mRNA_M-pyrifera_M_contig101934.422.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig101934.422.1 vs. uniprot
Match: A0A7K1BCB8_9ACTN (ABC transporter permease n=2 Tax=root TaxID=1 RepID=A0A7K1BCB8_9ACTN) HSP 1 Score: 314 bits (804), Expect = 1.780e-104 Identity = 161/218 (73.85%), Postives = 185/218 (84.86%), Query Frame = 1 Query: 1 AVTAMLAAALWAGIAAAFREWTGTNEAISTLLLNYIAALVLAWLVFGRWKDPSAAGFPRTRILDDSESLPLLWGRVHIGIVVAIVAAIGVWAALRYTVWGFRLGVLGGNAEAARRAGLRTSRLSASALMVGGALAGLGGMLQVSGVEQQLRPGMMSGYGFTGVLAAWMVKHHPLKALLSAGLLAAIAVGGNGLKIRAGLSGASVNILMALMLLAMLGW 654 A+ AM+ A WA IAAA R+WTGTNE ISTLLLNY+A L+L WLVFGRWKDP++ GFPRTR L + E LP+LWGRVHIG+VVA+VAA+ VW L T WGFRLGVLGGNAEAARRAG RT L+ SALM GGALAGLGGMLQ SGVE QLRPG+M GYGFTG+LAAWMV+ HP++A++S+ LAAIA+GGNGLKIR GLS ASVNILMAL+LLA+LGW Sbjct: 117 ALAAMVGGAAWAAIAAALRQWTGTNEIISTLLLNYLATLLLGWLVFGRWKDPTSTGFPRTRSLTEEERLPILWGRVHIGVVVALVAAVIVWLVLTRTSWGFRLGVLGGNAEAARRAGFRTGTLATSALMAGGALAGLGGMLQSSGVEGQLRPGIMVGYGFTGILAAWMVRQHPIRAIVSSFALAAIAIGGNGLKIREGLSAASVNILMALLLLAVLGW 334
BLAST of mRNA_M-pyrifera_M_contig101934.422.1 vs. uniprot
Match: E3JB85_FRAIE (Inner-membrane translocator n=3 Tax=Frankia TaxID=1854 RepID=E3JB85_FRAIE) HSP 1 Score: 218 bits (556), Expect = 1.500e-66 Identity = 121/219 (55.25%), Postives = 156/219 (71.23%), Query Frame = 1 Query: 1 AVTAMLAAALWAGIAAAFREWTGTNEAISTLLLNYIAALVLAWLVFGRWKDPSAAGFPRTRILDDSESLPLLWGR-VHIGIVVAIVAAIGVWAALRYTVWGFRLGVLGGNAEAARRAGLRTSRLSASALMVGGALAGLGGMLQVSGVEQQLRPGMMSGYGFTGVLAAWMVKHHPLKALLSAGLLAAIAVGGNGLKIRAGLSGASVNILMALMLLAMLGW 654 AV AMLA A WAG+AA R G NEA+STLLLNYIA VL +L++ WKDP G P T L D+ LP L VHIGIV A++A VWA LRYT WGFRL V+GGN EAARRAGL + L SA++VGGALAGLGGM+ +GVE +LR G+ + +G+ LA+W+ +H+P+ +++A LAAI V G+ L++ +GL A+VNILM L+L+A+LGW Sbjct: 150 AVAAMLAGAAWAGLAAVLRLTVGINEAVSTLLLNYIALDVLLYLIYSPWKDPHGTGQPTTAELADTAKLPYLGTTSVHIGIVFALIATAVVWALLRYTTWGFRLRVIGGNPEAARRAGLPVAMLLLSAMLVGGALAGLGGMVHYAGVEYKLRTGITTNFGYIAFLASWLARHNPVSVVVAAVALAAITVAGDSLQLDSGLPAATVNILMGLVLIAVLGW 368
BLAST of mRNA_M-pyrifera_M_contig101934.422.1 vs. uniprot
Match: UPI002010539D (ABC transporter permease n=1 Tax=Sphaerisporangium sp. NEAU-ZS1 TaxID=2935860 RepID=UPI002010539D) HSP 1 Score: 214 bits (545), Expect = 3.890e-65 Identity = 121/226 (53.54%), Postives = 165/226 (73.01%), Query Frame = 1 Query: 1 AVTAMLAA-----ALWAGIAAAFREWTGTNEAISTLLLNYIAALVLAWLVFGRWKDPSAAGFPRTRILDDSESLPLLWGR-VHIGIVVAIVAAIGVWAALRYTVWGFRLGVLGGNAEAARRAGLRTSRLSASALMVGGALAGLGGMLQVSGVEQQLRPGMMSGYGFTGVLAAWMVKHHPLKALLSAGLLAAIAVGGNGLKIRAGLSGASVNILMALMLLAMLGWAT 660 A+ AML A ALWAGIAAA R G NEA++TLLLNY+A V+ +L++ WKDP+ +G P TR L + LPL+ VH+G+V+A+VAA+ VW LR T +GFRLGV GGN EAARRAGL RL +A+++GGALAGL G++Q++GVE +LRPG+ + G+ LAAW+ +H PL A+ A LLA I++GG+ L++ +GL A+VN+LM L+LLA+LGWA+ Sbjct: 122 ALVAMLVAGAAGGALWAGIAAAMRLTVGVNEAVTTLLLNYVALDVMLYLIYEPWKDPNGSGQPATRPLAVAARLPLIGTTAVHMGLVIALVAAVLVWLVLRGTAFGFRLGVTGGNPEAARRAGLPVKRLLLTAMLLGGALAGLAGVMQLAGVEFKLRPGLTANIGYIAFLAAWLARHKPLPAVGGAVLLAVISIGGDSLQLDSGLPAATVNVLMGLVLLAVLGWAS 347
BLAST of mRNA_M-pyrifera_M_contig101934.422.1 vs. uniprot
Match: UPI001E4FE0D0 (ABC transporter permease n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E4FE0D0) HSP 1 Score: 213 bits (543), Expect = 1.340e-64 Identity = 119/209 (56.94%), Postives = 150/209 (71.77%), Query Frame = 1 Query: 31 WAGIAAAFREWTGTNEAISTLLLNYIAALVLAWLVFGRWKDPSAAGFPRTRILDDSESLPLLWG-RVHIGIVVAIVAAIGVWAALRYTVWGFRLGVLGGNAEAARRAGLRTSRLSASALMVGGALAGLGGMLQVSGVEQQLRPGMMSGYGFTGVLAAWMVKHHPLKALLSAGLLAAIAVGGNGLKIRAGLSGASVNILMALMLLAMLGW 654 WA I A R W T+EAI +LLLNY+A +VLAWLVF W+DP + G + L + LPLLWG RV+IGI+VA+VA VW A R T WGFRL V+GGN EAARRAG+ L SA GG LAG+GGM+ V+GVE +LRP ++ G+G+ LA+W+ +H P K ++A L+AIAVGG GLKI AGLSG +VN+LMAL+LLA+LGW Sbjct: 163 WALIPALLRIWFETSEAIVSLLLNYVAYIVLAWLVFEPWRDPVSTGQAYSTELVGPQRLPLLWGNRVNIGILVALVAVPVVWWAFRSTRWGFRLRVVGGNPEAARRAGMNVKGLVVSAFATGGVLAGIGGMVAVAGVEGRLRPDLLVGFGYIAFLASWLGRHQPWKVAIAAVALSAIAVGGTGLKIAAGLSGGAVNVLMALILLAVLGW 371
BLAST of mRNA_M-pyrifera_M_contig101934.422.1 vs. uniprot
Match: UPI001B0A9D5E (ABC transporter permease n=1 Tax=Streptosporangiaceae bacterium NEAU-GS5 TaxID=2820291 RepID=UPI001B0A9D5E) HSP 1 Score: 212 bits (540), Expect = 1.710e-64 Identity = 115/218 (52.75%), Postives = 158/218 (72.48%), Query Frame = 1 Query: 4 VTAMLAAALWAGIAAAFREWTGTNEAISTLLLNYIAALVLAWLVFGRWKDPSAAGFPRTRILDDSESLPLLWGR-VHIGIVVAIVAAIGVWAALRYTVWGFRLGVLGGNAEAARRAGLRTSRLSASALMVGGALAGLGGMLQVSGVEQQLRPGMMSGYGFTGVLAAWMVKHHPLKALLSAGLLAAIAVGGNGLKIRAGLSGASVNILMALMLLAMLGW 654 V L A+WAG+A A R G NEA++TLLLNY+A V+ +L++ WKD +G P T L + LPLL G VH GI++A++AA+ VW LR+T +GFRL V GGN EAARRAGL +RL +A+++GGALAGL G++Q++GVE +LRPG+ + G+ LAAW+ +H+PL A +A LLAAI VGG+ L++ +GL A+VN+LMAL+LLA+LGW Sbjct: 125 VAGALGGAVWAGLAVALRVTVGVNEAVTTLLLNYVALDVMLYLIYEPWKDAHGSGQPATPPLSVEQRLPLLSGTAVHAGIILALLAAVAVWLTLRHTAFGFRLAVTGGNPEAARRAGLPVARLLMTAMLLGGALAGLAGVIQLAGVEFKLRPGLTTNIGYIAFLAAWLARHNPLPATAAAFLLAAITVGGDSLQLDSGLPAATVNVLMALILLAVLGW 342
BLAST of mRNA_M-pyrifera_M_contig101934.422.1 vs. uniprot
Match: A0A6V8LK27_9ACTN (ABC transporter permease n=2 Tax=Phytohabitans rumicis TaxID=1076125 RepID=A0A6V8LK27_9ACTN) HSP 1 Score: 212 bits (540), Expect = 2.320e-64 Identity = 122/219 (55.71%), Postives = 157/219 (71.69%), Query Frame = 1 Query: 1 AVTAMLAAALWAGIAAAFREWTGTNEAISTLLLNYIAALVLAWLVFGRWKDPSAAGFPRTRILDDSESLPLLW--GRVHIGIVVAIVAAIGVWAALRYTVWGFRLGVLGGNAEAARRAGLRTSRLSASALMVGGALAGLGGMLQVSGVEQQLRPGMMSGYGFTGVLAAWMVKHHPLKALLSAGLLAAIAVGGNGLKIRAGLSGASVNILMALMLLAMLG 651 A+ AM A A WAG+AA R NEAISTLLLN+IA ++ L++ WKD S G P +R L D+ LPL G V+ GIV+A++A GVW ALRYT WGFRL V+GGN EAARRAGLR L SA++VGGALAGL G++ +G E +LRPGM +G+G+ G LA+W+ H PL+ L+A LLAAIA+GG+ L+I +GL AS+N+LMA++LL MLG Sbjct: 139 ALAAMAAGAAWAGLAAGLRLTVKVNEAISTLLLNFIAIDIMLGLIYDPWKDASGFGQPSSRPLADTARLPLFTTGGTVNAGIVLALLALGGVWWALRYTEWGFRLRVVGGNPEAARRAGLRVGPLLLSAMLVGGALAGLAGLVHFAGTEFKLRPGMTTGFGYVGFLASWLAMHRPLRVGLAALLLAAIAMGGDSLQIDSGLPAASLNVLMAVVLLVMLG 357
BLAST of mRNA_M-pyrifera_M_contig101934.422.1 vs. uniprot
Match: UPI0003F7E136 (ABC transporter permease n=1 Tax=Cellulomonas sp. URHD0024 TaxID=1302620 RepID=UPI0003F7E136) HSP 1 Score: 211 bits (538), Expect = 1.250e-63 Identity = 115/219 (52.51%), Postives = 156/219 (71.23%), Query Frame = 1 Query: 10 AMLAAALWAGIAAAFREWTGTNEAISTLLLNYIAALVLAWLVFGRWKDPSAAGFPRTRILDDSESLPLLWG-RVHIGIVVAIVAAIGVWAALRYTVWGFRLGVLGGNAEAARRAGLRTSRLSASALMVGGALAGLGGMLQVSGVEQQLRPGMMSGYGFTGVLAAWMVKHHPLKALLSAGLLAAIAVGGNGLKIRAGLSGASVNILMALMLLAMLGWATP 663 AM+A ALWAGIAAA R NEA++T+LLNY+A + +L+ G WKDP A G + L+D+ LP++ G ++HIG+++A+VAA VW AL T WGFRL V+GGN EAARRAG+ L +AL++GGALAGL G +Q +G+E +LRP G+ LA+W+ +H PL LL++ +LAAIAV GN L+I +GL ASVNILM L+L+A+LGW +P Sbjct: 174 AMVAGALWAGIAAAMRLVVKVNEAVTTMLLNYVALYTMLFLILGPWKDPKALGQSTSVELNDAAKLPVIAGTQIHIGVIIAVVAAFAVWFALTRTTWGFRLSVVGGNGEAARRAGMPVVTLILTALLLGGALAGLAGFVQFAGMEYKLRPTFGLTIGYVAFLASWLSRHKPLPLLLASVVLAAIAVSGNSLQINSGLPAASVNILMGLLLVAVLGWTSP 392
BLAST of mRNA_M-pyrifera_M_contig101934.422.1 vs. uniprot
Match: UPI001AEC5F33 (ABC transporter permease n=1 Tax=Microbispora oryzae TaxID=2806554 RepID=UPI001AEC5F33) HSP 1 Score: 208 bits (529), Expect = 7.080e-63 Identity = 114/212 (53.77%), Postives = 156/212 (73.58%), Query Frame = 1 Query: 25 ALWAGIAAAFREWTGTNEAISTLLLNYIAALVLAWLVFGRWKDPSAAGFPRTRILDDSESLPLLWGR-VHIGIVVAIVAAIGVWAALRYTVWGFRLGVLGGNAEAARRAGLRTSRLSASALMVGGALAGLGGMLQVSGVEQQLRPGMMSGYGFTGVLAAWMVKHHPLKALLSAGLLAAIAVGGNGLKIRAGLSGASVNILMALMLLAMLGWA 657 ALWAG+AAA R G NEA++TLLLNY+A V+ +L++ WKDP +G P +R LD + LPLL G +H+GIVVA+VAA+ VW LR T +GFR+ V+GGN EAARRAGL +RL A+++GGALAGL G + ++GVE +LRPG+ + G+ LAAW+ +H PL + +A LLAA+ V G+ L++ +GL A+VNILM L+LLA+LGW+ Sbjct: 130 ALWAGVAAALRLVVGVNEAVTTLLLNYVALDVMLYLIYEPWKDPHGSGQPASRPLDLAARLPLLSGTAIHMGIVVALVAAVAVWLVLRGTSFGFRVSVVGGNPEAARRAGLPVARLILLAMLLGGALAGLAGAVHLAGVEFKLRPGLTTNIGYIAFLAAWLARHRPLPTVGAALLLAAVTVAGDSLQLDSGLPAATVNILMGLVLLAVLGWS 341
BLAST of mRNA_M-pyrifera_M_contig101934.422.1 vs. uniprot
Match: UPI0019436510 (ABC transporter permease n=1 Tax=Cellulomonas phragmiteti TaxID=478780 RepID=UPI0019436510) HSP 1 Score: 208 bits (530), Expect = 1.080e-62 Identity = 119/220 (54.09%), Postives = 154/220 (70.00%), Query Frame = 1 Query: 4 VTAMLAAALWAGIAAAFREWTGTNEAISTLLLNYIAALVLAWLVFGRWKDPSAAGFPRTRILDDSESLPLLWGR-VHIGIVVAIVAAIGVWAALRYTVWGFRLGVLGGNAEAARRAGLRTSRLSASALMVGGALAGLGGMLQVSGVEQQLRPGMMSGYGFTGVLAAWMVKHHPLKALLSAGLLAAIAVGGNGLKIRAGLSGASVNILMALMLLAMLGWAT 660 V A LA A WAGIAAA R NEA++TLLLNY+A + +L+ G WKDP+A G + L DS LP+ G +H+G+V+A+VAA VW AL T WGFRL V+GGNAEAARRAGL RL +AL++GGALAGL G LQ++G+E +LRP G+ LA+W+ +H PL LL++ +LAAIAV GN L+I +GL ASVNILM L+L+ +LGW + Sbjct: 149 VAAALAGAAWAGIAAALRLVVQVNEAVTTLLLNYVALYSMLFLILGPWKDPAALGQSTSVELVDSVKLPVFSGTSIHVGVVLAVVAAAAVWFALTRTSWGFRLTVVGGNAEAARRAGLPVVRLLLTALLIGGALAGLAGFLQLAGMEYKLRPTFGLTIGYVAFLASWLARHKPLPLLLTSFVLAAIAVSGNSLQIGSGLPAASVNILMGLLLVTVLGWTS 368
BLAST of mRNA_M-pyrifera_M_contig101934.422.1 vs. uniprot
Match: A0A365HAN0_9ACTN (ABC transporter permease n=1 Tax=Actinomadura craniellae TaxID=2231787 RepID=A0A365HAN0_9ACTN) HSP 1 Score: 207 bits (528), Expect = 1.430e-62 Identity = 113/214 (52.80%), Postives = 156/214 (72.90%), Query Frame = 1 Query: 16 LAAALWAGIAAAFREWTGTNEAISTLLLNYIAALVLAWLVFGRWKDPSAAGFPRTRILDDSESLPLLWGR-VHIGIVVAIVAAIGVWAALRYTVWGFRLGVLGGNAEAARRAGLRTSRLSASALMVGGALAGLGGMLQVSGVEQQLRPGMMSGYGFTGVLAAWMVKHHPLKALLSAGLLAAIAVGGNGLKIRAGLSGASVNILMALMLLAMLGW 654 LA A WAG+AAA R G NEA++TLLLNYIA VL +L++ WKDP+ +G P TR L+ + LPLL G VH+G++VA++AA G W ALR T +GFRLGV+GGN EAA RAGL RL +A++VGGALAGL G + ++GVE +LRPG+ + G+ LA+W+V+H PL + +A LLA + + G+ L++ +GL A+V++L L+LLA+LGW Sbjct: 138 LAGAAWAGLAAALRLTAGVNEAVTTLLLNYIALDVLLYLIYEPWKDPAGSGQPATRPLEVAARLPLLAGTAVHVGVIVALLAAAGTWFALRRTAFGFRLGVVGGNPEAAGRAGLPVRRLLLTAMLVGGALAGLAGAVHLAGVEFKLRPGLTTNIGYLAFLASWLVRHRPLPVIGAALLLAGVTIAGDSLQLDSGLPAATVHVLTGLVLLAVLGW 351 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101934.422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig101934.422.1 >prot_M-pyrifera_M_contig101934.422.1 ID=prot_M-pyrifera_M_contig101934.422.1|Name=mRNA_M-pyrifera_M_contig101934.422.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=217bp MLAAALWAGIAAAFREWTGTNEAISTLLLNYIAALVLAWLVFGRWKDPSAback to top mRNA from alignment at M-pyrifera_M_contig101934:3..665- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig101934.422.1 ID=mRNA_M-pyrifera_M_contig101934.422.1|Name=mRNA_M-pyrifera_M_contig101934.422.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=663bp|location=Sequence derived from alignment at M-pyrifera_M_contig101934:3..665- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig101934:3..665- >mRNA_M-pyrifera_M_contig101934.422.1 ID=mRNA_M-pyrifera_M_contig101934.422.1|Name=mRNA_M-pyrifera_M_contig101934.422.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1302bp|location=Sequence derived from alignment at M-pyrifera_M_contig101934:3..665- (Macrocystis pyrifera P11B4 male)back to top |