mRNA_M-pyrifera_M_contig119793.4066.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119793.4066.1
Unique NamemRNA_M-pyrifera_M_contig119793.4066.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119793.4066.1 vs. uniprot
Match: A0A7S4I837_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I837_9EUKA)

HSP 1 Score: 96.3 bits (238), Expect = 2.560e-21
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query:   10 DVAMQTPSVSRQHAAVQHRGGGSLQGGEEMYILDLGSTSGTFLNGQQLLPRQYYSLLVGDSVVFANSPPFVVCGPKGSYE 249
            D+ ++T SVSRQHA +QHRGGGS QG +E++I DL STSGTFLN QQL  R +Y+L  GD + F +SP FV+CG   +++
Sbjct:  242 DIQLETLSVSRQHAVIQHRGGGSKQGSDEVFIYDLNSTSGTFLNSQQLTSRSFYALQPGDILNFGSSPDFVLCGGPNNFQ 321          
BLAST of mRNA_M-pyrifera_M_contig119793.4066.1 vs. uniprot
Match: A0A078B5Q0_STYLE (Fha domain protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B5Q0_STYLE)

HSP 1 Score: 63.5 bits (153), Expect = 8.550e-10
Identity = 31/85 (36.47%), Postives = 51/85 (60.00%), Query Frame = 1
Query:   10 DVAMQTPSVSRQHAAVQHRGGGSLQGGEEMYILDLGSTSGTFLNGQQLLPRQYYSLLVGDSVVFANSPPFVVCGPKGSYEQQQQL 264
            DV M+ P++SR+HA +QH+  G      ++++ DLGST GTFLN +Q+ P QY  L + D + F  S   ++       E+++Q+
Sbjct:   49 DVFMENPTISRKHAIIQHKDTG------DIFLYDLGSTHGTFLNKRQIPPNQYIKLKLNDLIRFGQSTRMLILNGPEEVEEEEQV 127          
BLAST of mRNA_M-pyrifera_M_contig119793.4066.1 vs. uniprot
Match: A0A2P6U5K7_CHLSO (Serine threonine-phosphatase 4 regulatory subunit 3 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U5K7_CHLSO)

HSP 1 Score: 63.5 bits (153), Expect = 8.710e-10
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    7 ADVAMQTPSVSRQHAAVQHR------GGGSLQGGEEMYILDLGSTSGTFLNGQQLLPRQYYSLLVGDSVVFANS 210
            ADV    PS S+QHA +Q R        G + G    Y++DLGST+GTFLNG+++ P +YY LL  D V F NS
Sbjct:   88 ADVPTDHPSCSKQHAVLQFRLTEKEGADGMMHGSVRPYLMDLGSTNGTFLNGERVEPERYYELLEKDLVRFGNS 161          
BLAST of mRNA_M-pyrifera_M_contig119793.4066.1 vs. uniprot
Match: I7IF90_BABMR (Smad nuclear-interacting protein 1 n=1 Tax=Babesia microti (strain RI) TaxID=1133968 RepID=I7IF90_BABMR)

HSP 1 Score: 62.0 bits (149), Expect = 9.300e-10
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   10 DVAMQTPSVSRQHAAVQHRGGGSLQGGEEM-YILDLGSTSGTFLNGQQLLPRQYYSLLVGDSVVFANS 210
            D+ +   S+S+QHA +Q R    L+G E + Y++DLGST+GTFLNG+++ P +YY LL  DS+ FA S
Sbjct:  127 DLPVYHSSISKQHAVIQFR----LRGSEVLPYLIDLGSTNGTFLNGEKIEPSRYYQLLEKDSIKFAYS 190          
BLAST of mRNA_M-pyrifera_M_contig119793.4066.1 vs. uniprot
Match: A0A7M7GBT0_NASVI (FHA domain-containing protein n=3 Tax=Pteromalinae TaxID=272242 RepID=A0A7M7GBT0_NASVI)

HSP 1 Score: 62.4 bits (150), Expect = 2.180e-9
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1
Query:   10 DVAMQTPSVSRQHAAVQHRGGGSLQGGEEMYILDLGSTSGTFLNGQQLLPRQYYSLLVGDSVVFANSP-PFVVCGPKGSYEQQQQL 264
            D++M  P++SR HA  Q+R  G  + G+ MY+ DLGST GTF NG ++ P+ Y  +  G  + F  S   F+V  P    E++  L
Sbjct:  157 DMSMAHPTISRYHAVFQYRANGDEKNGKGMYVYDLGSTHGTFWNGNRIRPKVYVRVQGGHMIRFGCSQRKFIVKAPPCDQEEESDL 242          
BLAST of mRNA_M-pyrifera_M_contig119793.4066.1 vs. uniprot
Match: A0A2Z7BDU1_9LAMI (FHA domain-containing protein DDL n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BDU1_9LAMI)

HSP 1 Score: 60.1 bits (144), Expect = 3.680e-9
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    7 ADVAMQTPSVSRQHAAVQHRG------GGSLQGGEEMYILDLGSTSGTFLNGQQLLPRQYYSLLVGDSVVFANS 210
            AD+    PS S+QHA +QHR        G++      Y++DLGST+GTF+N  Q+ P++YY L   D++ F NS
Sbjct:   94 ADIPTDHPSCSKQHAVLQHRQVEQENPDGTMSRKVRPYVMDLGSTNGTFINDNQIEPQRYYELFEKDTLKFGNS 167          
BLAST of mRNA_M-pyrifera_M_contig119793.4066.1 vs. uniprot
Match: A0A3F2RZ26_9STRA (FHA domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RZ26_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.580e-9
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   10 DVAMQTPSVSRQHAAVQHRGGGSLQGGEEMYILDLGSTSGTFLNGQQLLPRQYYSLLVGDSVVFANS 210
            DV +Q PSVSRQHAA+ H         +++Y++DL S  GTF+NG+++ P++ Y L VGD + F  S
Sbjct:   52 DVWLQHPSVSRQHAAIIH------DKNQQIYVMDLDSAQGTFVNGEEIKPKEPYKLKVGDQIQFGAS 112          
BLAST of mRNA_M-pyrifera_M_contig119793.4066.1 vs. uniprot
Match: UPI0006C9D035 (kanadaptin n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C9D035)

HSP 1 Score: 60.8 bits (146), Expect = 7.610e-9
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   10 DVAMQTPSVSRQHAAVQHR--GGGSLQGGEEMYILDLGSTSGTFLNGQQLLPRQYYSLLVGDSVVFANSP-PFVVCGPKGSYEQQQQL 264
            D+ M  P++SR HA  QHR    G +Q G  +Y+ DLGST GTF NG Q+ P+ +  L  G  V F  S   F++  P    EQ+ +L
Sbjct:  160 DIPMANPTISRYHAIFQHRIVDDGKIQKG--LYVYDLGSTHGTFWNGNQIKPKVFVRLQGGHMVKFGCSQRKFIILAPDHDQEQESEL 245          
BLAST of mRNA_M-pyrifera_M_contig119793.4066.1 vs. uniprot
Match: A0A8C5L2I8_JACJA (Solute carrier family 4 member 1 adaptor protein n=2 Tax=Jaculus jaculus TaxID=51337 RepID=A0A8C5L2I8_JACJA)

HSP 1 Score: 60.5 bits (145), Expect = 1.040e-8
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 1
Query:   10 DVAMQTPSVSRQHAAVQHRGGG---SLQG-GEEMYILDLGSTSGTFLNGQQLLPRQYYSLLVGDSVVFANSPP-FVVCGPKGSYEQQQQL 264
            D++++ PSVSR HAA+QHR       + G G+  Y+ DLGST GTFLN  ++ PR Y  + VG    F  S   F++ GP+   E + +L
Sbjct:  145 DISLEHPSVSRYHAALQHRASDRDEEVDGHGQGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVFRFGGSSRLFILQGPEEDREAESEL 234          
BLAST of mRNA_M-pyrifera_M_contig119793.4066.1 vs. uniprot
Match: E1ZKP2_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZKP2_CHLVA)

HSP 1 Score: 60.5 bits (145), Expect = 1.060e-8
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    7 ADVAMQTPSVSRQHAAVQHR------GGGSLQGGEEMYILDLGSTSGTFLNGQQLLPRQYYSLLVGDSVVFANS 210
            ADV    PS S+QHA +Q+R        G ++     Y++DLGST+GTFLNG++L   +YY LL  D + F NS
Sbjct:  295 ADVPTDHPSCSKQHAVLQYRMTEKEGADGMMKAAVRPYLMDLGSTNGTFLNGERLEAERYYELLETDMLKFGNS 368          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119793.4066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I837_9EUKA2.560e-2156.25Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A078B5Q0_STYLE8.550e-1036.47Fha domain protein n=1 Tax=Stylonychia lemnae TaxI... [more]
A0A2P6U5K7_CHLSO8.710e-1047.30Serine threonine-phosphatase 4 regulatory subunit ... [more]
I7IF90_BABMR9.300e-1048.53Smad nuclear-interacting protein 1 n=1 Tax=Babesia... [more]
A0A7M7GBT0_NASVI2.180e-938.37FHA domain-containing protein n=3 Tax=Pteromalinae... [more]
A0A2Z7BDU1_9LAMI3.680e-941.89FHA domain-containing protein DDL n=1 Tax=Dorcocer... [more]
A0A3F2RZ26_9STRA5.580e-944.78FHA domain-containing protein n=4 Tax=Phytophthora... [more]
UPI0006C9D0357.610e-940.91kanadaptin n=1 Tax=Trichogramma pretiosum TaxID=74... [more]
A0A8C5L2I8_JACJA1.040e-841.11Solute carrier family 4 member 1 adaptor protein n... [more]
E1ZKP2_CHLVA1.060e-844.59Uncharacterized protein n=1 Tax=Chlorella variabil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119793contigM-pyrifera_M_contig119793:90..353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score63.9
Seed ortholog evalue3.9e-08
Seed eggNOG ortholog10116.ENSRNOP00000006525
Preferred nameSLC4A1AP
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005886,GO:0016020,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0071944,GO:0097159,GO:1901363
EggNOG free text desc.Solute carrier family 4 (anion exchanger), member 1, adaptor protein
EggNOG OGs35F3G@314146,38GVH@33154,3BBD1@33208,3CWUJ@33213,3J5GU@40674,486HM@7711,48YSZ@7742,4PSQ4@9989,KOG1881@1,KOG1881@2759
COG Functional cat.S
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
Exons1
Model size264
Cds size246
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815716.950018-UTR-M-pyrifera_M_contig119793:89..1071622815716.950018-UTR-M-pyrifera_M_contig119793:89..107Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119793 90..107 +
1692277536.1099627-UTR-M-pyrifera_M_contig119793:89..1071692277536.1099627-UTR-M-pyrifera_M_contig119793:89..107Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119793 90..107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815716.963443-CDS-M-pyrifera_M_contig119793:107..3531622815716.963443-CDS-M-pyrifera_M_contig119793:107..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119793 108..353 +
1692277536.1222572-CDS-M-pyrifera_M_contig119793:107..3531692277536.1222572-CDS-M-pyrifera_M_contig119793:107..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119793 108..353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119793.4066.1prot_M-pyrifera_M_contig119793.4066.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119793 108..353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119793.4066.1

>prot_M-pyrifera_M_contig119793.4066.1 ID=prot_M-pyrifera_M_contig119793.4066.1|Name=mRNA_M-pyrifera_M_contig119793.4066.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MQTPSVSRQHAAVQHRGGGSLQGGEEMYILDLGSTSGTFLNGQQLLPRQY
YSLLVGDSVVFANSPPFVVCGPKGSYEQQQQL
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mRNA from alignment at M-pyrifera_M_contig119793:90..353+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119793.4066.1 ID=mRNA_M-pyrifera_M_contig119793.4066.1|Name=mRNA_M-pyrifera_M_contig119793.4066.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig119793:90..353+ (Macrocystis pyrifera P11B4 male)
TCAGAAGCTGACGTGGCCATGCAGACACCAAGCGTATCTCGGCAGCATGC AGCCGTTCAGCACCGCGGAGGGGGAAGTCTCCAGGGCGGCGAGGAGATGT ACATACTCGACCTCGGCTCCACGTCAGGCACCTTCTTGAATGGCCAGCAG CTGCTGCCGAGGCAGTACTACTCCCTTCTCGTCGGCGACAGCGTTGTCTT CGCCAACTCCCCGCCGTTTGTGGTGTGTGGACCCAAGGGAAGCTACGAAC AGCAGCAGCAGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119793:90..353+

>mRNA_M-pyrifera_M_contig119793.4066.1 ID=mRNA_M-pyrifera_M_contig119793.4066.1|Name=mRNA_M-pyrifera_M_contig119793.4066.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig119793:90..353+ (Macrocystis pyrifera P11B4 male)
ATGCAGACACCAAGCGTATCTCGGCAGCATGCAGCCGTTCAGCACCGCGG
AGGGGGAAGTCTCCAGGGCGGCGAGGAGATGTACATACTCGACCTCGGCT
CCACGTCAGGCACCTTCTTGAATGGCCAGCAGCTGCTGCCGAGGCAGTAC
TACTCCCTTCTCGTCGGCGACAGCGTTGTCTTCGCCAACTCCCCGCCGTT
TGTGGTGTGTGGACCCAAGGGAAGCTACGAACAGCAGCAGCAGCTTATGC
AGACACCAAGCGTATCTCGGCAGCATGCAGCCGTTCAGCACCGCGGAGGG
GGAAGTCTCCAGGGCGGCGAGGAGATGTACATACTCGACCTCGGCTCCAC
GTCAGGCACCTTCTTGAATGGCCAGCAGCTGCTGCCGAGGCAGTACTACT
CCCTTCTCGTCGGCGACAGCGTTGTCTTCGCCAACTCCCCGCCGTTTGTG
GTGTGTGGACCCAAGGGAAGCTACGAACAGCAGCAGCAGCTT
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