mRNA_M-pyrifera_M_contig120225.4175.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120225.4175.1
Unique NamemRNA_M-pyrifera_M_contig120225.4175.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120225.4175.1 vs. uniprot
Match: A0A2E7CXQ6_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7CXQ6_9PLAN)

HSP 1 Score: 121 bits (304), Expect = 3.600e-33
Identity = 59/120 (49.17%), Postives = 87/120 (72.50%), Query Frame = 1
Query:    1 ERAMLLFAQLAAVAALKQQPIGRDRFLVLTGISATRAGWPDVAARCYELVTANSPQHILGHYSSFADALRDAEFQAFVKQVEKFCTPERGEHLLSEMKMQ-LPTIGEMQTAGDLCRRLLE 357
            ER ML+F +LA ++  KQQ IGRD+FL+L  + A RAGW +V+ +C +LVT ++P H+L  Y + ADALR  +FQ+F +Q+E+FC+ ERGEHLL+E+ ++ LP  G +  AG+ C  LL+
Sbjct:    5 ERGMLIFTRLAVISHEKQQAIGRDKFLILAAVEACRAGWLEVSEKCRQLVTESNPLHLLNRYETVADALRSEDFQSFARQLERFCSLERGEHLLTELGIEPLPPDGSL--AGNFCEDLLD 122          
BLAST of mRNA_M-pyrifera_M_contig120225.4175.1 vs. uniprot
Match: A0A836REN1_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836REN1_9PLAN)

HSP 1 Score: 111 bits (277), Expect = 5.500e-29
Identity = 55/120 (45.83%), Postives = 84/120 (70.00%), Query Frame = 1
Query:    1 ERAMLLFAQLAAVAALKQQPIGRDRFLVLTGISATRAGWPDVAARCYELVTANSPQHILGHYSSFADALRDAEFQAFVKQVEKFCTPERGEHLLSEMKMQLPTIGEMQTA-GDLCRRLLE 357
            E  ML++A+LA +AA ++Q +GRDRFL+L G++A RAGWP VA RC  +V  ++PQH++G Y S +DA+RD   Q F K++E+FC  ER E+LLSE+ + +  + + Q + G    R+L+
Sbjct:    5 ETEMLVYAKLAELAARRRQRLGRDRFLLLAGLAACRAGWPSVADRCRRMVLDHNPQHLVGRYDSMSDAVRDVRAQTFFKRLERFCPFERAEYLLSELGIAVAGLQQGQESPGQSADRMLD 124          
BLAST of mRNA_M-pyrifera_M_contig120225.4175.1 vs. uniprot
Match: UPI001421EAF6 (hypothetical protein n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI001421EAF6)

HSP 1 Score: 108 bits (270), Expect = 6.330e-28
Identity = 54/127 (42.52%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    1 ERAMLLFAQLAAVAALKQQPIGRDRFLVLTGISATRAGWPDVAARCYELVTANSPQHILGHYSSFADALRDAEFQAFVKQVEKFCTPERGEHLLSEMKMQLPTIGEMQTAGDLCRRLLEPMSADSDV 381
            ER ++++A+LAA +  K+Q  GRDRFL+L G++ATRAGWP +A     LV  N+P+H++G + +F DALR  +F  F+KQ+++ C PE+ +HLL  ++   PTI       DL   +L  M + +DV
Sbjct:    5 ERNLVIYARLAAASQAKRQLAGRDRFLILAGVAATRAGWPAIAEEARRLVQQNNPRHLIGQWDTFGDALRSEDFPVFLKQLQRICGPEQADHLLHSLRSD-PTIPPEPQTDDLGTAILA-MWSTADV 129          
BLAST of mRNA_M-pyrifera_M_contig120225.4175.1 vs. uniprot
Match: UPI00029AF085 (hypothetical protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI00029AF085)

HSP 1 Score: 101 bits (252), Expect = 2.610e-25
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 ERAMLLFAQLAAVAALKQQPIGRDRFLVLTGISATRAGWPDVAARCYELVTANSPQHILGHYSSFADALRDAEFQAFVKQVEKFCTPERGEHLLSEMKMQLPTIGEMQTAGDLCRRL 351
            E  M ++ QLAA++  KQQP+ RDRFL+L G+ A RAGWPDVAA C+  +  ++P H    + +FADALRD  FQ  V   E++C  E+ E +L E+   LP   E+     +  RL
Sbjct:    5 EMGMQVYVQLAAISDQKQQPLVRDRFLLLAGVEACRAGWPDVAACCHRKLIESNPAHQAKRFMTFADALRDEPFQQLVAHWERYCPFEKAEAMLRELNFPLPPPTELSLGEQMIARL 121          
BLAST of mRNA_M-pyrifera_M_contig120225.4175.1 vs. uniprot
Match: A0A517ZRG3_9PLAN (Uncharacterized protein n=2 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZRG3_9PLAN)

HSP 1 Score: 101 bits (252), Expect = 3.170e-25
Identity = 52/96 (54.17%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 ERAMLLFAQLAAVAALKQQPIGRDRFLVLTGISATRAGWPDVAARCYELVTANSPQHILGHYSSFADALRDAEFQAFVKQVEKFCTPERGEHLLSE 288
            E AM  FA+LA V+  KQQ   RD+FL+LTGISA RA   D+AARC E+V AN+PQH++  Y+S  DALR  +F+ F  Q+++FCT E+ E+LL E
Sbjct:    4 EAAMTAFARLAEVSQQKQQYPQRDKFLLLTGISACRAACVDIAARCREIVLANNPQHLIRKYASLPDALRSEDFEVFHAQLDRFCTFEKAEYLLHE 99          
BLAST of mRNA_M-pyrifera_M_contig120225.4175.1 vs. uniprot
Match: A0A257VTE5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257VTE5_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 1.450e-20
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    1 ERAMLLFAQLAAVAALKQQPIGRDRFLVLTGISATRAGWPDVAARCYELVTANSPQHILGHYSSFADALRDAEFQAFVKQVEKFCTPERGEHLL 282
            E AM  +AQLA ++  K+Q   RDRFL+L G+ A RAGW DVA RC E+   + P H L  ++S  DALRD +F   V+  E++C+ ER EHLL
Sbjct:    5 ETAMCAYAQLAVLSHEKRQTPARDRFLLLCGVEACRAGWLDVAVRCREIHNRSQPAHQLAKHASLPDALRDPDFGRVVEHWERWCSYERAEHLL 98          
BLAST of mRNA_M-pyrifera_M_contig120225.4175.1 vs. uniprot
Match: A0A3L7SIJ4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7SIJ4_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 1.950e-20
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 ERAMLLFAQLAAVAALKQQPIGRDRFLVLTGISATRAGWPDVAARCYELVTANSPQHILGHYSSFADALRDAEFQAFVKQVEKFCTPERGEHLLSEMKMQLPTIGEMQT 327
            E AM ++ QLA ++  + Q    DRFL+L G+ A RAGWP+VAARC+  + A +P H+   Y++ AD LR+ +FQ  V + E++C  E+GE +L ++ +      E  T
Sbjct:    5 EAAMTVYVQLAVISEQRHQSQVCDRFLLLAGVEACRAGWPEVAARCHARLIAANPAHLAARYTTIADGLRNEDFQKLVARWERYCPFEKGEAMLRQLDLPAVEPSEAST 113          
BLAST of mRNA_M-pyrifera_M_contig120225.4175.1 vs. uniprot
Match: UPI0019BD5DCB (Uncharacterized protein n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI0019BD5DCB)

HSP 1 Score: 86.3 bits (212), Expect = 1.220e-19
Identity = 42/85 (49.41%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 ERAMLLFAQLAAVAALKQQPIGRDRFLVLTGISATRAGWPDVAARCYELVTANSPQHILGHYSSFADALRDAEFQAFVKQVEKFC 255
            E AM  + QLA ++  KQQ + RDRFL+L G  A RAGW +VA RC E + A++P H L H+++ ADALR+A+FQ  V + E++C
Sbjct:    5 EIAMCAYVQLAVLSDEKQQTLVRDRFLLLAGAEACRAGWLEVAERCREKLVASNPAHQLNHHATMADALRNADFQRLVAKWERYC 89          
BLAST of mRNA_M-pyrifera_M_contig120225.4175.1 vs. uniprot
Match: A0A7C2PIT7_9PLAN (Uncharacterized protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2PIT7_9PLAN)

HSP 1 Score: 87.4 bits (215), Expect = 1.230e-19
Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = 1
Query:    1 ERAMLLFAQLAAVAALKQQPIGRDRFLVLTGISATRAGWPDVAARCYELVTANSPQHILGHYSSFADALRDAEFQAFVKQVEKFCTPERGEHLLSEMKMQLPTIGEMQTAGDLCRRLLEPMSA 369
            E AM  +AQLA ++  K+Q   RDRFL+LTG+ A RAGWP+VAA C+  +  N     +  + SF +ALRD EF       E++C  ER EHLL  +     +    ++AG    +LL+ +++
Sbjct:    5 ETAMCAYAQLAVLSHEKRQSPARDRFLLLTGVEACRAGWPEVAAACHGTLVQNRSPMQVTKFPSFEEALRDEEFSRIAAHWERWCPFERAEHLLQRLGNSPRSEAAGESAGAWVLQLLQALAS 127          
BLAST of mRNA_M-pyrifera_M_contig120225.4175.1 vs. uniprot
Match: A0A353Z5K2_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A353Z5K2_9PLAN)

HSP 1 Score: 82.0 bits (201), Expect = 1.840e-17
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 ERAMLLFAQLAAVAALKQQPIGRDRFLVLTGISATRAGWPDVAARCYELVTANSPQHILGHYSSFADALRDAEFQAFVKQVEKFCTPERGEHLL 282
            E  +L++AQLAA A  + Q   RDRFLV  G++A ++G P +A RC EL+  ++P H+L  Y SF  A   A+FQAFV+Q+++    ER EHLL
Sbjct:    5 ETRLLVYAQLAATAQSRGQLAPRDRFLVQAGMAALQSGSPPLAERCRELILQHNPHHLLHRYVSFQVAAAAADFQAFVRQLDRNHPYERAEHLL 98          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120225.4175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A2E7CXQ6_9PLAN3.600e-3349.17Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A836REN1_9PLAN5.500e-2945.83Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI001421EAF66.330e-2842.52hypothetical protein n=1 Tax=Rubinisphaera sp. JC6... [more]
UPI00029AF0852.610e-2543.59hypothetical protein n=1 Tax=Schlesneria paludicol... [more]
A0A517ZRG3_9PLAN3.170e-2554.17Uncharacterized protein n=2 Tax=Symmachiella TaxID... [more]
A0A257VTE5_9BACT1.450e-2048.94Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A3L7SIJ4_9BACT1.950e-2039.45Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
UPI0019BD5DCB1.220e-1949.41Uncharacterized protein n=1 Tax=Candidatus Sacchar... [more]
A0A7C2PIT7_9PLAN1.230e-1939.02Uncharacterized protein n=1 Tax=Schlesneria paludi... [more]
A0A353Z5K2_9PLAN1.840e-1746.81Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120225contigM-pyrifera_M_contig120225:138..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score102.4
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog1123242.JH636434_gene3564
Hectar predicted targeting categoryother localisation
EggNOG OGs28QMM@1,2J4BX@203682,2ZD3A@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size375
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.9713233-UTR-M-pyrifera_M_contig120225:137..1461622815721.9713233-UTR-M-pyrifera_M_contig120225:137..146Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120225 138..146 +
1692277538.1818457-UTR-M-pyrifera_M_contig120225:137..1461692277538.1818457-UTR-M-pyrifera_M_contig120225:137..146Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120225 138..146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.9838145-CDS-M-pyrifera_M_contig120225:146..5211622815721.9838145-CDS-M-pyrifera_M_contig120225:146..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120225 147..521 +
1692277538.191198-CDS-M-pyrifera_M_contig120225:146..5211692277538.191198-CDS-M-pyrifera_M_contig120225:146..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120225 147..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120225.4175.1prot_M-pyrifera_M_contig120225.4175.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120225 147..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120225.4175.1

>prot_M-pyrifera_M_contig120225.4175.1 ID=prot_M-pyrifera_M_contig120225.4175.1|Name=mRNA_M-pyrifera_M_contig120225.4175.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
MLLFAQLAAVAALKQQPIGRDRFLVLTGISATRAGWPDVAARCYELVTAN
SPQHILGHYSSFADALRDAEFQAFVKQVEKFCTPERGEHLLSEMKMQLPT
IGEMQTAGDLCRRLLEPMSADSDV*
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mRNA from alignment at M-pyrifera_M_contig120225:138..521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120225.4175.1 ID=mRNA_M-pyrifera_M_contig120225.4175.1|Name=mRNA_M-pyrifera_M_contig120225.4175.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig120225:138..521+ (Macrocystis pyrifera P11B4 male)
GAAAGGGCGATGCTACTGTTTGCTCAGCTGGCTGCAGTGGCGGCTCTCAA GCAACAGCCGATCGGACGGGATCGTTTCCTCGTGCTGACCGGGATCTCGG CCACGCGTGCTGGTTGGCCGGATGTTGCTGCCCGCTGTTATGAATTGGTC ACGGCCAACTCTCCTCAGCACATTCTCGGCCACTACTCTTCCTTTGCCGA TGCGCTTCGTGATGCAGAGTTCCAGGCTTTCGTGAAGCAGGTCGAGAAGT TCTGCACACCGGAACGCGGCGAACATCTGCTCAGCGAGATGAAGATGCAG CTACCAACAATCGGTGAGATGCAAACTGCTGGCGATCTCTGTCGAAGATT GCTGGAGCCAATGTCCGCGGACAGCGACGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120225:138..521+

>mRNA_M-pyrifera_M_contig120225.4175.1 ID=mRNA_M-pyrifera_M_contig120225.4175.1|Name=mRNA_M-pyrifera_M_contig120225.4175.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig120225:138..521+ (Macrocystis pyrifera P11B4 male)
ATGCTACTGTTTGCTCAGCTGGCTGCAGTGGCGGCTCTCAAGCAACAGCC
GATCGGACGGGATCGTTTCCTCGTGCTGACCGGGATCTCGGCCACGCGTG
CTGGTTGGCCGGATGTTGCTGCCCGCTGTTATGAATTGGTCACGGCCAAC
TCTCCTCAGCACATTCTCGGCCACTACTCTTCCTTTGCCGATGCGCTTCG
TGATGCAGAGTTCCAGGCTTTCGTGAAGCAGGTCGAGAAGTTCTGCACAC
CGGAACGCGGCGAACATCTGCTCAGCGAGATGAAGATGCAGCTACCAACA
ATCGGTGAGATGCAAACTGCTGGCGATCTCTGTCGAAGATTGCTGGAGCC
AATGTCCGCGGACAGCGACGTGTGAATGCTACTGTTTGCTCAGCTGGCTG
CAGTGGCGGCTCTCAAGCAACAGCCGATCGGACGGGATCGTTTCCTCGTG
CTGACCGGGATCTCGGCCACGCGTGCTGGTTGGCCGGATGTTGCTGCCCG
CTGTTATGAATTGGTCACGGCCAACTCTCCTCAGCACATTCTCGGCCACT
ACTCTTCCTTTGCCGATGCGCTTCGTGATGCAGAGTTCCAGGCTTTCGTG
AAGCAGGTCGAGAAGTTCTGCACACCGGAACGCGGCGAACATCTGCTCAG
CGAGATGAAGATGCAGCTACCAACAATCGGTGAGATGCAAACTGCTGGCG
ATCTCTGTCGAAGATTGCTGGAGCCAATGTCCGCGGACAGCGACGTGTGA
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