mRNA_M-pyrifera_M_contig119315.3982.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119315.3982.1
Unique NamemRNA_M-pyrifera_M_contig119315.3982.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119315.3982.1 vs. uniprot
Match: A0A2C9M5V1_BIOGL (Transcription and mRNA export factor ENY2 n=3 Tax=Euthyneura TaxID=216307 RepID=A0A2C9M5V1_BIOGL)

HSP 1 Score: 113 bits (282), Expect = 1.790e-30
Identity = 53/71 (74.65%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:   94 RSRLKEMLKSRLIECGWRDELKAYCKEVIKSKGLEKITVEELVSEITPRGRATVPDEIKADLLKRIRQFLA 306
            R RLKE+L++RLIECGWRD+LKAYCKE+++ KGLE ITV++LVSEITPRGR+ VPDEIK +LL+RIR FLA
Sbjct:   28 RERLKELLRARLIECGWRDQLKAYCKEIVQQKGLEHITVDDLVSEITPRGRSLVPDEIKKELLQRIRTFLA 98
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BLAST of mRNA_M-pyrifera_M_contig119315.3982.1 vs. uniprot
Match: A0A1S3IAJ2_LINUN (Transcription and mRNA export factor ENY2 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IAJ2_LINUN)

HSP 1 Score: 110 bits (276), Expect = 1.460e-29
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:   94 RSRLKEMLKSRLIECGWRDELKAYCKEVIKSKGLEKITVEELVSEITPRGRATVPDEIKADLLKRIRQFLA 306
            R RLKE+L++RLIECGWRD+LKAYCK+V+K KGLE ITV++LV+EITPRGRA VPD +K +LL RIR FLA
Sbjct:   28 RERLKELLRTRLIECGWRDQLKAYCKDVVKQKGLEHITVDDLVAEITPRGRAMVPDNVKKELLHRIRTFLA 98
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BLAST of mRNA_M-pyrifera_M_contig119315.3982.1 vs. uniprot
Match: A0A210QN45_MIZYE (Transcription and mRNA export factor ENY2 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210QN45_MIZYE)

HSP 1 Score: 110 bits (274), Expect = 2.950e-29
Identity = 51/71 (71.83%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:   94 RSRLKEMLKSRLIECGWRDELKAYCKEVIKSKGLEKITVEELVSEITPRGRATVPDEIKADLLKRIRQFLA 306
            R RLKE+L++RLIECGWRD+LKA+CKEV+K KGLE ITV++LV EITP+GRA VPD++K +LL+RIR FLA
Sbjct:   28 RERLKELLRTRLIECGWRDQLKAHCKEVVKEKGLEHITVDDLVQEITPKGRALVPDDVKKELLQRIRTFLA 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig119315.3982.1 vs. uniprot
Match: UPI001425B3BF (transcription and mRNA export factor ENY2-like isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425B3BF)

HSP 1 Score: 110 bits (276), Expect = 4.370e-29
Identity = 50/71 (70.42%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:   94 RSRLKEMLKSRLIECGWRDELKAYCKEVIKSKGLEKITVEELVSEITPRGRATVPDEIKADLLKRIRQFLA 306
            + RLKE+L+++LIECGWRDELKAYCKEV+++KGLE +TV++LV+EITP+GR  VPDE+K DLL+RIR FLA
Sbjct:   66 KERLKELLRTKLIECGWRDELKAYCKEVVRTKGLEHVTVDDLVAEITPKGRELVPDEVKKDLLQRIRAFLA 136
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BLAST of mRNA_M-pyrifera_M_contig119315.3982.1 vs. uniprot
Match: A0A8J1USV3_OWEFU (Transcription and mRNA export factor ENY2 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1USV3_OWEFU)

HSP 1 Score: 107 bits (268), Expect = 2.270e-28
Identity = 49/71 (69.01%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:   94 RSRLKEMLKSRLIECGWRDELKAYCKEVIKSKGLEKITVEELVSEITPRGRATVPDEIKADLLKRIRQFLA 306
            R RLKE+L++RLIECGWRD+LKA+CKEV++ KGLE +TV++LVSEITP+GRA VPD +K +LL+RIR FL+
Sbjct:   26 RERLKELLRTRLIECGWRDQLKAHCKEVVRQKGLEHVTVDDLVSEITPKGRALVPDTVKKELLQRIRTFLS 96
[Close]
BLAST of mRNA_M-pyrifera_M_contig119315.3982.1 vs. uniprot
Match: A0A2T7NJV8_POMCA (Transcription and mRNA export factor ENY2 n=5 Tax=Gastropoda TaxID=6448 RepID=A0A2T7NJV8_POMCA)

HSP 1 Score: 106 bits (265), Expect = 4.740e-28
Identity = 48/71 (67.61%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:   94 RSRLKEMLKSRLIECGWRDELKAYCKEVIKSKGLEKITVEELVSEITPRGRATVPDEIKADLLKRIRQFLA 306
            R RLKE+L++RLIECGWRD+LK +CKE++++KGLE ITV++LV+EITP+GRA VPD +K +LL+RIR FLA
Sbjct:   15 RERLKELLRTRLIECGWRDQLKTHCKEIVQNKGLEHITVDDLVAEITPKGRALVPDNVKKELLQRIRTFLA 85
[Close]
BLAST of mRNA_M-pyrifera_M_contig119315.3982.1 vs. uniprot
Match: S4RIM2_PETMA (Transcription and mRNA export factor ENY2 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RIM2_PETMA)

HSP 1 Score: 107 bits (266), Expect = 4.990e-28
Identity = 48/71 (67.61%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:   94 RSRLKEMLKSRLIECGWRDELKAYCKEVIKSKGLEKITVEELVSEITPRGRATVPDEIKADLLKRIRQFLA 306
            R RLKE+LK+RL+ECGW+D+L+A+CK+VI+ KGLE +TVE+L+SEITP+GRA VPD +K +LL+RIR FLA
Sbjct:   29 RERLKELLKTRLMECGWKDQLRAHCKDVIRDKGLEHVTVEDLISEITPKGRALVPDNVKKELLQRIRAFLA 99
[Close]
BLAST of mRNA_M-pyrifera_M_contig119315.3982.1 vs. uniprot
Match: UPI00109F5E3A (transcription and mRNA export factor ENY2 n=1 Tax=Podarcis muralis TaxID=64176 RepID=UPI00109F5E3A)

HSP 1 Score: 106 bits (264), Expect = 7.990e-28
Identity = 48/71 (67.61%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:   94 RSRLKEMLKSRLIECGWRDELKAYCKEVIKSKGLEKITVEELVSEITPRGRATVPDEIKADLLKRIRQFLA 306
            R RLKE+L+++LIECGW+D+LKA+CK+VIK KGLE +TV++LV+EITP+GRA VPD +K +LL+RIR FLA
Sbjct:   21 RERLKELLRAKLIECGWKDQLKAHCKDVIKDKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLA 91
[Close]
BLAST of mRNA_M-pyrifera_M_contig119315.3982.1 vs. uniprot
Match: A0A7J7IXY4_BUGNE (Transcription and mRNA export factor ENY2 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7IXY4_BUGNE)

HSP 1 Score: 105 bits (262), Expect = 1.320e-27
Identity = 48/69 (69.57%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:  100 RLKEMLKSRLIECGWRDELKAYCKEVIKSKGLEKITVEELVSEITPRGRATVPDEIKADLLKRIRQFLA 306
            RLK++L++RLIECGWRDELKA+CKE++K KGLE +TVE+LV+E TP+GRA VPD++K +LL RIR FLA
Sbjct:   17 RLKDILRTRLIECGWRDELKAHCKEIVKRKGLEHVTVEDLVAETTPKGRALVPDDVKKELLGRIRTFLA 85
[Close]
BLAST of mRNA_M-pyrifera_M_contig119315.3982.1 vs. uniprot
Match: UPI0006B0F243 (transcription and mRNA export factor ENY2-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0F243)

HSP 1 Score: 105 bits (262), Expect = 1.360e-27
Identity = 45/71 (63.38%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:   94 RSRLKEMLKSRLIECGWRDELKAYCKEVIKSKGLEKITVEELVSEITPRGRATVPDEIKADLLKRIRQFLA 306
            R RL+E+L++RLIECGW+D++KAYCK+++K KG+E +TV++LV+EITP+GRA VPD +K +LL+RIR FLA
Sbjct:   15 RERLRELLRTRLIECGWKDQMKAYCKDIVKEKGVENVTVDDLVAEITPKGRALVPDAVKRELLQRIRTFLA 85
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119315.3982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2C9M5V1_BIOGL1.790e-3074.65Transcription and mRNA export factor ENY2 n=3 Tax=... [more]
A0A1S3IAJ2_LINUN1.460e-2973.24Transcription and mRNA export factor ENY2 n=1 Tax=... [more]
A0A210QN45_MIZYE2.950e-2971.83Transcription and mRNA export factor ENY2 n=2 Tax=... [more]
UPI001425B3BF4.370e-2970.42transcription and mRNA export factor ENY2-like iso... [more]
A0A8J1USV3_OWEFU2.270e-2869.01Transcription and mRNA export factor ENY2 n=1 Tax=... [more]
A0A2T7NJV8_POMCA4.740e-2867.61Transcription and mRNA export factor ENY2 n=5 Tax=... [more]
S4RIM2_PETMA4.990e-2867.61Transcription and mRNA export factor ENY2 n=1 Tax=... [more]
UPI00109F5E3A7.990e-2867.61transcription and mRNA export factor ENY2 n=1 Tax=... [more]
A0A7J7IXY4_BUGNE1.320e-2769.57Transcription and mRNA export factor ENY2 n=1 Tax=... [more]
UPI0006B0F2431.360e-2763.38transcription and mRNA export factor ENY2-like n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119315contigM-pyrifera_M_contig119315:18..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score105.5
Seed ortholog evalue1.5e-20
Seed eggNOG ortholog482537.XP_008582113.1
Preferred nameENY2
KEGG koko:K11368
Hectar predicted targeting categoryother localisation
EggNOG free text desc.poly(A) mRNA export from nucleus
EggNOG OGs35Q90@314146,3A3ME@33154,3BRDV@33208,3D7KG@33213,3JGXG@40674,48EPW@7711,49BIA@7742,KOG4479@1,KOG4479@2759
COG Functional cat.K
Best tax levelEuarchontoglires
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03021,ko03036
Exons3
Model size315
Cds size315
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119315.3982.1prot_M-pyrifera_M_contig119315.3982.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119315 18..472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.965119-CDS-M-pyrifera_M_contig119315:17..1891622815712.965119-CDS-M-pyrifera_M_contig119315:17..189Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119315 18..189 +
1692277534.4115257-CDS-M-pyrifera_M_contig119315:17..1891692277534.4115257-CDS-M-pyrifera_M_contig119315:17..189Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119315 18..189 +
1622815712.978147-CDS-M-pyrifera_M_contig119315:261..3361622815712.978147-CDS-M-pyrifera_M_contig119315:261..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119315 262..336 +
1692277534.422224-CDS-M-pyrifera_M_contig119315:261..3361692277534.422224-CDS-M-pyrifera_M_contig119315:261..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119315 262..336 +
1622815712.9950335-CDS-M-pyrifera_M_contig119315:404..4721622815712.9950335-CDS-M-pyrifera_M_contig119315:404..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119315 405..472 +
1692277534.4311745-CDS-M-pyrifera_M_contig119315:404..4721692277534.4311745-CDS-M-pyrifera_M_contig119315:404..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119315 405..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119315.3982.1

>prot_M-pyrifera_M_contig119315.3982.1 ID=prot_M-pyrifera_M_contig119315.3982.1|Name=mRNA_M-pyrifera_M_contig119315.3982.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
ACRDGREGEVRCARVCRWLRRCGALNSRRSARSRLKEMLKSRLIECGWRD
ELKAYCKEVIKSKGLEKITVEELVSEITPRGRATVPDEIKADLLKRIRQF
LAAS*
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mRNA from alignment at M-pyrifera_M_contig119315:18..472+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119315.3982.1 ID=mRNA_M-pyrifera_M_contig119315.3982.1|Name=mRNA_M-pyrifera_M_contig119315.3982.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=455bp|location=Sequence derived from alignment at M-pyrifera_M_contig119315:18..472+ (Macrocystis pyrifera P11B4 male)
GCTTGTAGAGACGGGAGAGAAGGAGAGGTGCGGTGCGCCCGTGTCTGCCG
TTGGCTGCGCCGGTGTGGCGCGCTAAACTCACGCCGTTCTGCCCGTTCCA
GGCTAAAGGAGATGCTGAAGAGCAGATTGATCGAGTGTGGCTGGCGTGAC
GAGCTCAAGGCGTACTGCAAGGGTACGCACGCGTGAGCGCGCGCTGTGAC
GGCCTGTGTTTGGCGCTGACTGGCGTATTTTCGGGTGTGTGCAGAGGTGA
TCAAGAGCAAGGGTCTGGAGAAGATCACTGTGGAGGAGCTGGTGTCTGAA
ATCACGCCACGCGGAAGAGGTGCGCTGCCCCGCGAAGCGTCGCGCTGCCC
CGTGGCTGAGCAGCATCGCTGACCCGATGCGTCGCAGCGACTGTTCCGGA
CGAGATCAAAGCAGACTTGCTCAAGCGCATCCGCCAGTTCCTTGCCGCCA
GCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119315:18..472+

>mRNA_M-pyrifera_M_contig119315.3982.1 ID=mRNA_M-pyrifera_M_contig119315.3982.1|Name=mRNA_M-pyrifera_M_contig119315.3982.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig119315:18..472+ (Macrocystis pyrifera P11B4 male)
GCTTGTAGAGACGGGAGAGAAGGAGAGGTGCGGTGCGCCCGTGTCTGCCG
TTGGCTGCGCCGGTGTGGCGCGCTAAACTCACGCCGTTCTGCCCGTTCCA
GGCTAAAGGAGATGCTGAAGAGCAGATTGATCGAGTGTGGCTGGCGTGAC
GAGCTCAAGGCGTACTGCAAGGGCTTGTAGAGACGGGAGAGAAGGAGAGG
TGCGGTGCGCCCGTGTCTGCCGTTGGCTGCGCCGGTGTGGCGCGCTAAAC
TCACGCCGTTCTGCCCGTTCCAGGCTAAAGGAGATGCTGAAGAGCAGATT
GATCGAGTGTGGCTGGCGTGACGAGCTCAAGGCGTACTGCAAGGAGGTGA
TCAAGAGCAAGGGTCTGGAGAAGATCACTGTGGAGGAGCTGGTGTCTGAA
ATCACGCCACGCGGAAGAGAGGTGATCAAGAGCAAGGGTCTGGAGAAGAT
CACTGTGGAGGAGCTGGTGTCTGAAATCACGCCACGCGGAAGAGCGACTG
TTCCGGACGAGATCAAAGCAGACTTGCTCAAGCGCATCCGCCAGTTCCTT
GCCGCCAGCTGACGACTGTTCCGGACGAGATCAAAGCAGACTTGCTCAAG
CGCATCCGCCAGTTCCTTGCCGCCAGCTGA
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