mRNA_M-pyrifera_M_contig119610.4042.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119610.4042.1
Unique NamemRNA_M-pyrifera_M_contig119610.4042.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119610.4042.1 vs. uniprot
Match: UPI0003F0A5A2 (GH3 domain-containing protein-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0A5A2)

HSP 1 Score: 73.9 bits (180), Expect = 2.750e-15
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   37 VVVGEDYELAITTVSGLHRYRFGDVVRFVHYKGSAPVVEFRYRMGQLLDVRG 192
            V VGE YE+ IT +SGL+RYRFGDV+R V +    PVVEF YR GQLL+V G
Sbjct:   13 VEVGETYEMVITNISGLYRYRFGDVIRVVRFHNQCPVVEFLYRQGQLLNVHG 64
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BLAST of mRNA_M-pyrifera_M_contig119610.4042.1 vs. uniprot
Match: A0A0M0J719_9EUKA (Gh3 domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J719_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 3.950e-14
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 SWTSDTLLTVYSVVVGEDYELAITTVSGLHRYRFGDVVRFVHYKGSAPVVEFRYRMGQLLDVRG 192
            S  +D  L  + V +  DYEL +TT+ GL RYR GDVVR V   G+AP+VEFRYR GQLL++RG
Sbjct:  351 SAVADQTLLAHEVALNTDYELVVTTLGGLCRYRIGDVVRVVGRHGTAPLVEFRYRRGQLLNLRG 414
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BLAST of mRNA_M-pyrifera_M_contig119610.4042.1 vs. uniprot
Match: UPI000719B6B8 (GH3 domain-containing protein-like isoform X1 n=2 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719B6B8)

HSP 1 Score: 72.8 bits (177), Expect = 1.890e-13
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:   43 VGEDYELAITTVSGLHRYRFGDVVRFVHYKGSAPVVEFRYRMGQLLDVRG 192
            VGE YEL IT +SGL+RYRFGD+V+ V +    PV+EF YR GQLL+VRG
Sbjct:  451 VGESYELVITNMSGLYRYRFGDIVKVVRFFNECPVIEFLYRKGQLLNVRG 500
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BLAST of mRNA_M-pyrifera_M_contig119610.4042.1 vs. uniprot
Match: A0A6V1T7Q3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T7Q3_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 2.370e-13
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   37 VVVGEDYELAITTVSGLHRYRFGDVVRFVHYKGSAPVVEFRYRMGQLLDVRG 192
            V +G DYELA+TT+ GLHRYR GDVV+ V    + P VE RYR GQ++D+RG
Sbjct:   24 VEIGRDYELAVTTLCGLHRYRLGDVVKVVGKYKNMPKVEIRYRQGQIIDIRG 75
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BLAST of mRNA_M-pyrifera_M_contig119610.4042.1 vs. uniprot
Match: A0A7R9UC74_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC74_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.160e-13
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   46 GEDYELAITTVSGLHRYRFGDVVRFVHYKGSAPVVEFRYRMGQLLDVRG 192
            G+ YEL IT ++GL+RYRFGDVVR V Y+G AP+VE  YR GQ L+ RG
Sbjct:   97 GKCYELIITNLTGLYRYRFGDVVRCVGYEGEAPIVEIAYRKGQFLNARG 145
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BLAST of mRNA_M-pyrifera_M_contig119610.4042.1 vs. uniprot
Match: A0A2G8JS07_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JS07_STIJA)

HSP 1 Score: 71.6 bits (174), Expect = 4.440e-13
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   46 GEDYELAITTVSGLHRYRFGDVVRFVHYKGSAPVVEFRYRMGQLLDVRG 192
            G  YEL IT +SGL RYRFGDVVR + + G  PVVE+ YR GQLL+VRG
Sbjct:  223 GATYELVITNISGLFRYRFGDVVRVIDFHGECPVVEYLYRQGQLLNVRG 271
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BLAST of mRNA_M-pyrifera_M_contig119610.4042.1 vs. uniprot
Match: A0A2G8LLR7_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LLR7_STIJA)

HSP 1 Score: 71.6 bits (174), Expect = 4.810e-13
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   46 GEDYELAITTVSGLHRYRFGDVVRFVHYKGSAPVVEFRYRMGQLLDVRG 192
            G  YEL IT +SGL RYRFGDVVR + + G  PVVE+ YR GQLL+VRG
Sbjct:  415 GATYELVITNISGLFRYRFGDVVRVIDFHGECPVVEYLYRQGQLLNVRG 463
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BLAST of mRNA_M-pyrifera_M_contig119610.4042.1 vs. uniprot
Match: A0A7J7JQZ9_BUGNE (GHDC n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JQZ9_BUGNE)

HSP 1 Score: 71.2 bits (173), Expect = 6.460e-13
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   13 DTLLTVYSVVVGEDYELAITTVSGLHRYRFGDVVRFVHYKGSAPVVEFRYRMGQLLDVRG 192
            DTLL ++ V  GE YE+ I+  SGL+RYRFGDVV+ V +   +P+VEF YR GQ L+VRG
Sbjct:  269 DTLL-LHEVTEGEVYEMVISNCSGLYRYRFGDVVKVVGFHNQSPIVEFMYRQGQFLNVRG 327
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BLAST of mRNA_M-pyrifera_M_contig119610.4042.1 vs. uniprot
Match: A0A210PSZ7_MIZYE (GH3 domain-containing protein n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PSZ7_MIZYE)

HSP 1 Score: 71.2 bits (173), Expect = 6.590e-13
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   46 GEDYELAITTVSGLHRYRFGDVVRFVHYKGSAPVVEFRYRMGQLLDVRG 192
            G++YEL ITT SGL RYRFGDVV+ V +    P++EF YR GQLL+VRG
Sbjct:  446 GQEYELVITTASGLLRYRFGDVVKVVDFYNQCPIIEFMYRQGQLLNVRG 494
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BLAST of mRNA_M-pyrifera_M_contig119610.4042.1 vs. uniprot
Match: UPI0018857BF1 (probable indole-3-acetic acid-amido synthetase GH3.12 n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018857BF1)

HSP 1 Score: 71.2 bits (173), Expect = 6.590e-13
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:   19 LLTVYSVVVGEDYELAITTVSGLHRYRFGDVVRFVHYKGSAPVVEFRYRMGQLLDVRG 192
            LL    V VG +YEL +T  +GL+RYR GDVVR   +   APVVEFRYR GQLL V+G
Sbjct:  467 LLLADQVRVGAEYELVVTNATGLYRYRIGDVVRVCGFHNQAPVVEFRYRAGQLLSVKG 524
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119610.4042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0003F0A5A22.750e-1563.46GH3 domain-containing protein-like n=1 Tax=Saccogl... [more]
A0A0M0J719_9EUKA3.950e-1456.25Gh3 domain-containing protein n=1 Tax=Chrysochromu... [more]
UPI000719B6B81.890e-1364.00GH3 domain-containing protein-like isoform X1 n=2 ... [more]
A0A6V1T7Q3_HETAK2.370e-1359.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9UC74_9STRA4.160e-1363.27Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2G8JS07_STIJA4.440e-1365.31Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A2G8LLR7_STIJA4.810e-1365.31Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A7J7JQZ9_BUGNE6.460e-1356.67GHDC n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A... [more]
A0A210PSZ7_MIZYE6.590e-1363.27GH3 domain-containing protein n=2 Tax=Mizuhopecten... [more]
UPI0018857BF16.590e-1358.62probable indole-3-acetic acid-amido synthetase GH3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119610contigM-pyrifera_M_contig119610:287..481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score73.9
Seed ortholog evalue3e-11
Seed eggNOG ortholog10224.XP_006813593.1
Preferred nameGHDC
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0035580,GO:0036230,GO:0042119,GO:0042581,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503
EggNOG free text desc.GH3 domain-containing protein
EggNOG OGs2CM8R@1,2QPMW@2759,39UWV@33154,3BEHP@33208,3CZW0@33213
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.8141263-CDS-M-pyrifera_M_contig119610:286..4811622815715.8141263-CDS-M-pyrifera_M_contig119610:286..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119610 287..481 -
1692277535.6337104-CDS-M-pyrifera_M_contig119610:286..4811692277535.6337104-CDS-M-pyrifera_M_contig119610:286..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119610 287..481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119610.4042.1prot_M-pyrifera_M_contig119610.4042.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119610 287..481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119610.4042.1

>prot_M-pyrifera_M_contig119610.4042.1 ID=prot_M-pyrifera_M_contig119610.4042.1|Name=mRNA_M-pyrifera_M_contig119610.4042.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
SWTSDTLLTVYSVVVGEDYELAITTVSGLHRYRFGDVVRFVHYKGSAPVV
EFRYRMGQLLDVRG*
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mRNA from alignment at M-pyrifera_M_contig119610:287..481-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119610.4042.1 ID=mRNA_M-pyrifera_M_contig119610.4042.1|Name=mRNA_M-pyrifera_M_contig119610.4042.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig119610:287..481- (Macrocystis pyrifera P11B4 male)
TCATGGACAAGTGACACTTTGCTGACGGTGTATTCAGTGGTCGTTGGTGA
GGATTACGAGCTGGCGATTACGACGGTGTCGGGCCTGCACCGCTATCGGT
TCGGAGACGTTGTACGCTTTGTACATTACAAGGGAAGTGCTCCTGTAGTG
GAATTTCGCTACCGCATGGGCCAGCTCCTCGACGTCCGCGGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119610:287..481-

>mRNA_M-pyrifera_M_contig119610.4042.1 ID=mRNA_M-pyrifera_M_contig119610.4042.1|Name=mRNA_M-pyrifera_M_contig119610.4042.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig119610:287..481- (Macrocystis pyrifera P11B4 male)
TCATGGACAAGTGACACTTTGCTGACGGTGTATTCAGTGGTCGTTGGTGA
GGATTACGAGCTGGCGATTACGACGGTGTCGGGCCTGCACCGCTATCGGT
TCGGAGACGTTGTACGCTTTGTACATTACAAGGGAAGTGCTCCTGTAGTG
GAATTTCGCTACCGCATGGGCCAGCTCCTCGACGTCCGCGGGTAATCATG
GACAAGTGACACTTTGCTGACGGTGTATTCAGTGGTCGTTGGTGAGGATT
ACGAGCTGGCGATTACGACGGTGTCGGGCCTGCACCGCTATCGGTTCGGA
GACGTTGTACGCTTTGTACATTACAAGGGAAGTGCTCCTGTAGTGGAATT
TCGCTACCGCATGGGCCAGCTCCTCGACGTCCGCGGGTAA
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