCGATGGAGGAGGTGCTCTATGGAGACTACAATGG
CCACATGCGGCCGCTGAGGCTGATGTACTTCTCGCTCGACAGCCGCTGCC
TGGTGGCTGACCACCCCGAAAGCGTCCAGGAGGAGGTGGAGTCTCACTTC
TGTCCACACTGCAATGCGCTGTGTACGACACCCGAGGCGCAGTCAAATGG
CAACAGGTTGGCGCGCTGTATACTCGCAGACGTGCTGTCCTGATCCCGAG
CAAATTGTTGAGTGTCGAGAGTTGTCCTTGTAACCCGTCTCCAATCTCGA
GCGCTGTCTCCGACCGTCGTTATTCGACGTGCAACTGTAATACTACTACT
TGAACGAACTACTCACAATACACATGGCATGCGAGTTCCAGGTGCACCTG
CTCCTGCACCAGGTACTCGTGGTAGAAGAGAAGCATGTCGTTGCCGCCGC
CCGCCGCCTACATATGATATGCTGGTACAGCACCACCACAGGTAAAACGT
ATCGTGAAGAGAAAGTGGATGAACGCAAGCCATATGCCTGGTTTATCTGG
TATGCGAGTACGAAGGCACCACCGTCCGAGATGTTTGCCCATGCCCTATC
TCCTCGGCCGCGCTGTCCCTTTGAACGTCCGCCTTGGCTCATCCGCACAC
CCTGTTGGTACGTAGGTGTGGTTGTTGTTGTTTTCTTCACATTAAACCGT
TCTTTCTACACGTCGACATCCAGCACAACCAGTGTCCGTGCCGATTCTTC
AATCCTAGAGAGATACAAGTTCTGTGGTCACAAAGCGGCGATACGGTGGT
ATCTCGGTCCCGACACATCAGTGATGGGGCGACAGCAGCTTTGCACCTTT
TTTTTGCTCCTGGTTGGTGTTTGCCACTTTTCTATTTTCGGAAAACGCCA
AACGCTTCCACAGCAGCAGCAGAGACCCGGGCCGTAGACTCATATGATAC
CTCAAAAACCACGAGTGCAAAATGGCACCTTTTGGCGCACACCAATCCAG
CAGGCAGTGACGTTTTTGCGCATAGCTATATACGTGGTAGCAGGTGTGCC
TGTCACATAAACCCGACTTCACCCCTACTCAGCGCTACACAACCCCCACC
TGACTTGACACTTTGCGTACTGCTACATCCCGCCGCCACTTCCACGCAGA
TGCCTCCAGTGCTTGGCATGCCCCTGCTGCGGCTGCGTCTTGGCCCCCTC
CCCAGTGAGCCTGGAGCCCTGCGCACCCCAGCCACCCTCCTCCTCCTCCT
CCTGCCCCTCCTCCTCTCCTGCCGGCGGTGGTGGTAGCGCGCCCGAGTAC
TGTCTGCAGTGCCTCTACTGCCAGTGGACCAGCGAGGCTTTGGGCCTGGT
AGCCTCGGAGCCAGCCGCCCTGATAAAAGCGGTGGCGGCGGGAGAGAAAT
TACGGGACGGTGATTTGAAGGCCGTCGATGCGCTCCTCGCAGGAATGAAG
CGGATGGAAGATTCGCGAGTGACTGGAAGCGGTGGTGGGAGTGGGGGGAC
GGGGGGAAGGTCGCGTACTGGGAGCGCCGTCAGCGGCGGTGGCGGTGGCG
GCGGTGTAGGTGGTAGGAGGGCAGGAGCGGAGAGCTGGTTGCCGGCGACT
CCTGCGAATGCGACGGGCCCTTGGAAGGTGAAGGTTGTTTCTGAACGTAG
TAGATACGCGAACTTCTAGTTGCGATACCGCTGCTGCCGTACATCCTGCA
GCAGGCGCAGCAGCACAATGCACCTTATCAAAAGTTGTCTGTTATCTGTG
ATACTCGCACTCTTTACCCTTTCTTGCGCCCGGCGTGTTTTTTTTTGTTC
CCTCTCGCCAGTGCCCAGCGAACGCGGCAGTCTTTTTCGTCGCAGACCCA
TGGCACCATGCACCCGCCCTGTACAGTTTTTTGTTCGTCGCCGCTCTCTT
GCCGCCTTGCGCTGTAAAAGGTCGCAGACATCGAGGAAGCGGTGTCGCTG
AGGAACGAAGCCGTGAAGGCCGCCTCCCGTTCCGTCACGCCCTCGGGCGC
ATCGACTGCCGCGCCGGCTTCCACGGCGGTCACTAAAAAAGAAGCAGAGG
CGCCCCCAGCCCCGTGGAGCCCGCGGGGGGACACCGACGGCCCGGACCCC
TCCCTGTGGGCCCTCACGAGCGGACAGGAAACCGCCGGCGTGGCGGAGAG
GCTGGAGTCGTGGGGCTGGGTGCGCGGAGAAAGGGTGGGAGGCAGCGGCG
ATGATGTCACTGCCAGTGTCGGCGCCGGTGTCGGCGAAGGGTTGGGGTCG
AGGTTCGGCTCGGGGTCGGCGGCGGAGCGACGGGAGTGGCCTCGGCGCGT
GCGGCTGCGGACGAGGCTCGGCAAGCGCTGCAGGAAGGACCTGGAGGCTG
GGCGGGCGGGAATTTTGATCAAGGCTACGTTCAATCCGCTGGAGGGGGAC
TCGAGCGGGGCCAAGGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12074:5413..7830-

>mRNA_M-pyrifera_M_contig12074.4270.1 ID=mRNA_M-pyrifera_M_contig12074.4270.1|Name=mRNA_M-pyrifera_M_contig12074.4270.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2328bp|location=Sequence derived from alignment at M-pyrifera_M_contig12074:5413..7830- (Macrocystis pyrifera P11B4 male)
ATGGAGGAGGTGCTCTATGGAGACTACAATGGCCACATGCGGCCGCTGAG
GCTGATGTACTTCTCGCTCGACAGCCGCTGCCTGGTGGCTGACCACCCCG
AAAGCGTCCAGGAGGAGGTGGAGTCTCACTTCTGTCCACACTGCAATGCG
CTGTGTACGACACCCGAGGCGCAGTCAAATGGCAACAGATGGAGGAGGTG
CTCTATGGAGACTACAATGGCCACATGCGGCCGCTGAGGCTGATGTACTT
CTCGCTCGACAGCCGCTGCCTGGTGGCTGACCACCCCGAAAGCGTCCAGG
AGGAGGTGGAGTCTCACTTCTGTCCACACTGCAATGCGCTGTGTACGACA
CCCGAGGCGCAGTCAAATGGCAACAGATGCCTCCAGTGCTTGGCATGCCC
CTGCTGCGGCTGCGTCTTGGCCCCCTCCCCAGTGAGCCTGGAGCCCTGCG
CACCCCAGCCACCCTCCTCCTCCTCCTCCTGCCCCTCCTCCTCTCCTGCC
GGCGGTGGTGGTAGCGCGCCCGAGTACTGTCTGCAGTGCCTCTACTGCCA
GTGGACCAGCGAGGCTTTGGGCCTGGTAGCCTCGGAGCCAGCCGCCCTGA
TAAAAGCGGTGGCGGCGGGAGAGAAATTACGGGACGGTGATTTGAAGGCC
GTCGATGCGCTCCTCGCAGGAATGAAGCGGATGGAAGATTCGCGAGTGAC
TGGAAGCGGTGGTGGGAGTGGGGGGACGGGGGGAAGGTCGCGTACTGGGA
GCGCCGTCAGCGGCGGTGGCGGTGGCGGCGGTGTAGGTGGTAGGAGGGCA
GGAGCGGAGAGCTGGTTGCCGGCGACTCCTGCGAATGCGACGGGCCCTTG
GAAGATGCCTCCAGTGCTTGGCATGCCCCTGCTGCGGCTGCGTCTTGGCC
CCCTCCCCAGTGAGCCTGGAGCCCTGCGCACCCCAGCCACCCTCCTCCTC
CTCCTCCTGCCCCTCCTCCTCTCCTGCCGGCGGTGGTGGTAGCGCGCCCG
AGTACTGTCTGCAGTGCCTCTACTGCCAGTGGACCAGCGAGGCTTTGGGC
CTGGTAGCCTCGGAGCCAGCCGCCCTGATAAAAGCGGTGGCGGCGGGAGA
GAAATTACGGGACGGTGATTTGAAGGCCGTCGATGCGCTCCTCGCAGGAA
TGAAGCGGATGGAAGATTCGCGAGTGACTGGAAGCGGTGGTGGGAGTGGG
GGGACGGGGGGAAGGTCGCGTACTGGGAGCGCCGTCAGCGGCGGTGGCGG
TGGCGGCGGTGTAGGTGGTAGGAGGGCAGGAGCGGAGAGCTGGTTGCCGG
CGACTCCTGCGAATGCGACGGGCCCTTGGAAGGTCGCAGACATCGAGGAA
GCGGTGTCGCTGAGGAACGAAGCCGTGAAGGCCGCCTCCCGTTCCGTCAC
GCCCTCGGGCGCATCGACTGCCGCGCCGGCTTCCACGGCGGTCACTAAAA
AAGAAGCAGAGGCGCCCCCAGCCCCGTGGAGCCCGCGGGGGGACACCGAC
GGCCCGGACCCCTCCCTGTGGGCCCTCACGAGCGGACAGGAAACCGCCGG
CGTGGCGGAGAGGCTGGAGTCGTGGGGCTGGGTGCGCGGAGAAAGGGTGG
GAGGCAGCGGCGATGATGTCACTGCCAGTGTCGGCGCCGGTGTCGGCGAA
GGGTTGGGGTCGAGGTTCGGCTCGGGGTCGGCGGCGGAGCGACGGGAGTG
GCCTCGGCGCGTGCGGCTGCGGACGAGGCTCGGCAAGCGCTGCAGGAAGG
ACCTGGAGGCTGGGCGGGCGGGAATTTTGATCAAGGCTACGTTCAATCCG
CTGGAGGGGGACTCGAGCGGGGCCAAGGCAGTCGCAGACATCGAGGAAGC
GGTGTCGCTGAGGAACGAAGCCGTGAAGGCCGCCTCCCGTTCCGTCACGC
CCTCGGGCGCATCGACTGCCGCGCCGGCTTCCACGGCGGTCACTAAAAAA
GAAGCAGAGGCGCCCCCAGCCCCGTGGAGCCCGCGGGGGGACACCGACGG
CCCGGACCCCTCCCTGTGGGCCCTCACGAGCGGACAGGAAACCGCCGGCG
TGGCGGAGAGGCTGGAGTCGTGGGGCTGGGTGCGCGGAGAAAGGGTGGGA
GGCAGCGGCGATGATGTCACTGCCAGTGTCGGCGCCGGTGTCGGCGAAGG
GTTGGGGTCGAGGTTCGGCTCGGGGTCGGCGGCGGAGCGACGGGAGTGGC
CTCGGCGCGTGCGGCTGCGGACGAGGCTCGGCAAGCGCTGCAGGAAGGAC
CTGGAGGCTGGGCGGGCGGGAATTTTGATCAAGGCTACGTTCAATCCGCT
GGAGGGGGACTCGAGCGGGGCCAAGGCA
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