mRNA_M-pyrifera_M_contig119822.4077.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119822.4077.1
Unique NamemRNA_M-pyrifera_M_contig119822.4077.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119822.4077.1 vs. uniprot
Match: A0A2D6HDB0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HDB0_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 5.980e-12
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:   40 DADRLPLVNEIRDLAFRARTAMDFDALDLDVG--GVIVGEYSVALVDGISVEEGEMVGPELFVKSIEEDRVEFLFRGVALAR 279
            D  R P   E+R  A  ART ++FD +++DVG   ++ G  SVAL++G + + G+M+G EL ++ I  D +EFLF+GV LAR
Sbjct:  382 DRARRPHAVELRRRADLARTVLEFDEIEIDVGMIAIVSGSRSVALINGNTRQVGDMLGGELLIRDIRTDEIEFLFKGVILAR 463
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BLAST of mRNA_M-pyrifera_M_contig119822.4077.1 vs. uniprot
Match: A0A2D5B1K9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5B1K9_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 8.210e-12
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:   10 LETGLDRAAEDADRLPLVNEIRDLAFRARTAMDFDALDLDVGGVIVGE--YSVALVDGISVEEGEMVGPELFVKSIEEDRVEFLFRGVALARLI 285
            +E+ L  A  D  +  L  ++R L   A   + F+A+ LD+GGV + E    VAL++G SV EGE+VG EL V  I  D++EF FRG+ LAR +
Sbjct:  373 VESKLAIAEHDPKKSELAEKLRSLRDVADAVIAFEAIALDIGGVAIQEDLRPVALINGRSVTEGELVGTELIVHHIRTDQIEFAFRGMILARFL 466
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BLAST of mRNA_M-pyrifera_M_contig119822.4077.1 vs. uniprot
Match: A0A7Y5PY07_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5PY07_9PLAN)

HSP 1 Score: 62.4 bits (150), Expect = 3.070e-9
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:    4 APLETGLDRAAEDADRLPLVNEIRDLAFRARTAMDFDALDLDVGGVIVGE--YSVALVDGISVEEGEMVGPELFVKSIEEDRVEFLFRGVALAR 279
            A +E  L     D  R  L   IR  A  AR  +DF A++L +GGV + E    +AL++G ++ EG++V  +L +  I    +EF+FRG+ L R
Sbjct:  374 ATIEQQLPLVQHDPVRKGLAESIRQAAGDARVLIDFQAIELKIGGVAISEGIKPIALINGRALGEGDLVSKDLVIGGIRSGEIEFVFRGLVLVR 467
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119822.4077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2D6HDB0_9BACT5.980e-1243.90Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D5B1K9_9BACT8.210e-1242.55Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7Y5PY07_9PLAN3.070e-936.17Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119822contigM-pyrifera_M_contig119822:11..304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.5765262-CDS-M-pyrifera_M_contig119822:10..3041622815717.5765262-CDS-M-pyrifera_M_contig119822:10..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119822 11..304 +
1692277536.3987548-CDS-M-pyrifera_M_contig119822:10..3041692277536.3987548-CDS-M-pyrifera_M_contig119822:10..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119822 11..304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119822.4077.1prot_M-pyrifera_M_contig119822.4077.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119822 11..304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119822.4077.1

>prot_M-pyrifera_M_contig119822.4077.1 ID=prot_M-pyrifera_M_contig119822.4077.1|Name=mRNA_M-pyrifera_M_contig119822.4077.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MAPLETGLDRAAEDADRLPLVNEIRDLAFRARTAMDFDALDLDVGGVIVG
EYSVALVDGISVEEGEMVGPELFVKSIEEDRVEFLFRGVALARLITQ*
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mRNA from alignment at M-pyrifera_M_contig119822:11..304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119822.4077.1 ID=mRNA_M-pyrifera_M_contig119822.4077.1|Name=mRNA_M-pyrifera_M_contig119822.4077.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig119822:11..304+ (Macrocystis pyrifera P11B4 male)
ATGGCCCCGCTCGAGACCGGGCTGGACCGCGCGGCCGAGGACGCCGACCG
GCTGCCCTTGGTCAACGAGATCCGCGACCTCGCCTTCCGCGCCCGCACGG
CGATGGACTTCGACGCGCTCGACCTCGACGTCGGCGGCGTGATCGTCGGC
GAGTACAGCGTCGCGCTGGTCGATGGCATCTCCGTCGAGGAAGGCGAGAT
GGTCGGCCCCGAGCTGTTCGTCAAGAGCATCGAAGAGGACCGCGTCGAGT
TCCTCTTCCGGGGCGTCGCGTTGGCGCGCCTCATCACCCAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119822:11..304+

>mRNA_M-pyrifera_M_contig119822.4077.1 ID=mRNA_M-pyrifera_M_contig119822.4077.1|Name=mRNA_M-pyrifera_M_contig119822.4077.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig119822:11..304+ (Macrocystis pyrifera P11B4 male)
ATGGCCCCGCTCGAGACCGGGCTGGACCGCGCGGCCGAGGACGCCGACCG
GCTGCCCTTGGTCAACGAGATCCGCGACCTCGCCTTCCGCGCCCGCACGG
CGATGGACTTCGACGCGCTCGACCTCGACGTCGGCGGCGTGATCGTCGGC
GAGTACAGCGTCGCGCTGGTCGATGGCATCTCCGTCGAGGAAGGCGAGAT
GGTCGGCCCCGAGCTGTTCGTCAAGAGCATCGAAGAGGACCGCGTCGAGT
TCCTCTTCCGGGGCGTCGCGTTGGCGCGCCTCATCACCCAGTAAATGGCC
CCGCTCGAGACCGGGCTGGACCGCGCGGCCGAGGACGCCGACCGGCTGCC
CTTGGTCAACGAGATCCGCGACCTCGCCTTCCGCGCCCGCACGGCGATGG
ACTTCGACGCGCTCGACCTCGACGTCGGCGGCGTGATCGTCGGCGAGTAC
AGCGTCGCGCTGGTCGATGGCATCTCCGTCGAGGAAGGCGAGATGGTCGG
CCCCGAGCTGTTCGTCAAGAGCATCGAAGAGGACCGCGTCGAGTTCCTCT
TCCGGGGCGTCGCGTTGGCGCGCCTCATCACCCAGTAA
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