mRNA_M-pyrifera_M_contig11986.4097.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11986.4097.1
Unique NamemRNA_M-pyrifera_M_contig11986.4097.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11986.4097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11986contigM-pyrifera_M_contig11986:7723..8408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size686
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11986.4097.1prot_M-pyrifera_M_contig11986.4097.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11986 7965..8324 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.4120636-UTR-M-pyrifera_M_contig11986:7722..79641622815718.4120636-UTR-M-pyrifera_M_contig11986:7722..7964Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11986 7723..7964 +
1692277536.685837-UTR-M-pyrifera_M_contig11986:7722..79641692277536.685837-UTR-M-pyrifera_M_contig11986:7722..7964Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11986 7723..7964 +
1622815718.432898-UTR-M-pyrifera_M_contig11986:8324..84081622815718.432898-UTR-M-pyrifera_M_contig11986:8324..8408Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11986 8325..8408 +
1692277536.708441-UTR-M-pyrifera_M_contig11986:8324..84081692277536.708441-UTR-M-pyrifera_M_contig11986:8324..8408Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11986 8325..8408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.4225612-CDS-M-pyrifera_M_contig11986:7964..83241622815718.4225612-CDS-M-pyrifera_M_contig11986:7964..8324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11986 7965..8324 +
1692277536.6946268-CDS-M-pyrifera_M_contig11986:7964..83241692277536.6946268-CDS-M-pyrifera_M_contig11986:7964..8324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11986 7965..8324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11986.4097.1

>prot_M-pyrifera_M_contig11986.4097.1 ID=prot_M-pyrifera_M_contig11986.4097.1|Name=mRNA_M-pyrifera_M_contig11986.4097.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MFGGTSRDCLGEPCGTVRGNLAAGLFGGISPRDGSGEPRRGTVRDNLSDG
NNTNLFPFHTYQQQSETVITHRYHEALELLPLRRHDQLKSNVRCANHVLQ
AGSRCRRPNRGLGRQLQPL*
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mRNA from alignment at M-pyrifera_M_contig11986:7723..8408+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11986.4097.1 ID=mRNA_M-pyrifera_M_contig11986.4097.1|Name=mRNA_M-pyrifera_M_contig11986.4097.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=686bp|location=Sequence derived from alignment at M-pyrifera_M_contig11986:7723..8408+ (Macrocystis pyrifera P11B4 male)
TGATTCTACGACACGTCTCGAACATTTTCTGCTGCATAAAATCAACAACA
CGTGACACGCTCGAACAATCCTAAAATGTCGGCACACCGACCGTATCTTT
CAAAACGTTCGATAGGTACTCTGTTCCATACCAGCGAAAACCACAAGGTT
CAACAGTGTTATATAGCGGTATCGTAGCAGTACCGTGATAGCGAGACTGT
TCGGGGGAATCTCTTGGGACTGTTCGGAAGAACCTCGTGGAAATGTTCGG
GGGAACCTCGCGGGACTGTTTGGGGGAACCTTGCGGGACTGTTCGGGGAA
ACCTCGCCGCGGGACTGTTTGGGGGGATCTCGCCGCGGGACGGTTCGGGG
GAACCTCGACGCGGGACTGTTCGGGATAACCTCTCAGACGGAAATAACAC
TAATCTTTTTCCGTTTCATACATATCAACAGCAAAGCGAAACCGTAATCA
CACATCGCTACCACGAAGCGCTTGAACTGTTGCCTCTACGTCGACACGAC
CAGCTCAAAAGCAACGTCCGATGTGCAAACCACGTCCTGCAAGCGGGCAG
CCGCTGCCGCCGCCCCAATCGGGGGCTAGGCAGGCAACTTCAACCTCTAT
AGCTGAACCCAACAAGCCCGGCCGAGAGACCTTTTTCGAAAAGGAGGCCG
GTGTCGATACCAAAACAATGTAAATAGGTACATGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11986:7723..8408+

>mRNA_M-pyrifera_M_contig11986.4097.1 ID=mRNA_M-pyrifera_M_contig11986.4097.1|Name=mRNA_M-pyrifera_M_contig11986.4097.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig11986:7723..8408+ (Macrocystis pyrifera P11B4 male)
ATGTTCGGGGGAACCTCGCGGGACTGTTTGGGGGAACCTTGCGGGACTGT
TCGGGGAAACCTCGCCGCGGGACTGTTTGGGGGGATCTCGCCGCGGGACG
GTTCGGGGGAACCTCGACGCGGGACTGTTCGGGATAACCTCTCAGACGGA
AATAACACTAATCTTTTTCCGTTTCATACATATCAACAGCAAAGCGAAAC
CGTAATCACACATCGCTACCACGAAGCGCTTGAACTGTTGCCTCTACGTC
GACACGACCAGCTCAAAAGCAACGTCCGATGTGCAAACCACGTCCTGCAA
GCGGGCAGCCGCTGCCGCCGCCCCAATCGGGGGCTAGGCAGGCAACTTCA
ACCTCTATAGATGTTCGGGGGAACCTCGCGGGACTGTTTGGGGGAACCTT
GCGGGACTGTTCGGGGAAACCTCGCCGCGGGACTGTTTGGGGGGATCTCG
CCGCGGGACGGTTCGGGGGAACCTCGACGCGGGACTGTTCGGGATAACCT
CTCAGACGGAAATAACACTAATCTTTTTCCGTTTCATACATATCAACAGC
AAAGCGAAACCGTAATCACACATCGCTACCACGAAGCGCTTGAACTGTTG
CCTCTACGTCGACACGACCAGCTCAAAAGCAACGTCCGATGTGCAAACCA
CGTCCTGCAAGCGGGCAGCCGCTGCCGCCGCCCCAATCGGGGGCTAGGCA
GGCAACTTCAACCTCTATAG
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