mRNA_M-pyrifera_M_contig119286.3969.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119286.3969.1
Unique NamemRNA_M-pyrifera_M_contig119286.3969.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig119286.3969.1 vs. uniprot
Match: A0A2I4F2N0_JUGRE (proteasome activator subunit 4-like isoform X4 n=2 Tax=Juglans regia TaxID=51240 RepID=A0A2I4F2N0_JUGRE)

HSP 1 Score: 61.6 bits (148), Expect = 7.120e-9
Identity = 33/98 (33.67%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    1 LPVGSVAYPMAYQLGLPSECGVFFPSSDHVTTCMRAIARFIVFMMTPGSAALPGLAEMLSYIEPYYHPSNFGGWSVRLAQFARSLCSSFARRVAAERK 294
            +PV + +    + L +P      F  S+   + ++AIA+ IV+++ P SAAL  L ++++ +E YYHPSN G W+  LA F   L   F +R+  E++
Sbjct:  257 VPVANRSESHPFPLDVPKNIRFLF--SNSTVSLVKAIAKSIVYLLKPHSAALAHLEKIINLLEQYYHPSNGGSWTYSLACFLIHLVIQFQKRLKYEQQ 352
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BLAST of mRNA_M-pyrifera_M_contig119286.3969.1 vs. uniprot
Match: A0A6P9F1G0_JUGRE (proteasome activator subunit 4-like isoform X1 n=16 Tax=Juglandaceae TaxID=16714 RepID=A0A6P9F1G0_JUGRE)

HSP 1 Score: 61.6 bits (148), Expect = 7.160e-9
Identity = 33/98 (33.67%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    1 LPVGSVAYPMAYQLGLPSECGVFFPSSDHVTTCMRAIARFIVFMMTPGSAALPGLAEMLSYIEPYYHPSNFGGWSVRLAQFARSLCSSFARRVAAERK 294
            +PV + +    + L +P      F  S+   + ++AIA+ IV+++ P SAAL  L ++++ +E YYHPSN G W+  LA F   L   F +R+  E++
Sbjct:  257 VPVANRSESHPFPLDVPKNIRFLF--SNSTVSLVKAIAKSIVYLLKPHSAALAHLEKIINLLEQYYHPSNGGSWTYSLACFLIHLVIQFQKRLKYEQQ 352
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BLAST of mRNA_M-pyrifera_M_contig119286.3969.1 vs. uniprot
Match: A0A6V7P3W6_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7P3W6_ANACO)

HSP 1 Score: 56.2 bits (134), Expect = 5.560e-7
Identity = 33/95 (34.74%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:   10 GSVAYPMAYQLGLPSECGVFFPSSDHVTTCMRAIARFIVFMMTPGSAALPGLAEMLSYIEPYYHPSNFGGWSVRLAQFARSLCSSFARRVAAERK 294
            G  +YP  + +G+P      F S     T  +AIA+ IV+++ P SAA      +   +E YYHPSN G W+  L +F R L   F +R+  E++
Sbjct:  271 GRGSYP--FPMGVPRNTRFLFSSKSG--TPSKAIAKSIVYLLKPRSAAQEYFERLADLLEQYYHPSNGGRWTHSLERFLRYLVVYFQKRLQNEQR 361
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BLAST of mRNA_M-pyrifera_M_contig119286.3969.1 vs. uniprot
Match: A0A6P5GQJ8_ANACO (proteasome activator subunit 4 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GQJ8_ANACO)

HSP 1 Score: 56.2 bits (134), Expect = 5.600e-7
Identity = 33/95 (34.74%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:   10 GSVAYPMAYQLGLPSECGVFFPSSDHVTTCMRAIARFIVFMMTPGSAALPGLAEMLSYIEPYYHPSNFGGWSVRLAQFARSLCSSFARRVAAERK 294
            G  +YP  + +G+P      F S     T  +AIA+ IV+++ P SAA      +   +E YYHPSN G W+  L +F R L   F +R+  E++
Sbjct:  143 GRGSYP--FPMGVPRNTRFLFSSKSG--TPSKAIAKSIVYLLKPRSAAQEYFERLADLLEQYYHPSNGGRWTHSLERFLRYLVVYFQKRLQNEQR 233
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BLAST of mRNA_M-pyrifera_M_contig119286.3969.1 vs. uniprot
Match: UPI001924044C (proteasome activator subunit 4-like n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI001924044C)

HSP 1 Score: 56.2 bits (134), Expect = 5.620e-7
Identity = 31/95 (32.63%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:   13 SVAYPMAYQLGLPSECGVFFPSSDHVTTCMRAIARFIVFMMTPGSAALPGLAEMLSYIEPYYHPSNFGGWSVRLAQFARSLCSSFARRVAAERKL 297
            S +YP  + + +P      F  S+      RAIA+ +V+++ P SAA     ++++ +E YYHPSN G W+  L +F   L  +F +R+  E++L
Sbjct:  320 SGSYP--FSVDVPRNTRFLF--SNKTVNPARAIAKSVVYLLKPSSAAQEHFEKLVNLLEQYYHPSNGGRWTYSLERFLLYLVITFQKRLQHEQQL 410
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BLAST of mRNA_M-pyrifera_M_contig119286.3969.1 vs. uniprot
Match: F4R6R7_MELLP (Uncharacterized protein (Fragment) n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4R6R7_MELLP)

HSP 1 Score: 52.0 bits (123), Expect = 1.730e-5
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:  100 MRAIARFIVFMM-------TPGSAALPGLAEMLSYIEPYYHPSNFGGWSVRLAQFARSLCSSFARRVAAERK 294
            + ++A  IV+ M       TP   AL   A++L+ +E ++HPSN G WS +LA+F R L   F RR   E K
Sbjct:  360 LESLATIIVYSMSENSTSDTPHCRALHATAKLLTSMETFFHPSNHGDWSSKLAKFVRHLAWQFTRRWTEEAK 431
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BLAST of mRNA_M-pyrifera_M_contig119286.3969.1 vs. uniprot
Match: A0A0L0VTP5_9BASI (Uncharacterized protein n=4 Tax=Puccinia striiformis TaxID=27350 RepID=A0A0L0VTP5_9BASI)

HSP 1 Score: 51.2 bits (121), Expect = 3.230e-5
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:  100 MRAIARFIVFMMTPGSA-----ALPGLAEMLSYIEPYYHPSNFGGWSVRLAQFARSLCSSFARRVAAERKL 297
            +++ A  IV  MT         AL  L+++L+ +E ++HPSN+G WS +LA+F   L   FARR  +E K+
Sbjct:  385 LKSFAIIIVASMTEDHESGDCRALTSLSKLLTAMETFFHPSNYGRWSSKLAKFLNYLAKQFARRWVSESKI 455
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BLAST of mRNA_M-pyrifera_M_contig119286.3969.1 vs. uniprot
Match: A0A5B0Q5S2_PUCGR (BLM10_mid domain-containing protein n=2 Tax=Puccinia graminis f. sp. tritici TaxID=56615 RepID=A0A5B0Q5S2_PUCGR)

HSP 1 Score: 50.4 bits (119), Expect = 5.860e-5
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:  100 MRAIARFIVFMMT--PGSA---ALPGLAEMLSYIEPYYHPSNFGGWSVRLAQFARSLCSSFARRVAAE 288
            +++ A  IV  MT  P S    AL  L+ +L+ +E ++HPSN+G WS +LA+F   L   FARR  +E
Sbjct:  367 LKSFAIIIVTSMTEDPKSGECRALTSLSRLLTAMETFFHPSNYGRWSAKLAKFLNYLAKQFARRWTSE 434
[Close]
BLAST of mRNA_M-pyrifera_M_contig119286.3969.1 vs. uniprot
Match: E3KY86_PUCGT (Uncharacterized protein n=2 Tax=Puccinia graminis f. sp. tritici TaxID=56615 RepID=E3KY86_PUCGT)

HSP 1 Score: 50.4 bits (119), Expect = 6.020e-5
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:  100 MRAIARFIVFMMT--PGSA---ALPGLAEMLSYIEPYYHPSNFGGWSVRLAQFARSLCSSFARRVAAE 288
            +++ A  IV  MT  P S    AL  L+ +L+ +E ++HPSN+G WS +LA+F   L   FARR  +E
Sbjct:  367 LKSFAIIIVTSMTEDPKSGECRALTSLSRLLTAMETFFHPSNYGRWSAKLAKFLNYLAKQFARRWTSE 434
[Close]
BLAST of mRNA_M-pyrifera_M_contig119286.3969.1 vs. uniprot
Match: A0A2S4UL72_9BASI (BLM10_mid domain-containing protein (Fragment) n=1 Tax=Puccinia striiformis TaxID=27350 RepID=A0A2S4UL72_9BASI)

HSP 1 Score: 50.1 bits (118), Expect = 7.720e-5
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  151 ALPGLAEMLSYIEPYYHPSNFGGWSVRLAQFARSLCSSFARRVAAERKL 297
            AL  L+++L+ +E ++HPSN+G WS +LA+F   L   FARR  +E K+
Sbjct:  509 ALTSLSKLLTAMETFFHPSNYGRWSSKLAKFLNYLAKQFARRWVSESKI 557
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119286.3969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A2I4F2N0_JUGRE7.120e-933.67proteasome activator subunit 4-like isoform X4 n=2... [more]
A0A6P9F1G0_JUGRE7.160e-933.67proteasome activator subunit 4-like isoform X1 n=1... [more]
A0A6V7P3W6_ANACO5.560e-734.74Uncharacterized protein n=1 Tax=Ananas comosus var... [more]
A0A6P5GQJ8_ANACO5.600e-734.74proteasome activator subunit 4 n=2 Tax=Ananas como... [more]
UPI001924044C5.620e-732.63proteasome activator subunit 4-like n=2 Tax=Hibisc... [more]
F4R6R7_MELLP1.730e-538.89Uncharacterized protein (Fragment) n=1 Tax=Melamps... [more]
A0A0L0VTP5_9BASI3.230e-538.03Uncharacterized protein n=4 Tax=Puccinia striiform... [more]
A0A5B0Q5S2_PUCGR5.860e-541.18BLM10_mid domain-containing protein n=2 Tax=Puccin... [more]
E3KY86_PUCGT6.020e-541.18Uncharacterized protein n=2 Tax=Puccinia graminis ... [more]
A0A2S4UL72_9BASI7.720e-544.90BLM10_mid domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119286contigM-pyrifera_M_contig119286:110..415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.0
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog3659.XP_004171223.1
KEGG koko:K06699
KEGG Pathwayko03050,map03050
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005839,GO:0006508,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010498,GO:0010499,GO:0010604,GO:0010952,GO:0016504,GO:0019222,GO:0019538,GO:0030162,GO:0030163,GO:0030234,GO:0031323,GO:0031325,GO:0032268,GO:0032270,GO:0032991,GO:0042393,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045862,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0052547,GO:0060255,GO:0061134,GO:0065007,GO:0065009,GO:0070577,GO:0070628,GO:0071704,GO:0080090,GO:0098772,GO:0140030,GO:0140033,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.Proteasome activator subunit
EggNOG OGs37PGX@33090,3GB3P@35493,4JG30@91835,KOG1851@1,KOG1851@2759
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051
Exons1
Model size306
Cds size279
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.0388157-UTR-M-pyrifera_M_contig119286:109..1361622815712.0388157-UTR-M-pyrifera_M_contig119286:109..136Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119286 110..136 +
1692277533.9986455-UTR-M-pyrifera_M_contig119286:109..1361692277533.9986455-UTR-M-pyrifera_M_contig119286:109..136Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig119286 110..136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815712.048469-CDS-M-pyrifera_M_contig119286:136..4151622815712.048469-CDS-M-pyrifera_M_contig119286:136..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119286 137..415 +
1692277534.009128-CDS-M-pyrifera_M_contig119286:136..4151692277534.009128-CDS-M-pyrifera_M_contig119286:136..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119286 137..415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119286.3969.1prot_M-pyrifera_M_contig119286.3969.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119286 137..415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119286.3969.1

>prot_M-pyrifera_M_contig119286.3969.1 ID=prot_M-pyrifera_M_contig119286.3969.1|Name=mRNA_M-pyrifera_M_contig119286.3969.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
MAYQLGLPSECGVFFPSSDHVTTCMRAIARFIVFMMTPGSAALPGLAEML
SYIEPYYHPSNFGGWSVRLAQFARSLCSSFARRVAAERKLRNR
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mRNA from alignment at M-pyrifera_M_contig119286:110..415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119286.3969.1 ID=mRNA_M-pyrifera_M_contig119286.3969.1|Name=mRNA_M-pyrifera_M_contig119286.3969.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig119286:110..415+ (Macrocystis pyrifera P11B4 male)
CTGCCTGTTGGCTCGGTTGCATACCCTATGGCCTATCAACTCGGACTTCC
CAGTGAGTGCGGTGTGTTCTTCCCATCGAGTGACCATGTAACAACGTGTA
TGAGGGCTATCGCTCGATTCATTGTGTTCATGATGACGCCTGGCTCTGCC
GCATTGCCCGGTTTGGCAGAGATGCTCTCCTACATCGAGCCGTACTATCA
CCCTTCCAACTTCGGTGGCTGGAGTGTCAGGTTGGCTCAGTTCGCCCGTT
CATTGTGCTCATCCTTTGCGAGAAGGGTGGCAGCCGAGAGGAAGCTGCGC
AACCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119286:110..415+

>mRNA_M-pyrifera_M_contig119286.3969.1 ID=mRNA_M-pyrifera_M_contig119286.3969.1|Name=mRNA_M-pyrifera_M_contig119286.3969.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig119286:110..415+ (Macrocystis pyrifera P11B4 male)
ATGGCCTATCAACTCGGACTTCCCAGTGAGTGCGGTGTGTTCTTCCCATC
GAGTGACCATGTAACAACGTGTATGAGGGCTATCGCTCGATTCATTGTGT
TCATGATGACGCCTGGCTCTGCCGCATTGCCCGGTTTGGCAGAGATGCTC
TCCTACATCGAGCCGTACTATCACCCTTCCAACTTCGGTGGCTGGAGTGT
CAGGTTGGCTCAGTTCGCCCGTTCATTGTGCTCATCCTTTGCGAGAAGGG
TGGCAGCCGAGAGGAAGCTGCGCAACCGCATGGCCTATCAACTCGGACTT
CCCAGTGAGTGCGGTGTGTTCTTCCCATCGAGTGACCATGTAACAACGTG
TATGAGGGCTATCGCTCGATTCATTGTGTTCATGATGACGCCTGGCTCTG
CCGCATTGCCCGGTTTGGCAGAGATGCTCTCCTACATCGAGCCGTACTAT
CACCCTTCCAACTTCGGTGGCTGGAGTGTCAGGTTGGCTCAGTTCGCCCG
TTCATTGTGCTCATCCTTTGCGAGAAGGGTGGCAGCCGAGAGGAAGCTGC
GCAACCGC
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