mRNA_M-pyrifera_M_contig101888.399.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101888.399.1
Unique NamemRNA_M-pyrifera_M_contig101888.399.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101888.399.1 vs. uniprot
Match: A0A433Q7L9_9FUNG (DUF887-domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q7L9_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 1.170e-12
Identity = 39/114 (34.21%), Postives = 67/114 (58.77%), Query Frame = 1
Query:    1 PVFHWYGMVFLLFELSTPFINLAWMMDKAGCKNATLAMANFGMAVLTFFVVRILFGTAMLTRIWLSLLDLEVVGIPPYVRATFVFVAPLLGLLNFYWFYMIVQFVLKQAKGSPK 342
            P  ++YG  FL+FELSTPF+N+ W MDK G   +   + N    + TFF  R++FG  M  + +L +L + +  +P ++   +     +L LLN YWF+ +V+ + ++ + +PK
Sbjct:  144 PFLNYYGAPFLMFELSTPFLNINWFMDKLGMTGSIAQLINGFFLLSTFFFARLVFGFYMSFQTYLDVLAV-IDRVPMFLCIIYSLANVVLNLLNTYWFWQMVKSLARRFQPAPK 256          
BLAST of mRNA_M-pyrifera_M_contig101888.399.1 vs. uniprot
Match: A0A433PX36_9FUNG (TLC domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PX36_9FUNG)

HSP 1 Score: 72.0 bits (175), Expect = 1.460e-12
Identity = 38/115 (33.04%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 PVFHWYGMVFLLFELSTPFINLAWMMDKAGCKNATLAMANFGMAVLTFFVVRILFGTAMLTRIWLSLLDLEVVGIPPYVRATFVFVAPLLGLLNFYWFYMIVQFVLKQAKGSPKK 345
            P  ++YG VFL+FE+STPF+N+ W +DK G   +   + N    +LTFF VR++FG  M  R ++ +    +  +P +    +     +L  LN YWF ++++ + ++ K +P K
Sbjct:  148 PFLNYYGAVFLMFEMSTPFLNINWFLDKLGMTGSPAQIVNGIFLLLTFFWVRLVFGFYMSYRTYVDV-SAVIDRVPTFHCVVYGVANVVLNFLNVYWFGLMIKSLSRRFKSAPPK 261          
BLAST of mRNA_M-pyrifera_M_contig101888.399.1 vs. uniprot
Match: A0A8H6FGI0_9LECA (TLC domain-containing protein n=2 Tax=Letharia TaxID=112415 RepID=A0A8H6FGI0_9LECA)

HSP 1 Score: 71.2 bits (173), Expect = 2.390e-12
Identity = 42/120 (35.00%), Postives = 65/120 (54.17%), Query Frame = 1
Query:    1 PVFHWYGMVFLLFELSTPFINLAWMMDKAGCKNATLAMANFGMAVLTFFVVRILFGTAMLTR----IWLSLLDLEVVGIPPYVRATFVFVAPLLGLLNFYWFYMIVQFVLKQAKGSPKKE 348
            P  ++YG+ F+L+ELSTPF+N+ W MDK G   +T  + N    V TF   R+++GT    R    IW +      + +PP++   +V     L +LNFYWF  ++   L++    P KE
Sbjct:  161 PFCNYYGLNFILYELSTPFLNVHWFMDKLGMTGSTAQLVNGIALVTTFGASRLVWGTYQSVRMYQDIWTAFETPGGLPVPPWLAVAYVVSNTTLSVLNFYWFGRMIT-TLRKRFEKPSKE 279          
BLAST of mRNA_M-pyrifera_M_contig101888.399.1 vs. uniprot
Match: A0A1R1PXH1_ZANCU (Putative TLC domain-containing protein n=1 Tax=Zancudomyces culisetae TaxID=1213189 RepID=A0A1R1PXH1_ZANCU)

HSP 1 Score: 70.9 bits (172), Expect = 3.190e-12
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    1 PVFHWYGMVFLLFELSTPFINLAWMMDKAGCKNATLAMANFGMAVLTFFVVRILFGTAMLTRIWLSL-LDLEVVGIPPYVRATFVFVAPLLGLLNFYWFYMIVQFVLKQAKGS 336
            P   +Y  VFL FE ST F+N+ W  DK G   +T  + N  +  + FF VR++FGT  + + +  + +D E VGI  Y+ A           LN +WFY IVQ ++K+ K S
Sbjct:  163 PNVMYYVPVFLFFEASTIFLNMVWFCDKVGLSGSTFQLVNGVLLAIVFFFVRLVFGTLKMIQFYKDVAIDAENVGIMLYILAHLSITV--FWSLNVFWFYKIVQSIIKKCKAS 273          
BLAST of mRNA_M-pyrifera_M_contig101888.399.1 vs. uniprot
Match: A0A397IAR5_9GLOM (TLC domain-containing protein n=2 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397IAR5_9GLOM)

HSP 1 Score: 70.5 bits (171), Expect = 4.830e-12
Identity = 38/115 (33.04%), Postives = 63/115 (54.78%), Query Frame = 1
Query:    1 PVFHWYGMVFLLFELSTPFINLAWMMDKAGCKNATLAMANFGMAVLTFFVVRILFGTAMLTRIWLSLLDLEVVGIPPYVRATFVFVAPLLGLLNFYWFYMIVQFVLKQAKGSPKK 345
            P  ++YG VFL+FE+STPF+NL W MDK G       + N    + +FF  RIL+G  M    +  +  + +  +P ++   +     +L +LN YWFY +++ ++K+     KK
Sbjct:  150 PFLNYYGAVFLMFEISTPFLNLHWFMDKLGLTGTLFQLINGVFLLTSFFCARILWGFYMSYHAFTEVSQV-ISQVPTFLFVIYGGANIVLNILNLYWFYKMIEALMKRFNTGEKK 263          
BLAST of mRNA_M-pyrifera_M_contig101888.399.1 vs. uniprot
Match: A0A1Y2D2V4_9FUNG (TLC domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2D2V4_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 8.640e-12
Identity = 38/117 (32.48%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    1 PVFHWYGMVFLLFELSTPFINLAWMMDKAGCKNATLAMANFGMAVLTFFVVRILFGTAMLTRIWLSL-LDLEVVGIPPYVRATFVFVAPLLGLLNFYWFYMIVQFVLKQAKGSPKKE 348
            P   +YG VF+++ELSTPF+N+ W+ DK G    TL + N  + ++ FF+ RI+FG  + +  WL + +  +   IP Y+      +  +L  LN +WFY ++  V ++ +   + E
Sbjct:   87 PFIQYYGSVFIMYELSTPFLNIHWVCDKLGMTGGTLQLVNGIILLIVFFLARIVFG--LYSSFWLFVEMYHQYEKIPLYLVIMISVINAILNSLNIFWFYKMIDSVRRRFQPGGRYE 201          
BLAST of mRNA_M-pyrifera_M_contig101888.399.1 vs. uniprot
Match: A0A261XVT4_9FUNG (TLC domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XVT4_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 9.700e-12
Identity = 38/115 (33.04%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    1 PVFHWYGMVFLLFELSTPFINLAWMMDKAGCKNATLAMANFGMAVLTFFVVRILFGTAMLTRIWLSLLDLEVVGIPPYVRATFVFVAPLLGLLNFYWFYMIVQFVLKQAKGSPKK 345
            P  ++YG VF++FELST F+N+ W MDK G   +   + N  + +  FF VR++FGT M    ++ +   + + +P ++ + ++    +  +LN+YWFY++++ +   AK  PKK
Sbjct:  153 PFINYYGAVFIMFELSTIFLNINWFMDKLGYTGSKAQLINGIILLSAFFGVRVIFGTYMSYWTFVDIFAAKHL-VPTWLTSIYLAANTVHNILNYYWFYLMIKML---AKRFPKK 263          
BLAST of mRNA_M-pyrifera_M_contig101888.399.1 vs. uniprot
Match: A0A507D1C6_9FUNG (TLC domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507D1C6_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 1.480e-11
Identity = 42/117 (35.90%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    1 PVFHWYGMVFLLFELSTPFINLAWMMDKAGCKNATLAMANFGMAVLTFFVVRILFGTAMLTRIWLSLLDLEVVGIPPYVRATFVFVAPLLGLLNFYWFYMIVQFVLKQAKGS--PKK 345
            P   ++   FLLFELSTPF+N+ W  DK G   + L +AN  M +++FF VR+++G   +   + S+L  +   + P++   +   +  L +LNFYWFY I   V ++  G+  PKK
Sbjct:  141 PFLMYFAAPFLLFELSTPFLNVNWFCDKLGMTGSILQLANGVMLMISFFCVRLVYGVYNVYDFFRSVLS-QREKVAPHLILIYGTASITLTVLNFYWFYRIFDAVRRRFVGASPPKK 256          
BLAST of mRNA_M-pyrifera_M_contig101888.399.1 vs. uniprot
Match: A0A1S8W190_9FUNG (TLC domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W190_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 1.630e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    1 PVFHWYGMVFLLFELSTPFINLAWMMDKAGCKNATLAMANFGMAVLTFFVVRILFGTAMLTRIWLSLLDLEVVGIPPYVRATFVFVAPLLGLLNFYWFYMIVQFVLKQAKGS 336
            P  ++YG VFL+FE+ST F+N+ W  DK G    TL   N  + + TFF VR++FG     R +++  + +   +P Y+   +     LL  LN +WF  +++ V+ + KG+
Sbjct:  142 PFLYYYGSVFLMFEISTVFLNIHWFCDKTGRAGTTLQWVNGIILLTTFFSVRLVFGIYQSMRFFMTCFE-QWDSVPKYLFIVYAMSNILLCSLNIFWFSRMIKSVVSRFKGN 252          
BLAST of mRNA_M-pyrifera_M_contig101888.399.1 vs. uniprot
Match: A0A8H3EPR0_9LECA (TLC domain-containing protein n=1 Tax=Alectoria fallacina TaxID=1903189 RepID=A0A8H3EPR0_9LECA)

HSP 1 Score: 68.2 bits (165), Expect = 3.240e-11
Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 1
Query:    1 PVFHWYGMVFLLFELSTPFINLAWMMDKAGCKNATLAMANFGMAVLTFFVVRILFGTAMLTR----IWLSLLDLEVVGIPPYVRATFVFVAPLLGLLNFYWFYMIVQFVLKQAKGSPKKE 348
            P  ++YG+ F+L+ELSTP +N+ W MDK G   +T  + N    V TF   R+++GT    R    IW +      + +PP++   +V     L +LNFYWF  ++   L++    P KE
Sbjct:  161 PFCNYYGLNFVLYELSTPLLNIHWFMDKLGMTGSTAQLVNGIALVTTFGASRLVWGTYQSVRMYQDIWAAFEAPAGLPVPPWLAVAYVVSNTTLSVLNFYWFGKMIT-TLRKRFEKPGKE 279          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101888.399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A433Q7L9_9FUNG1.170e-1234.21DUF887-domain-containing protein n=1 Tax=Jimgerdem... [more]
A0A433PX36_9FUNG1.460e-1233.04TLC domain-containing protein n=1 Tax=Endogone sp.... [more]
A0A8H6FGI0_9LECA2.390e-1235.00TLC domain-containing protein n=2 Tax=Letharia Tax... [more]
A0A1R1PXH1_ZANCU3.190e-1237.17Putative TLC domain-containing protein n=1 Tax=Zan... [more]
A0A397IAR5_9GLOM4.830e-1233.04TLC domain-containing protein n=2 Tax=Diversispora... [more]
A0A1Y2D2V4_9FUNG8.640e-1232.48TLC domain-containing protein n=1 Tax=Rhizoclosmat... [more]
A0A261XVT4_9FUNG9.700e-1233.04TLC domain-containing protein n=1 Tax=Bifiguratus ... [more]
A0A507D1C6_9FUNG1.480e-1135.90TLC domain-containing protein n=1 Tax=Synchytrium ... [more]
A0A1S8W190_9FUNG1.630e-1133.93TLC domain-containing protein n=1 Tax=Batrachochyt... [more]
A0A8H3EPR0_9LECA3.240e-1134.17TLC domain-containing protein n=1 Tax=Alectoria fa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101888contigM-pyrifera_M_contig101888:124..474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.9
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog78898.MVEG_02153T0
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0012505,GO:0016020,GO:0016021,GO:0031224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464
EggNOG free text desc.TLC domain
EggNOG OGs1GUWF@112252,39VH8@33154,3NWZ1@4751,KOG4561@1,KOG4561@2759
COG Functional cat.T
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size330
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.9136267-UTR-M-pyrifera_M_contig101888:123..1441622815518.9136267-UTR-M-pyrifera_M_contig101888:123..144Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101888 124..144 +
1692277446.9720604-UTR-M-pyrifera_M_contig101888:123..1441692277446.9720604-UTR-M-pyrifera_M_contig101888:123..144Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101888 124..144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.9301376-CDS-M-pyrifera_M_contig101888:144..4741622815518.9301376-CDS-M-pyrifera_M_contig101888:144..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101888 145..474 +
1692277446.9845657-CDS-M-pyrifera_M_contig101888:144..4741692277446.9845657-CDS-M-pyrifera_M_contig101888:144..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101888 145..474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101888.399.1prot_M-pyrifera_M_contig101888.399.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101888 145..474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101888.399.1

>prot_M-pyrifera_M_contig101888.399.1 ID=prot_M-pyrifera_M_contig101888.399.1|Name=mRNA_M-pyrifera_M_contig101888.399.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
MVFLLFELSTPFINLAWMMDKAGCKNATLAMANFGMAVLTFFVVRILFGT
AMLTRIWLSLLDLEVVGIPPYVRATFVFVAPLLGLLNFYWFYMIVQFVLK
QAKGSPKKE*
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mRNA from alignment at M-pyrifera_M_contig101888:124..474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101888.399.1 ID=mRNA_M-pyrifera_M_contig101888.399.1|Name=mRNA_M-pyrifera_M_contig101888.399.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig101888:124..474+ (Macrocystis pyrifera P11B4 male)
CCAGTGTTCCACTGGTACGGGATGGTGTTCCTCCTCTTCGAGCTCTCGAC GCCCTTCATCAACCTGGCGTGGATGATGGACAAGGCAGGCTGCAAGAACG CCACCCTGGCGATGGCGAACTTTGGCATGGCCGTTCTTACCTTCTTCGTC GTGCGCATTCTCTTTGGTACCGCCATGCTTACGCGCATTTGGCTGAGTCT GTTGGACCTTGAGGTTGTAGGCATTCCTCCCTACGTCAGAGCAACGTTCG TGTTCGTAGCACCTCTGCTGGGCCTCTTGAACTTTTACTGGTTCTACATG ATTGTCCAGTTCGTGCTGAAGCAGGCCAAGGGATCTCCCAAGAAGGAGTA A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101888:124..474+

>mRNA_M-pyrifera_M_contig101888.399.1 ID=mRNA_M-pyrifera_M_contig101888.399.1|Name=mRNA_M-pyrifera_M_contig101888.399.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig101888:124..474+ (Macrocystis pyrifera P11B4 male)
ATGGTGTTCCTCCTCTTCGAGCTCTCGACGCCCTTCATCAACCTGGCGTG
GATGATGGACAAGGCAGGCTGCAAGAACGCCACCCTGGCGATGGCGAACT
TTGGCATGGCCGTTCTTACCTTCTTCGTCGTGCGCATTCTCTTTGGTACC
GCCATGCTTACGCGCATTTGGCTGAGTCTGTTGGACCTTGAGGTTGTAGG
CATTCCTCCCTACGTCAGAGCAACGTTCGTGTTCGTAGCACCTCTGCTGG
GCCTCTTGAACTTTTACTGGTTCTACATGATTGTCCAGTTCGTGCTGAAG
CAGGCCAAGGGATCTCCCAAGAAGGAGTAAATGGTGTTCCTCCTCTTCGA
GCTCTCGACGCCCTTCATCAACCTGGCGTGGATGATGGACAAGGCAGGCT
GCAAGAACGCCACCCTGGCGATGGCGAACTTTGGCATGGCCGTTCTTACC
TTCTTCGTCGTGCGCATTCTCTTTGGTACCGCCATGCTTACGCGCATTTG
GCTGAGTCTGTTGGACCTTGAGGTTGTAGGCATTCCTCCCTACGTCAGAG
CAACGTTCGTGTTCGTAGCACCTCTGCTGGGCCTCTTGAACTTTTACTGG
TTCTACATGATTGTCCAGTTCGTGCTGAAGCAGGCCAAGGGATCTCCCAA
GAAGGAGTAA
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