mRNA_M-pyrifera_M_contig119461.4020.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119461.4020.1
Unique NamemRNA_M-pyrifera_M_contig119461.4020.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119461.4020.1 vs. uniprot
Match: A0A7S4HR22_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HR22_9EUKA)

HSP 1 Score: 144 bits (362), Expect = 2.630e-41
Identity = 66/122 (54.10%), Postives = 84/122 (68.85%), Query Frame = 1
Query:    4 LYSFWVPQIYCNATRGVRHALKPKYVFGITLTRMFIPMYFYLCPTNFLHIEPYPLAAQGLCAWLALQVAVLLLQDRYGPRFFIPKKFLPRKYDYFHRVEFDHEEEKECVICMCTVDPSQLNY 369
            +YSFWVPQI CN TR  R A   +Y+ G ++TR+FIP+YFY CP NF HIEP       L  W A Q+A+L+LQD+ GPRFFIPKK+LP+KYDY+  V     EE +CVICM  VD   +++
Sbjct:   46 IYSFWVPQIICNVTRETRFAFSKQYLIGTSVTRLFIPLYFYACPYNFFHIEPSTTFPMVLVGWQAFQIAILMLQDKKGPRFFIPKKYLPQKYDYYRSVF--SVEETDCVICMNPVDSRYIDH 165          
BLAST of mRNA_M-pyrifera_M_contig119461.4020.1 vs. uniprot
Match: L8GD19_ACACA (Zinc finger family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GD19_ACACA)

HSP 1 Score: 144 bits (363), Expect = 1.000e-38
Identity = 72/125 (57.60%), Postives = 88/125 (70.40%), Query Frame = 1
Query:    1 LLYSFWVPQIYCNATRGVRHALKPKYVFGITLTRMFIPMYFYLCPTNFLHIEPYPLAAQGLCAWLALQVAVLLLQDRYGPRFFIPKKFLPRKYDYFHRVEFDHE--EEKECVICMCTVDPSQLNY 369
            +LYS W+PQI+CNAT+  R+AL  KYV G+TLTR+ IPMYFY CP NFLH++P       L A+L LQV VL  QD  GPR+F+P++FLP KYDY   V  D E  E KECVICM  V P+Q +Y
Sbjct:  299 MLYSIWIPQIFCNATQFHRNALLKKYVVGMTLTRLCIPMYFYGCPYNFLHVQPNYNLLSWLAAYLLLQVFVLFTQDLLGPRWFLPRRFLPDKYDYQRPVHVDAEQGESKECVICMSVVLPNQRDY 423          
BLAST of mRNA_M-pyrifera_M_contig119461.4020.1 vs. uniprot
Match: F4PK06_CAVFA (RING-type domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PK06_CAVFA)

HSP 1 Score: 125 bits (315), Expect = 4.080e-31
Identity = 57/123 (46.34%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    1 LLYSFWVPQIYCNATRGVRHALKPKYVFGITLTRMFIPMYFYLCPTNFLHIEPYPLAAQGLCAWLALQVAVLLLQDRYGPRFFIPKKFLPRKYDYFHRVEFDHEEEKECVICMCTVDPSQLNY 369
            ++YSFWVPQIY NATR  R     +YV G++ +R+ IP+YF+ CP NF+ +EP    +  L  W+ LQ+ VL LQ+++GP+FFIPK+FLP KY Y  ++     + ++CVICMC V+    +Y
Sbjct:  431 IMYSFWVPQIYNNATRCTRRPFLWQYVLGMSFSRLAIPLYFFGCPYNFIPVEPDYTFSLMLFNWMCLQIFVLYLQEKWGPQFFIPKRFLPPKYQYARQIAPTIRDGQQCVICMCDVEADDNDY 553          
BLAST of mRNA_M-pyrifera_M_contig119461.4020.1 vs. uniprot
Match: A0A1X6PAD1_PORUM (RING-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAD1_PORUM)

HSP 1 Score: 122 bits (306), Expect = 1.160e-30
Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    4 LYSFWVPQIYCNATRGVRHALKPKYVFGITLTRMFIPMYFYLCPTNFLHIEPYPLAAQGLCAWLALQVAVLLLQDRYGPRFFIPKKFLPRKYDYFHRV 297
            LYSFW PQI  +AT   R  L P Y+ G++ TR+ IP+YFY CP NFLHI+P P  A  L AW+A Q  VL  Q  +GPR+F+PK+FLP KYDY+  V
Sbjct:  171 LYSFWTPQIILSATNDYRRPLHPLYILGMSTTRLAIPLYFYACPVNFLHIQPRPAVAAALVAWMATQAGVLASQHVWGPRWFVPKRFLPEKYDYYRPV 268          
BLAST of mRNA_M-pyrifera_M_contig119461.4020.1 vs. uniprot
Match: A0A067C7G2_SAPPC (RING-type domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C7G2_SAPPC)

HSP 1 Score: 123 bits (308), Expect = 1.940e-30
Identity = 65/137 (47.45%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 LLYSFWVPQIYCNATRGVRHALKPKYVFGITLTRMFIPMYFYLCPTNFLHIEP-YPLAAQ-GLC----AWLALQVAVLLLQDRYGPRFFIPKKFLPRKYDYFHRVEFD--------HEEEKECVICMCTVDPSQLNY 369
            L +SFWVPQI  NA R VR+     Y+ G++++R+F+P+YFY CP+NFL   P Y +  Q G+C     W+ALQ+AVLLLQ R GPRFF+P +FLP KY+Y  R+  D        H +E +CVICM  +D    +Y
Sbjct:  371 LAFSFWVPQIVHNAHREVRNPFDWVYMLGMSVSRLFLPLYFYGCPSNFLSALPVYQMQVQPGMCYLLVGWVALQIAVLLLQQRCGPRFFVPARFLPVKYNYERRINADQMSLLRANHGDEIDCVICMVELDMDARDY 507          
BLAST of mRNA_M-pyrifera_M_contig119461.4020.1 vs. uniprot
Match: A0A7S3UCQ8_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UCQ8_9CHLO)

HSP 1 Score: 123 bits (308), Expect = 1.990e-30
Identity = 56/121 (46.28%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    7 YSFWVPQIYCNATRGVRHALKPKYVFGITLTRMFIPMYFYLCPTNFLHIEPYPLAAQGLCAWLALQVAVLLLQDRYGPRFFIPKKFLPRKYDYFHRVEFDHEEEK------ECVICMCTVD 351
            YSFW+PQI  NA + +R  L P+Y+ G+++TR+FIP YF  CP NFLH++ +      L  W+ LQ  +LL Q  YGPR+F+P++FLP KYD++ +V+ D   E       +CVICM  VD
Sbjct:  384 YSFWMPQIVENAMQDIRKPLMPQYILGMSITRLFIPCYFLGCPQNFLHLDQHLQVCFILAGWVGLQTTMLLTQHYYGPRWFVPRRFLPEKYDFYRQVDLDMTVETGGSSDIDCVICMTPVD 504          
BLAST of mRNA_M-pyrifera_M_contig119461.4020.1 vs. uniprot
Match: T0Q5R4_SAPDV (RING-type domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q5R4_SAPDV)

HSP 1 Score: 123 bits (309), Expect = 2.530e-30
Identity = 65/137 (47.45%), Postives = 87/137 (63.50%), Query Frame = 1
Query:    1 LLYSFWVPQIYCNATRGVRHALKPKYVFGITLTRMFIPMYFYLCPTNFLHIEP-YPLAAQ-GLC----AWLALQVAVLLLQDRYGPRFFIPKKFLPRKYDYFHRVEFD--------HEEEKECVICMCTVDPSQLNY 369
            L +SFWVPQI  NA R VR      Y+ G++++R+F+P+YFY CP+NFL   P Y +  Q G+C     W+ALQ+AVLLLQ R GPRFF+P +FLP KY+Y  R+  D        H +E +CVICM  +D    +Y
Sbjct:  519 LAFSFWVPQIVHNAHREVRSPFDLVYILGMSVSRLFLPLYFYGCPSNFLSALPVYQMQVQPGMCYLLVGWVALQIAVLLLQQRCGPRFFVPARFLPVKYNYERRINADQMSLLRANHGDEIDCVICMVELDMDARDY 655          
BLAST of mRNA_M-pyrifera_M_contig119461.4020.1 vs. uniprot
Match: A0A067BII9_SAPPC (RING-type domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BII9_SAPPC)

HSP 1 Score: 122 bits (306), Expect = 2.960e-30
Identity = 65/137 (47.45%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 LLYSFWVPQIYCNATRGVRHALKPKYVFGITLTRMFIPMYFYLCPTNFLHIEP-YPLAAQ-GLC----AWLALQVAVLLLQDRYGPRFFIPKKFLPRKYDYFHRVEFD--------HEEEKECVICMCTVDPSQLNY 369
            L +SFWVPQI  NA R VR+     Y+ G++++R+F+P+YFY CP+NFL   P Y + AQ G+C     W+ALQ+AVL LQ R GPRFF+P +FLP KY+Y  R+  D        H +E +CVICM  +D    +Y
Sbjct:  341 LAFSFWVPQIVHNAHREVRNPFDWVYMLGMSVSRLFLPLYFYGCPSNFLSALPVYQMQAQPGMCYLLVGWVALQIAVLQLQQRCGPRFFVPARFLPVKYNYERRINADQMSLLRANHGDEIDCVICMVELDMDARDY 477          
BLAST of mRNA_M-pyrifera_M_contig119461.4020.1 vs. uniprot
Match: A0A8J4URL5_9MYCE (RING-type domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4URL5_9MYCE)

HSP 1 Score: 122 bits (305), Expect = 8.100e-30
Identity = 60/126 (47.62%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 LLYSFWVPQIYCNATRGVRHALKPKYVFGITLTRMFIPMYFYLCPTNFLHIEPYPLAAQGLCAWLALQVAVLLLQDRYGPRFFIPKKFLPRKYDYFHRVEF---DHEEEKECVICMCTVDPSQLNY 369
            L+YSFWVPQI  NA R ++     KYV GI++TR+ IP+YFY CP+NF+ +EP    +Q L  W+ +QV VL LQ   GP+FFIPK  LP KY Y+  +       EE + CVICM  V+ +  +Y
Sbjct:  485 LMYSFWVPQIISNAKRSIKKPFLWKYVIGISITRLVIPLYFYGCPSNFMQLEPVYGFSQFLVFWMIVQVVVLWLQSFLGPQFFIPKSLLPPKYQYYRPIPAVIRSREEGQGCVICMNDVEANDTDY 610          
BLAST of mRNA_M-pyrifera_M_contig119461.4020.1 vs. uniprot
Match: A0A2V3IS08_9FLOR (Transmembrane E3 ubiquitin-protein ligase 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS08_9FLOR)

HSP 1 Score: 121 bits (303), Expect = 1.190e-29
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    4 LYSFWVPQIYCNATRGVRHALKPKYVFGITLTRMFIPMYFYLCPTNFLHIEPYPLAAQGLCAWLALQVAVLLLQDRYGPRFFIPKKFLPRKYDYFHRV---------------------EFDHEEEKECVICM 339
            L+SFWVPQI  NA    R  L P Y+ G T+TR+ IP+YF+ CP NFLH++P P +A  L  WL+ Q  +LL Q ++GPR+FIPK+ LP KYDYF  +                     + D E  +EC ICM
Sbjct:  400 LFSFWVPQIVLNAVEDHRRPLLPSYIIGTTVTRLAIPLYFWGCPHNFLHVQPQPASAIALVVWLSTQATILLSQYKFGPRWFIPKELLPEKYDYFRPIVVDDDSADLEAGASEDEMLAADADPEPLRECCICM 532          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119461.4020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HR22_9EUKA2.630e-4154.10Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
L8GD19_ACACA1.000e-3857.60Zinc finger family protein n=1 Tax=Acanthamoeba ca... [more]
F4PK06_CAVFA4.080e-3146.34RING-type domain-containing protein n=1 Tax=Cavend... [more]
A0A1X6PAD1_PORUM1.160e-3055.10RING-type domain-containing protein n=1 Tax=Porphy... [more]
A0A067C7G2_SAPPC1.940e-3047.45RING-type domain-containing protein n=1 Tax=Saprol... [more]
A0A7S3UCQ8_9CHLO1.990e-3046.28Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
T0Q5R4_SAPDV2.530e-3047.45RING-type domain-containing protein n=1 Tax=Saprol... [more]
A0A067BII9_SAPPC2.960e-3047.45RING-type domain-containing protein n=1 Tax=Saprol... [more]
A0A8J4URL5_9MYCE8.100e-3047.62RING-type domain-containing protein n=1 Tax=Polysp... [more]
A0A2V3IS08_9FLOR1.190e-2944.36Transmembrane E3 ubiquitin-protein ligase 1 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119461contigM-pyrifera_M_contig119461:17..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score130.2
Seed ortholog evalue6.7e-28
Seed eggNOG ortholog264402.Cagra.2516s0005.1.p
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009664,GO:0009827,GO:0009987,GO:0010498,GO:0016043,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0042545,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0045229,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.plant-type cell wall modification
EggNOG OGs37I5S@33090,3GBCE@35493,3HQKS@3699,COG5540@1,KOG0828@2759
COG Functional cat.O
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons4
Model size369
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119461.4020.1prot_M-pyrifera_M_contig119461.4020.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119461 17..542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.614763-CDS-M-pyrifera_M_contig119461:16..871622815714.614763-CDS-M-pyrifera_M_contig119461:16..87Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119461 17..87 +
1692277535.1351173-CDS-M-pyrifera_M_contig119461:16..871692277535.1351173-CDS-M-pyrifera_M_contig119461:16..87Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119461 17..87 +
1622815714.624979-CDS-M-pyrifera_M_contig119461:136..1831622815714.624979-CDS-M-pyrifera_M_contig119461:136..183Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119461 137..183 +
1692277535.1505275-CDS-M-pyrifera_M_contig119461:136..1831692277535.1505275-CDS-M-pyrifera_M_contig119461:136..183Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119461 137..183 +
1622815714.6400216-CDS-M-pyrifera_M_contig119461:228..3711622815714.6400216-CDS-M-pyrifera_M_contig119461:228..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119461 229..371 +
1692277535.1588736-CDS-M-pyrifera_M_contig119461:228..3711692277535.1588736-CDS-M-pyrifera_M_contig119461:228..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119461 229..371 +
1622815714.6518002-CDS-M-pyrifera_M_contig119461:434..5421622815714.6518002-CDS-M-pyrifera_M_contig119461:434..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119461 435..542 +
1692277535.169888-CDS-M-pyrifera_M_contig119461:434..5421692277535.169888-CDS-M-pyrifera_M_contig119461:434..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119461 435..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119461.4020.1

>prot_M-pyrifera_M_contig119461.4020.1 ID=prot_M-pyrifera_M_contig119461.4020.1|Name=mRNA_M-pyrifera_M_contig119461.4020.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
LLYSFWVPQIYCNATRGVRHALKPKYVFGITLTRMFIPMYFYLCPTNFLH
IEPYPLAAQGLCAWLALQVAVLLLQDRYGPRFFIPKKFLPRKYDYFHRVE
FDHEEEKECVICMCTVDPSQLNY
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mRNA from alignment at M-pyrifera_M_contig119461:17..542+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119461.4020.1 ID=mRNA_M-pyrifera_M_contig119461.4020.1|Name=mRNA_M-pyrifera_M_contig119461.4020.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=526bp|location=Sequence derived from alignment at M-pyrifera_M_contig119461:17..542+ (Macrocystis pyrifera P11B4 male)
TTGCTCTATTCCTTCTGGGTCCCCCAGATTTATTGCAATGCAACAAGAGG TGTCAGGCATGCTCTGAAACCGTACGCTCCCCCATTTGTGTGCTTTTACT ATCCTGGCTTACGCGCTCAGAAAATACGTTTTTGGTATCACGCTGACTCG AATGTTCATCCCCATGTGTAAGTCATGCCTGAGGCGCTGGAGACTGAGCT GACCGGGAGTAGACTTTTACCTGTGCCCGACCAACTTTCTCCACATCGAG CCATACCCTTTGGCTGCCCAGGGTCTGTGCGCTTGGTTGGCTCTTCAAGT GGCCGTCCTCTTGCTGCAAGACCGCTACGGACCTCGCTTCTTCATCCCAA AGAAGGTAATACCAAGAGCAGTGCTGTATTGTCGTGCTGCGCGCCTCTCT CTTTCTGACCAAAGACAGTTCCTGCCGCGAAAGTACGACTACTTCCACCG AGTGGAATTCGATCATGAAGAGGAGAAGGAATGCGTCATTTGTATGTGCA CGGTGGACCCATCACAACTCAACTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119461:17..542+

>mRNA_M-pyrifera_M_contig119461.4020.1 ID=mRNA_M-pyrifera_M_contig119461.4020.1|Name=mRNA_M-pyrifera_M_contig119461.4020.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig119461:17..542+ (Macrocystis pyrifera P11B4 male)
TTGCTCTATTCCTTCTGGGTCCCCCAGATTTATTGCAATGCAACAAGAGG
TGTCAGGCATGCTCTGAAACCTTGCTCTATTCCTTCTGGGTCCCCCAGAT
TTATTGCAATGCAACAAGAGGTGTCAGGCATGCTCTGAAACCAAAATACG
TTTTTGGTATCACGCTGACTCGAATGTTCATCCCCATGTAAAATACGTTT
TTGGTATCACGCTGACTCGAATGTTCATCCCCATGTACTTTTACCTGTGC
CCGACCAACTTTCTCCACATCGAGCCATACCCTTTGGCTGCCCAGGGTCT
GTGCGCTTGGTTGGCTCTTCAAGTGGCCGTCCTCTTGCTGCAAGACCGCT
ACGGACCTCGCTTCTTCATCCCAAAGAAGACTTTTACCTGTGCCCGACCA
ACTTTCTCCACATCGAGCCATACCCTTTGGCTGCCCAGGGTCTGTGCGCT
TGGTTGGCTCTTCAAGTGGCCGTCCTCTTGCTGCAAGACCGCTACGGACC
TCGCTTCTTCATCCCAAAGAAGTTCCTGCCGCGAAAGTACGACTACTTCC
ACCGAGTGGAATTCGATCATGAAGAGGAGAAGGAATGCGTCATTTGTATG
TGCACGGTGGACCCATCACAACTCAACTACTTCCTGCCGCGAAAGTACGA
CTACTTCCACCGAGTGGAATTCGATCATGAAGAGGAGAAGGAATGCGTCA
TTTGTATGTGCACGGTGGACCCATCACAACTCAACTAC
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