mRNA_M-pyrifera_M_contig120733.4267.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120733.4267.1
Unique NamemRNA_M-pyrifera_M_contig120733.4267.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120733.4267.1 vs. uniprot
Match: A0A7S4MGY9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MGY9_9EUKA)

HSP 1 Score: 131 bits (330), Expect = 4.000e-35
Identity = 62/86 (72.09%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    1 MPFVAP--ARTLCTKCNKTVYPNESIRAANGTYHKGCLKCTVCNLTLNLKTCISHESKPYCRVHKPTVGHTQVASVTDQSAMKAPK 252
            MPFV        C KC KTVYPNE+IRAANGTYHKGCL+CT CN+TLNLKTC+SH+SKPYC  H P VGHTQVASV  +SAM APK
Sbjct:    1 MPFVPNDGKANKCAKCAKTVYPNEAIRAANGTYHKGCLRCTQCNITLNLKTCMSHQSKPYCNTHVPKVGHTQVASVEMKSAMSAPK 86          
BLAST of mRNA_M-pyrifera_M_contig120733.4267.1 vs. uniprot
Match: A0A6B2LTV0_9EUKA (LIM zinc-binding domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LTV0_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 2.050e-19
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   31 CTKCNKTVYPNESIRAANGTYHKGCLKCTVCNLTLNLKTCISHESKPYCRVHKPTVGHTQVAS-VTDQSAMKA 246
            C  C KTVYPNE+++A + ++HK CLKC VC +TL+L    S E KPYC+ H PTV HT VA  V  Q A  A
Sbjct:    5 CQGCGKTVYPNEAVKACDVSWHKACLKCEVCKMTLSLSNLTSFEKKPYCKTHVPTVKHTTVADDVLSQHAKAA 77          
BLAST of mRNA_M-pyrifera_M_contig120733.4267.1 vs. uniprot
Match: UPI00064502B4 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064502B4)

HSP 1 Score: 83.6 bits (205), Expect = 4.200e-18
Identity = 44/79 (55.70%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   19 ARTLCTKCNKTVYPNESIRAANGTYHKGCLKCTVCNLTLNLKTCISHESKPYCRVHKPTVGHTQVA-SVTDQSAMKAPK 252
            A   C  CNKT YP ESI A   TYHKGC KC+VCN+TLN+K     E K YC VH PT   T VA SV  ++A+ APK
Sbjct:    3 AAVKCGICNKTAYPLESIVALEKTYHKGCFKCSVCNITLNVKNFKGLEGKLYCAVHTPTQKATAVADSVAMKTALNAPK 81          
BLAST of mRNA_M-pyrifera_M_contig120733.4267.1 vs. uniprot
Match: A0A8J4UZG3_9MYCE (LIM zinc-binding domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UZG3_9MYCE)

HSP 1 Score: 83.2 bits (204), Expect = 7.670e-18
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   31 CTKCNKTVYPNESIRAANGTYHKGCLKCTVCNLTLNLKTCISHESKPYCRVHKPTVGHTQVA-SVTDQSAMKAPK 252
            C  CNKT YP ESI A + +YHK C KC+VCN+TLN+K     E K YC VH P    TQVA SV  ++A+ APK
Sbjct:    7 CASCNKTAYPLESIVALDSSYHKACFKCSVCNMTLNVKNFKGLEGKLYCAVHTPKATATQVADSVAIKNALNAPK 81          
BLAST of mRNA_M-pyrifera_M_contig120733.4267.1 vs. uniprot
Match: UPI001E1D3ECA (LIM zinc-binding domain-containing Nebulette-like isoform X1 n=13 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3ECA)

HSP 1 Score: 83.6 bits (205), Expect = 5.170e-17
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   28 LCTKCNKTVYPNESIRAANGTYHKGCLKCTVCNLTLNLKTCISHESKPYCRVHKPTVGHTQVASVTD 228
            LC +CNKTVYP E ++  + T+HKGC KC VCN+TLN+K    +E  PYC  H P   HT VA   +
Sbjct:    5 LCGRCNKTVYPTEELKCLDKTWHKGCFKCQVCNMTLNMKNYKGYEKLPYCNAHYPQTKHTAVADTPE 71          
BLAST of mRNA_M-pyrifera_M_contig120733.4267.1 vs. uniprot
Match: UPI000A2A9060 (LIM and SH3 domain protein F42H10.3 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9060)

HSP 1 Score: 80.1 bits (196), Expect = 1.010e-16
Identity = 34/67 (50.75%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   28 LCTKCNKTVYPNESIRAANGTYHKGCLKCTVCNLTLNLKTCISHESKPYCRVHKPTVGHTQVASVTD 228
            LC KC K VYP E     +  +HKGC KCTVCN+TLNLK    +   PYC+ H PT  HT+VA   +
Sbjct:    4 LCAKCAKIVYPVEKFNCLDKIWHKGCFKCTVCNMTLNLKNYKGYNRYPYCQAHYPTTRHTEVADTVE 70          
BLAST of mRNA_M-pyrifera_M_contig120733.4267.1 vs. uniprot
Match: A0A152A8Q0_9MYCE (LIM-type zinc finger-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A8Q0_9MYCE)

HSP 1 Score: 76.3 bits (186), Expect = 3.200e-15
Identity = 40/79 (50.63%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   19 ARTLCTKCNKTVYPNESIRAANGTYHKGCLKCTVCNLTLNLKTCISHESKPYCRVHKPTVGHTQVA-SVTDQSAMKAPK 252
            A   C  C KT YP ESI A + +YHKGC KC+VCN+TLN+K     E K YC VH P    T V  SV  ++A+ APK
Sbjct:    3 ASNKCAVCAKTAYPLESIVALDKSYHKGCFKCSVCNVTLNVKNFKGLEGKIYCAVHTPKQTATAVTDSVAIKNALNAPK 81          
BLAST of mRNA_M-pyrifera_M_contig120733.4267.1 vs. uniprot
Match: A0A6P8IDY0_ACTTE (LIM and SH3 domain protein Lasp-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IDY0_ACTTE)

HSP 1 Score: 75.9 bits (185), Expect = 7.720e-15
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   31 CTKCNKTVYPNESIRAANGTYHKGCLKCTVCNLTLNLKTCISHESKPYCRVHKPTVGHTQVASVTD 228
            C+KC+K VYP E +   +  +HK C KCTVCN+TLN+K    +   PYC  H PT  HT VA   +
Sbjct:    5 CSKCSKAVYPMEKLNCLDKFWHKTCFKCTVCNMTLNMKNYKGYNKMPYCAAHYPTTKHTTVADTPE 70          
BLAST of mRNA_M-pyrifera_M_contig120733.4267.1 vs. uniprot
Match: A0A0L0D2D8_THETB (Transcription factor lim1 n=2 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D2D8_THETB)

HSP 1 Score: 77.0 bits (188), Expect = 1.200e-14
Identity = 38/75 (50.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   31 CTKCNKTVYPNESIRAANGTYHKGCLKCTVCNLTLNLKTCISHESKPYCRVHKPTVGHTQVASVTD-QSAMKAPK 252
            C  C KT YP ES+RA + T+HK CLKC+ C ++LNLKT  S     YC+VH P    T VA   D Q A  APK
Sbjct:    6 CPVCTKTAYPMESVRALSKTFHKACLKCSTCGMSLNLKTIESEGGVLYCKVHLPKATATSVADSVDVQRATSAPK 80          
BLAST of mRNA_M-pyrifera_M_contig120733.4267.1 vs. uniprot
Match: UPI000719A7D0 (LIM and SH3 domain protein Lasp-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719A7D0)

HSP 1 Score: 76.3 bits (186), Expect = 1.250e-14
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   31 CTKCNKTVYPNESIRAANGTYHKGCLKCTVCNLTLNLKTCISHESKPYCRVHKPTVGHTQVASVTD 228
            C KC KTVYP E ++  + T+HK C KCTVCN+TLN+K    ++  PYC  H P+   T +A   +
Sbjct:    5 CDKCLKTVYPTEELKCLDKTWHKACFKCTVCNMTLNMKNYKGYDKHPYCNAHYPSTKFTPIADTPE 70          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120733.4267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MGY9_9EUKA4.000e-3572.09Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A6B2LTV0_9EUKA2.050e-1953.42LIM zinc-binding domain-containing protein n=1 Tax... [more]
UPI00064502B44.200e-1855.70hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J4UZG3_9MYCE7.670e-1854.67LIM zinc-binding domain-containing protein n=1 Tax... [more]
UPI001E1D3ECA5.170e-1750.75LIM zinc-binding domain-containing Nebulette-like ... [more]
UPI000A2A90601.010e-1650.75LIM and SH3 domain protein F42H10.3 n=1 Tax=Exaipt... [more]
A0A152A8Q0_9MYCE3.200e-1550.63LIM-type zinc finger-containing protein n=1 Tax=Ti... [more]
A0A6P8IDY0_ACTTE7.720e-1546.97LIM and SH3 domain protein Lasp-like n=1 Tax=Actin... [more]
A0A0L0D2D8_THETB1.200e-1450.67Transcription factor lim1 n=2 Tax=Thecamonas trahe... [more]
UPI000719A7D01.250e-1445.45LIM and SH3 domain protein Lasp-like n=1 Tax=Priap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120733contigM-pyrifera_M_contig120733:195..446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.9e-13
Seed eggNOG ortholog44689.DDB0214939
KEGG koko:K18267
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005856,GO:0005886,GO:0005938,GO:0015629,GO:0016020,GO:0030027,GO:0030175,GO:0030863,GO:0030864,GO:0031143,GO:0031252,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0071944,GO:0098858,GO:0099568,GO:0120025
EggNOG free text desc.Zinc-binding domain present in Lin-11, Isl-1, Mec-3.
EggNOG OGs3XIHP@554915,KOG1702@1,KOG1702@2759
COG Functional cat.Z
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons1
Model size252
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.827616-CDS-M-pyrifera_M_contig120733:194..4461622815726.827616-CDS-M-pyrifera_M_contig120733:194..446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120733 195..446 +
1692277540.779447-CDS-M-pyrifera_M_contig120733:194..4461692277540.779447-CDS-M-pyrifera_M_contig120733:194..446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120733 195..446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120733.4267.1prot_M-pyrifera_M_contig120733.4267.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120733 195..446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120733.4267.1

>prot_M-pyrifera_M_contig120733.4267.1 ID=prot_M-pyrifera_M_contig120733.4267.1|Name=mRNA_M-pyrifera_M_contig120733.4267.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
MPFVAPARTLCTKCNKTVYPNESIRAANGTYHKGCLKCTVCNLTLNLKTC
ISHESKPYCRVHKPTVGHTQVASVTDQSAMKAPK
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mRNA from alignment at M-pyrifera_M_contig120733:195..446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120733.4267.1 ID=mRNA_M-pyrifera_M_contig120733.4267.1|Name=mRNA_M-pyrifera_M_contig120733.4267.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig120733:195..446+ (Macrocystis pyrifera P11B4 male)
ATGCCGTTCGTTGCTCCCGCCAGGACGCTCTGCACGAAGTGCAACAAGAC TGTGTACCCCAACGAGTCCATCCGGGCTGCCAACGGCACGTACCACAAGG GCTGCCTCAAGTGCACCGTTTGCAACCTGACTCTCAACCTCAAGACATGC ATCTCCCACGAGAGCAAGCCCTACTGCCGCGTGCACAAGCCCACTGTCGG ACACACGCAGGTTGCTAGCGTCACCGACCAGTCGGCCATGAAGGCCCCCA AG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120733:195..446+

>mRNA_M-pyrifera_M_contig120733.4267.1 ID=mRNA_M-pyrifera_M_contig120733.4267.1|Name=mRNA_M-pyrifera_M_contig120733.4267.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig120733:195..446+ (Macrocystis pyrifera P11B4 male)
ATGCCGTTCGTTGCTCCCGCCAGGACGCTCTGCACGAAGTGCAACAAGAC
TGTGTACCCCAACGAGTCCATCCGGGCTGCCAACGGCACGTACCACAAGG
GCTGCCTCAAGTGCACCGTTTGCAACCTGACTCTCAACCTCAAGACATGC
ATCTCCCACGAGAGCAAGCCCTACTGCCGCGTGCACAAGCCCACTGTCGG
ACACACGCAGGTTGCTAGCGTCACCGACCAGTCGGCCATGAAGGCCCCCA
AGATGCCGTTCGTTGCTCCCGCCAGGACGCTCTGCACGAAGTGCAACAAG
ACTGTGTACCCCAACGAGTCCATCCGGGCTGCCAACGGCACGTACCACAA
GGGCTGCCTCAAGTGCACCGTTTGCAACCTGACTCTCAACCTCAAGACAT
GCATCTCCCACGAGAGCAAGCCCTACTGCCGCGTGCACAAGCCCACTGTC
GGACACACGCAGGTTGCTAGCGTCACCGACCAGTCGGCCATGAAGGCCCC
CAAG
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