mRNA_M-pyrifera_M_contig119496.4029.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119496.4029.1
Unique NamemRNA_M-pyrifera_M_contig119496.4029.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119496.4029.1 vs. uniprot
Match: UPI00053C98BB (acyl-CoA-binding domain-containing protein 4 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C98BB)

HSP 1 Score: 57.4 bits (137), Expect = 1.280e-6
Identity = 48/169 (28.40%), Postives = 72/169 (42.60%), Query Frame = 1 
Query:    4 RWWIPLVTGEGPGKRSGASMTTMSGSEAVVIGGFNGVDMLSDVHVLDMNEMHWRRVEVRGVGLPLP--------PLVGHAVVRVPNTNRVVLIGGSCSPEHLLTASFLLDPHSSTGAIVAAIGLNGEGNNPAPRFWHRASVTADGK-VIIFGGSSDRGIAFADFHTLNL 483
            +W  P  +G+ P  R       +     +  G  NG   LSD+HVLD+    W RVE +    PL         P  GH+++  P  N+++ +GG            + DP +ST + +   G      +P  R     SVT  GK ++IFGG   +     D H L+L
Sbjct:  170 QWIAPQTSGQRPKARYEHGAAVIRDKMYIYGGNHNG-RYLSDLHVLDLKNWTWSRVETKVATEPLESSSPVTLTPCAGHSLI--PWDNKLLSVGGHTKDPAESIQVKVFDPQTSTWSTLKTYG-----KSPVSRGGQ--SVTLVGKSLVIFGGQDAKRTLLNDLHVLDL 328
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BLAST of mRNA_M-pyrifera_M_contig119496.4029.1 vs. uniprot
Match: A0A7S4IUU8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IUU8_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 3.070e-6
Identity = 44/150 (29.33%), Postives = 68/150 (45.33%), Query Frame = 1 
Query:    4 RWWIPLVTGEGPGKRSGASMTTMSGSEAVVIGGFNGVDMLSDVHVLDMNEMHWRRVEVRGVGLPLPPLVGHAVVRVPNTNRVVLIGGSCSPEHLLTAS-FLLDPHSSTGAIVAAIGLNGEGNNPAPRFWHRASVTADGKVIIFGGSSDRG 450
            +W    V G+ P   +G S     G++  V+GGFNG D  S +H+LD   M W +  + G     PP   +  + V +  ++ L GG C          F+LD        +    +  EG++P  R+ H A V  D  + +FGG + RG
Sbjct:   19 KWTKAEVQGKFPSAYAGGSCCI--GTKIYVVGGFNGSDDSSTLHILDTETMKWTQPLILG---EKPPARSYHTLSVVD-GKLYLFGGFCKATATTMGDMFVLDTRRER---LEWKQITWEGHSPIERYEHSADVL-DHYIYVFGGGNSRG 158
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BLAST of mRNA_M-pyrifera_M_contig119496.4029.1 vs. uniprot
Match: A0A7S1M6D1_NEODS (Hypothetical protein (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1M6D1_NEODS)

HSP 1 Score: 53.9 bits (128), Expect = 1.830e-5
Identity = 33/92 (35.87%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:   25 TGEGPGKRSGASMTTMSGSEAVVIGGFNGVDMLSDVHVLDMN--------EMHWRRVEVRGVGLPLPPLVGHAVVRVPNTNRVVLIGGSCSP 276
            TG  P  R+GA+MT + G+  V+ GG      L+DV V  ++        E+HW +V+        PP  GHA+V  P+TN ++++GGS +P
Sbjct:  235 TGAVPSPRAGAAMTVVGGA-LVLAGGRGSSGALNDVFVGAVSRDLEDGEIEIHWIQVKCAA---SFPPRTGHAIVHAPDTNSLLIVGGSSAP 322
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119496.4029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00053C98BB1.280e-628.40acyl-CoA-binding domain-containing protein 4 n=1 T... [more]
A0A7S4IUU8_9EUKA3.070e-629.33Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S1M6D1_NEODS1.830e-535.87Hypothetical protein (Fragment) n=1 Tax=Neobodo de... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119496contigM-pyrifera_M_contig119496:53..535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue7e-09
Seed eggNOG ortholog44689.DDB0233505
Preferred nameLZTR1
KEGG koko:K20285
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005938,GO:0007049,GO:0008150,GO:0008360,GO:0009987,GO:0012505,GO:0022402,GO:0022603,GO:0022604,GO:0032153,GO:0032187,GO:0032506,GO:0032878,GO:0036214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051285,GO:0051286,GO:0051301,GO:0061160,GO:0061172,GO:0061640,GO:0065007,GO:0065008,GO:0071944,GO:0099568,GO:0099738,GO:1902405,GO:1902410,GO:1903047,GO:2000099,GO:2000100,GO:2000114,GO:2000769
EggNOG free text desc.Kelch motif
EggNOG OGs3XFKJ@554915,KOG0379@1,KOG0379@2759,KOG4265@1,KOG4265@2759
COG Functional cat.O
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size483
Cds size483
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.1124194-CDS-M-pyrifera_M_contig119496:52..5351622815715.1124194-CDS-M-pyrifera_M_contig119496:52..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119496 53..535 -
1692277535.3178828-CDS-M-pyrifera_M_contig119496:52..5351692277535.3178828-CDS-M-pyrifera_M_contig119496:52..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119496 53..535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119496.4029.1prot_M-pyrifera_M_contig119496.4029.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119496 53..535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119496.4029.1

>prot_M-pyrifera_M_contig119496.4029.1 ID=prot_M-pyrifera_M_contig119496.4029.1|Name=mRNA_M-pyrifera_M_contig119496.4029.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
MRWWIPLVTGEGPGKRSGASMTTMSGSEAVVIGGFNGVDMLSDVHVLDMN
EMHWRRVEVRGVGLPLPPLVGHAVVRVPNTNRVVLIGGSCSPEHLLTASF
LLDPHSSTGAIVAAIGLNGEGNNPAPRFWHRASVTADGKVIIFGGSSDRG
IAFADFHTLNL
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mRNA from alignment at M-pyrifera_M_contig119496:53..535-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119496.4029.1 ID=mRNA_M-pyrifera_M_contig119496.4029.1|Name=mRNA_M-pyrifera_M_contig119496.4029.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig119496:53..535- (Macrocystis pyrifera P11B4 male)
ATGCGTTGGTGGATTCCCCTGGTGACTGGGGAAGGGCCTGGAAAGCGGAG
TGGGGCGAGTATGACGACGATGAGTGGGAGCGAGGCGGTTGTGATTGGGG
GTTTTAACGGAGTGGACATGTTGAGTGACGTGCACGTGTTGGATATGAAC
GAGATGCATTGGAGGAGGGTTGAGGTGCGGGGGGTGGGTTTGCCGCTGCC
TCCCTTGGTAGGGCATGCTGTGGTGCGAGTTCCAAATACAAACCGAGTGG
TGTTGATTGGAGGGAGTTGTTCCCCTGAACACCTCCTCACCGCCTCCTTC
CTCCTTGATCCACACTCCTCCACTGGTGCCATCGTTGCTGCCATTGGATT
GAACGGAGAAGGCAACAACCCAGCCCCTCGATTCTGGCATAGAGCTTCAG
TGACTGCTGATGGGAAAGTCATCATCTTTGGAGGAAGCTCAGATCGAGGA
ATTGCCTTCGCCGATTTTCACACCCTCAACCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119496:53..535-

>mRNA_M-pyrifera_M_contig119496.4029.1 ID=mRNA_M-pyrifera_M_contig119496.4029.1|Name=mRNA_M-pyrifera_M_contig119496.4029.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig119496:53..535- (Macrocystis pyrifera P11B4 male)
ATGCGTTGGTGGATTCCCCTGGTGACTGGGGAAGGGCCTGGAAAGCGGAG
TGGGGCGAGTATGACGACGATGAGTGGGAGCGAGGCGGTTGTGATTGGGG
GTTTTAACGGAGTGGACATGTTGAGTGACGTGCACGTGTTGGATATGAAC
GAGATGCATTGGAGGAGGGTTGAGGTGCGGGGGGTGGGTTTGCCGCTGCC
TCCCTTGGTAGGGCATGCTGTGGTGCGAGTTCCAAATACAAACCGAGTGG
TGTTGATTGGAGGGAGTTGTTCCCCTGAACACCTCCTCACCGCCTCCTTC
CTCCTTGATCCACACTCCTCCACTGGTGCCATCGTTGCTGCCATTGGATT
GAACGGAGAAGGCAACAACCCAGCCCCTCGATTCTGGCATAGAGCTTCAG
TGACTGCTGATGGGAAAGTCATCATCTTTGGAGGAAGCTCAGATCGAGGA
ATTGCCTTCGCCGATTTTCACACCCTCAACCTTATGCGTTGGTGGATTCC
CCTGGTGACTGGGGAAGGGCCTGGAAAGCGGAGTGGGGCGAGTATGACGA
CGATGAGTGGGAGCGAGGCGGTTGTGATTGGGGGTTTTAACGGAGTGGAC
ATGTTGAGTGACGTGCACGTGTTGGATATGAACGAGATGCATTGGAGGAG
GGTTGAGGTGCGGGGGGTGGGTTTGCCGCTGCCTCCCTTGGTAGGGCATG
CTGTGGTGCGAGTTCCAAATACAAACCGAGTGGTGTTGATTGGAGGGAGT
TGTTCCCCTGAACACCTCCTCACCGCCTCCTTCCTCCTTGATCCACACTC
CTCCACTGGTGCCATCGTTGCTGCCATTGGATTGAACGGAGAAGGCAACA
ACCCAGCCCCTCGATTCTGGCATAGAGCTTCAGTGACTGCTGATGGGAAA
GTCATCATCTTTGGAGGAAGCTCAGATCGAGGAATTGCCTTCGCCGATTT
TCACACCCTCAACCTT
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