mRNA_M-pyrifera_M_contig119489.4026.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119489.4026.1
Unique NamemRNA_M-pyrifera_M_contig119489.4026.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119489.4026.1 vs. uniprot
Match: A0A6I6AFK1_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AFK1_9PLAN)

HSP 1 Score: 350 bits (899), Expect = 1.910e-121
Identity = 174/180 (96.67%), Postives = 177/180 (98.33%), Query Frame = 1 
Query:    1 YRFEGYFIFIVVLLIGLPMLCMVPVLPLLYVCERWTGQENLLLNRLVLLGAAGLGLAGGFWYLFKLRAEDLQRWKTRQESRQRDAADSVAEQVTIRNIYQYWSVTSYEPAAGFLIHTREGEWFYLFDQQLDDFEEDAFPRSEVTLLRAPHSRTILEIKTAGDEVDFVDFVEDEFIHEHGG 540
            YRFEGYFIFIVVLLIGLPMLCMVPVLPLLYVCERWTG+ENLLLNRLVLLGAAGLGL  GFWYL KLRAEDLQRWKTRQESRQRDAADSVAEQVTIRNIYQYWSVTSYEPAAGFLIHTREGEWFYLFDQ+LDDFEEDAFPRSEVTLLRAPH+RTILEIKTAGDEVDFVDFVEDEFIHEHGG
Sbjct:   19 YRFEGYFIFIVVLLIGLPMLCMVPVLPLLYVCERWTGEENLLLNRLVLLGAAGLGLVAGFWYLLKLRAEDLQRWKTRQESRQRDAADSVAEQVTIRNIYQYWSVTSYEPAAGFLIHTREGEWFYLFDQRLDDFEEDAFPRSEVTLLRAPHTRTILEIKTAGDEVDFVDFVEDEFIHEHGG 198
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BLAST of mRNA_M-pyrifera_M_contig119489.4026.1 vs. uniprot
Match: A0A517X1Q4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X1Q4_9PLAN)

HSP 1 Score: 125 bits (314), Expect = 1.260e-32
Identity = 63/171 (36.84%), Postives = 109/171 (63.74%), Query Frame = 1 
Query:    1 YRFEGYFIFIVVLLIGLPMLCMVPVLPLLYVCERWTGQENLLLNRLVLLGAAGLGLAGGFWYLFKLRAEDLQRWKTRQESRQRDAADSVAEQVTIRNIYQYWSVTSYEPAAGFLIHTREGEWFYLFDQQLDDFEEDAFPRSEVTLLRAPHSRTILEIKTAGDEVDFVDFVE 513
            +R + +F+ +V+ LIGLP++ +V ++P+  +        N+++NR + + +  + +  G   + K R++  + W   +E  +++ A S AE+ TI NI QYW++   EP  G+LI T+E EWFY+  +QL +FE D+FP+S+VT++RAP S+ ILEI T G E  ++D V+
Sbjct:   19 FRNDNFFMDLVIWLIGLPIVGLVLIMPVAILFRLLEVNNNVMINRAIAIVSISVAMVFGLKKILKNRSDKHRSWLKEKELYEKEFAKSYAEKNTITNIIQYWTIEEDEPIYGYLIRTQENEWFYIISEQLGEFELDSFPKSQVTIIRAPFSKNILEIDTKGREAKYMDTVQ 189
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BLAST of mRNA_M-pyrifera_M_contig119489.4026.1 vs. uniprot
Match: A0A517X6L2_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris TaxID=122 RepID=A0A517X6L2_9PLAN)

HSP 1 Score: 111 bits (278), Expect = 3.200e-27
Identity = 62/162 (38.27%), Postives = 98/162 (60.49%), Query Frame = 1 
Query:   28 IVVLLIGLPMLCMVPVLPLLYVCERWTGQENLLLNRLVLLGAAGLGLAGGFWYLFKLRAEDLQRWKTRQESRQRDAADSVAEQVTIRNIYQYWSVTSY-EPAAGFLIHTREGEWFYLFDQQLDDFEEDAFPRSEVTLLRAPHSRTILEIKTAGDEVDFVDFV 510
            I V LIGLP++ +V ++P+  +        ++ + R++ L    + +  GF  + K R +  + W   +E  +++ A + AE+ TI NI QYW +    EP  G+LI T+E EWFY+   QL DF+ED FP+S+VT++RAP S  +LEI T G EV+++D V
Sbjct:   28 IFVWLIGLPIIGLVLIMPVQLLIRLLVVDNSIYIIRVLGLITIIVSMIFGFKKILKHRRDQYESWLEEKEMHEKEVAGAYAEKFTITNIIQYWPIEEEGEPVKGYLIRTQENEWFYIISDQLYDFDEDYFPKSQVTIIRAPLSHHLLEILTQGREVEYMDTV 189
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BLAST of mRNA_M-pyrifera_M_contig119489.4026.1 vs. uniprot
Match: A0A517PIB4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PIB4_9PLAN)

HSP 1 Score: 107 bits (267), Expect = 1.230e-25
Identity = 62/171 (36.26%), Postives = 103/171 (60.23%), Query Frame = 1 
Query:   28 IVVLLIGLPMLCMVPVLPLLYVCERWTGQENLLLNRLVLLGAAGLGLAGGFWYLFKLRAEDLQRWKTRQESRQRDAADSVAEQVTIRNIYQYWSVTSY-EPAAGFLIHTREGEWFYLFDQQLDDFEEDAFPRSEVTLLRAPHSRTILEIKTAGDEVDFVDFVE-DEFIHEH 534
            I V LIG P++ +V ++P+  +        ++ + R++ L    + +  GF  + K R++  + W   +E  +++ A + AE  TI NI QYW +    EP  G+LI T+E EWFY+    L DF+ D FP+S+VT++RAP S+ +LEI T G EV+++D V+ D+FI ++
Sbjct:   28 IFVWLIGFPIVGLVLIMPVQLLIRLVVVNNSIFIIRVLGLITILVTMIFGFKKILKNRSDQYESWLEEKELHEKEVAGAYAEIFTITNIIQYWPIEEEGEPVKGYLIRTQENEWFYIISDDLYDFDVDCFPKSQVTIIRAPLSKYLLEIMTQGREVEYMDTVKLDQFIDDY 198
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119489.4026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6I6AFK1_9PLAN1.910e-12196.67Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A517X1Q4_9PLAN1.260e-3236.84Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A517X6L2_9PLAN3.200e-2738.27Uncharacterized protein n=1 Tax=Gimesia maris TaxI... [more]
A0A517PIB4_9PLAN1.230e-2536.26Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119489contigM-pyrifera_M_contig119489:2..541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.002645-CDS-M-pyrifera_M_contig119489:1..5411622815715.002645-CDS-M-pyrifera_M_contig119489:1..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119489 2..541 -
1692277535.2792857-CDS-M-pyrifera_M_contig119489:1..5411692277535.2792857-CDS-M-pyrifera_M_contig119489:1..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119489 2..541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119489.4026.1prot_M-pyrifera_M_contig119489.4026.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119489 2..541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119489.4026.1

>prot_M-pyrifera_M_contig119489.4026.1 ID=prot_M-pyrifera_M_contig119489.4026.1|Name=mRNA_M-pyrifera_M_contig119489.4026.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
YRFEGYFIFIVVLLIGLPMLCMVPVLPLLYVCERWTGQENLLLNRLVLLG
AAGLGLAGGFWYLFKLRAEDLQRWKTRQESRQRDAADSVAEQVTIRNIYQ
YWSVTSYEPAAGFLIHTREGEWFYLFDQQLDDFEEDAFPRSEVTLLRAPH
SRTILEIKTAGDEVDFVDFVEDEFIHEHGG
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mRNA from alignment at M-pyrifera_M_contig119489:2..541-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119489.4026.1 ID=mRNA_M-pyrifera_M_contig119489.4026.1|Name=mRNA_M-pyrifera_M_contig119489.4026.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig119489:2..541- (Macrocystis pyrifera P11B4 male)
TATCGCTTTGAGGGATATTTCATCTTTATCGTCGTCCTGCTGATCGGCTT
GCCGATGCTCTGCATGGTTCCGGTTCTACCTCTGCTCTATGTGTGCGAAC
GCTGGACCGGGCAGGAGAATCTGCTGCTGAATCGGCTGGTACTGCTCGGT
GCCGCCGGCCTGGGTCTGGCGGGGGGATTCTGGTATCTGTTCAAACTCCG
TGCCGAGGACCTGCAACGCTGGAAAACCAGGCAGGAAAGTCGCCAGCGGG
ATGCCGCGGATAGCGTGGCGGAACAGGTGACGATCCGCAATATCTACCAG
TACTGGTCGGTCACATCCTACGAGCCTGCGGCCGGTTTTTTAATCCATAC
CCGCGAAGGTGAGTGGTTCTATCTGTTTGATCAACAACTGGATGATTTTG
AAGAAGATGCCTTTCCACGCAGCGAAGTCACGCTGCTGAGAGCCCCGCAT
TCCAGAACGATTCTAGAGATCAAGACCGCCGGGGATGAGGTCGATTTCGT
GGATTTCGTAGAAGATGAATTCATTCATGAGCATGGCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119489:2..541-

>mRNA_M-pyrifera_M_contig119489.4026.1 ID=mRNA_M-pyrifera_M_contig119489.4026.1|Name=mRNA_M-pyrifera_M_contig119489.4026.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig119489:2..541- (Macrocystis pyrifera P11B4 male)
TATCGCTTTGAGGGATATTTCATCTTTATCGTCGTCCTGCTGATCGGCTT
GCCGATGCTCTGCATGGTTCCGGTTCTACCTCTGCTCTATGTGTGCGAAC
GCTGGACCGGGCAGGAGAATCTGCTGCTGAATCGGCTGGTACTGCTCGGT
GCCGCCGGCCTGGGTCTGGCGGGGGGATTCTGGTATCTGTTCAAACTCCG
TGCCGAGGACCTGCAACGCTGGAAAACCAGGCAGGAAAGTCGCCAGCGGG
ATGCCGCGGATAGCGTGGCGGAACAGGTGACGATCCGCAATATCTACCAG
TACTGGTCGGTCACATCCTACGAGCCTGCGGCCGGTTTTTTAATCCATAC
CCGCGAAGGTGAGTGGTTCTATCTGTTTGATCAACAACTGGATGATTTTG
AAGAAGATGCCTTTCCACGCAGCGAAGTCACGCTGCTGAGAGCCCCGCAT
TCCAGAACGATTCTAGAGATCAAGACCGCCGGGGATGAGGTCGATTTCGT
GGATTTCGTAGAAGATGAATTCATTCATGAGCATGGCGGCTATCGCTTTG
AGGGATATTTCATCTTTATCGTCGTCCTGCTGATCGGCTTGCCGATGCTC
TGCATGGTTCCGGTTCTACCTCTGCTCTATGTGTGCGAACGCTGGACCGG
GCAGGAGAATCTGCTGCTGAATCGGCTGGTACTGCTCGGTGCCGCCGGCC
TGGGTCTGGCGGGGGGATTCTGGTATCTGTTCAAACTCCGTGCCGAGGAC
CTGCAACGCTGGAAAACCAGGCAGGAAAGTCGCCAGCGGGATGCCGCGGA
TAGCGTGGCGGAACAGGTGACGATCCGCAATATCTACCAGTACTGGTCGG
TCACATCCTACGAGCCTGCGGCCGGTTTTTTAATCCATACCCGCGAAGGT
GAGTGGTTCTATCTGTTTGATCAACAACTGGATGATTTTGAAGAAGATGC
CTTTCCACGCAGCGAAGTCACGCTGCTGAGAGCCCCGCATTCCAGAACGA
TTCTAGAGATCAAGACCGCCGGGGATGAGGTCGATTTCGTGGATTTCGTA
GAAGATGAATTCATTCATGAGCATGGCGGC
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