mRNA_M-pyrifera_M_contig119161.3945.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119161.3945.1
Unique NamemRNA_M-pyrifera_M_contig119161.3945.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119161.3945.1 vs. uniprot
Match: A0A7S1CAN4_9STRA (Phosphatidate cytidylyltransferase, mitochondrial (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAN4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.010e-12
Identity = 32/51 (62.75%), Postives = 35/51 (68.63%), Query Frame = 1
Query:   31 PPVNVALAYGSGVFSQPGYN-AYPPPMLDMIFGVEDAGAWHRENFQRNRSH 180
            P V  A AYGSGVF Q GY+    PPMLD+IF V+DA AWH EN  RNR H
Sbjct:    7 PDVRYAFAYGSGVFDQEGYDPTAAPPMLDLIFAVDDAEAWHAENLARNRDH 57          
BLAST of mRNA_M-pyrifera_M_contig119161.3945.1 vs. uniprot
Match: A0A7S0P3W5_9EUKA (Phosphatidate cytidylyltransferase, mitochondrial (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P3W5_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 1.430e-10
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   10 ESLLSHFPPVNVALAYGSGVFSQPGYNAYP--PPMLDMIFGVEDAGAWHRENFQRNRSH 180
            E LLSHFPPV  A AYGS V+ Q GY+A      M+D++F V++   WH  N +RN SH
Sbjct:    8 EELLSHFPPVAFAFAYGSAVYVQRGYSAQQLANAMIDLVFAVDEPLLWHAYNLERNSSH 66          
BLAST of mRNA_M-pyrifera_M_contig119161.3945.1 vs. uniprot
Match: B6K4K1_SCHJY (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K4K1_SCHJY)

HSP 1 Score: 64.3 bits (155), Expect = 1.460e-10
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   34 PVNVALAYGSGVFSQPGYNAYPPPMLDMIFGVEDAGAWHRENFQRNRSH 180
            P++VA+AYGSGVFSQ GY+    PMLD IFGV+D   WH  N ++N  H
Sbjct:   62 PIDVAIAYGSGVFSQKGYDKKKKPMLDFIFGVKDPYQWHSVNVKQNPKH 110          
BLAST of mRNA_M-pyrifera_M_contig119161.3945.1 vs. uniprot
Match: A0A433CY91_9FUNG (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433CY91_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 5.310e-10
Identity = 28/49 (57.14%), Postives = 30/49 (61.22%), Query Frame = 1
Query:   34 PVNVALAYGSGVFSQPGYNAYPPPMLDMIFGVEDAGAWHRENFQRNRSH 180
            PV  A+AYGSGVF Q GY    PPM D IFGV     WH  N Q NR+H
Sbjct:  111 PVRYAIAYGSGVFQQRGYETKKPPMTDFIFGVSHPQHWHSLNLQHNRAH 159          
BLAST of mRNA_M-pyrifera_M_contig119161.3945.1 vs. uniprot
Match: A0A7R9YWQ8_9CHLO (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YWQ8_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 5.860e-10
Identity = 30/57 (52.63%), Postives = 34/57 (59.65%), Query Frame = 1
Query:   25 HFPPVNVALAYGSGVFSQPGY-----NAYPPPMLDMIFGVEDAGAWHRENFQRNRSH 180
            HFPPV  A AYGSGV  QPG      +    PM+DMIF VE A  WH++N   N SH
Sbjct:   27 HFPPVAFAFAYGSGVMHQPGLYTSGSSGDGQPMVDMIFAVEGAREWHKQNMGHNASH 83          
BLAST of mRNA_M-pyrifera_M_contig119161.3945.1 vs. uniprot
Match: I7M213_TETTS (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M213_TETTS)

HSP 1 Score: 62.4 bits (150), Expect = 6.590e-10
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    7 DESLLSHFPPVNVALAYGSGVFSQPGYN-AYPPPMLDMIFGVEDAGAWHRENFQRNRSH 180
            D  +   FP ++ A  YGSGVF Q GY+ +   PM+D+IFGV+DA  WHR N  +N SH
Sbjct:   18 DSIIQRDFPKIDFAFGYGSGVFRQIGYDYSKDSPMIDLIFGVQDADEWHRMNLIKNPSH 76          
BLAST of mRNA_M-pyrifera_M_contig119161.3945.1 vs. uniprot
Match: A0A6S7GSI8_PARCT (Phosphatidate cytidylyltransferase, mitochondrial n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GSI8_PARCT)

HSP 1 Score: 62.0 bits (149), Expect = 8.800e-10
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 MDDESLLSHFPPVNVALAYGSGVFSQPGYNAYPPPMLDMIFGVEDAGAWHRENFQRNRSH 180
            M  E LLS FP V +A AYGS VF+Q GY      MLD +F V+DA AWH+ N + N SH
Sbjct:    1 MATEKLLSDFPKVTMAFAYGSAVFTQEGYADTNKNMLDAMFVVDDALAWHKLNVKVNGSH 60          
BLAST of mRNA_M-pyrifera_M_contig119161.3945.1 vs. uniprot
Match: C3ZAA9_BRAFL (Phosphatidate cytidylyltransferase, mitochondrial n=4 Tax=Branchiostoma TaxID=7737 RepID=C3ZAA9_BRAFL)

HSP 1 Score: 62.0 bits (149), Expect = 8.820e-10
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   16 LLSHFPPVNVALA--YGSGVFSQPGYNAYPPPMLDMIFGVEDAGAWHRENFQRNRSH 180
            ++S+FP   +A A  YGSGVF Q G+ A    M+D IF V++A AWH+EN +RNR H
Sbjct:    8 IVSNFPQEGLAFAFAYGSGVFHQRGHKAMSQNMVDFIFAVDNAEAWHKENMRRNRKH 64          
BLAST of mRNA_M-pyrifera_M_contig119161.3945.1 vs. uniprot
Match: A0A1V9ZW48_9STRA (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZW48_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.550e-9
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   10 ESLLSHFPPVNVALAYGSGVFSQPGYNAYPPPMLDMIFGVEDAGAWHRENFQRNRSH 180
            ++LL+HFPPV+ A+ YGSGVF Q G+++    M+D++  VED  AWH E   R+  H
Sbjct:    4 KTLLTHFPPVDFAMGYGSGVFKQSGHDS-STSMVDLVLAVEDPLAWHTEQIARHPEH 59          
BLAST of mRNA_M-pyrifera_M_contig119161.3945.1 vs. uniprot
Match: A0A8H7UXR6_9FUNG (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7UXR6_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 3.450e-9
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   10 ESLLSHF-PPVNVALAYGSGVFSQPGYNAYPPPMLDMIFGVEDAGAWHRENFQRNRSH 180
            ++++S F  PV  A+AYGSGVF Q GY+    PM+D IFGV   G WH  N Q+N  H
Sbjct:  101 KNVVSQFNAPVRYAVAYGSGVFHQSGYDEKKKPMVDFIFGVSHPGHWHALNIQQNPHH 158          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119161.3945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CAN4_9STRA1.010e-1262.75Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A7S0P3W5_9EUKA1.430e-1050.85Phosphatidate cytidylyltransferase, mitochondrial ... [more]
B6K4K1_SCHJY1.460e-1057.14Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A433CY91_9FUNG5.310e-1057.14Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A7R9YWQ8_9CHLO5.860e-1052.63Phosphatidate cytidylyltransferase, mitochondrial ... [more]
I7M213_TETTS6.590e-1049.15Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A6S7GSI8_PARCT8.800e-1053.33Phosphatidate cytidylyltransferase, mitochondrial ... [more]
C3ZAA9_BRAFL8.820e-1050.88Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A1V9ZW48_9STRA1.550e-947.37Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A8H7UXR6_9FUNG3.450e-950.00Phosphatidate cytidylyltransferase, mitochondrial ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119161contigM-pyrifera_M_contig119161:20..280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog2880.D7FQS1
Preferred nameTAMM41
KEGG koko:K17807,ko:K21121
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0019637,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032048,GO:0032049,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0061024,GO:0070013,GO:0070567,GO:0071704,GO:0071840,GO:0090407,GO:1901576
EggNOG free text desc.phosphatidate cytidylyltransferase activity
EggNOG OGsKOG2986@1,KOG2986@2759
EC2.3.1.259
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03036
Exons2
Model size183
Cds size183
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.9514048-CDS-M-pyrifera_M_contig119161:19..1141622815710.9514048-CDS-M-pyrifera_M_contig119161:19..114Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119161 20..114 -
1692277533.4926531-CDS-M-pyrifera_M_contig119161:19..1141692277533.4926531-CDS-M-pyrifera_M_contig119161:19..114Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119161 20..114 -
1622815710.964761-CDS-M-pyrifera_M_contig119161:192..2801622815710.964761-CDS-M-pyrifera_M_contig119161:192..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119161 193..280 -
1692277533.506003-CDS-M-pyrifera_M_contig119161:192..2801692277533.506003-CDS-M-pyrifera_M_contig119161:192..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119161 193..280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119161.3945.1prot_M-pyrifera_M_contig119161.3945.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119161 20..280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119161.3945.1

>prot_M-pyrifera_M_contig119161.3945.1 ID=prot_M-pyrifera_M_contig119161.3945.1|Name=mRNA_M-pyrifera_M_contig119161.3945.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MDDESLLSHFPPVNVALAYGSGVFSQPGYNAYPPPMLDMIFGVEDAGAWH
RENFQRNRSH*
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mRNA from alignment at M-pyrifera_M_contig119161:20..280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119161.3945.1 ID=mRNA_M-pyrifera_M_contig119161.3945.1|Name=mRNA_M-pyrifera_M_contig119161.3945.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig119161:20..280- (Macrocystis pyrifera P11B4 male)
ATGGACGACGAATCCCTTCTTTCTCACTTTCCACCAGTAAATGTTGCACT GGCGTATGGGTCTGGTGTGTTTTCTCAGCCAGGATATAGTAAGAAACAGC TTTCCCCCTATTTCCTTTGCCATTCTTCACGAAACACGTACCTTTTTGTT ATTTTTCTTCTGTCAGATGCATACCCACCTCCAATGCTTGATATGATATT TGGAGTGGAGGACGCTGGAGCATGGCATCGTGAGAATTTTCAAAGAAATC GCTCTCACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119161:20..280-

>mRNA_M-pyrifera_M_contig119161.3945.1 ID=mRNA_M-pyrifera_M_contig119161.3945.1|Name=mRNA_M-pyrifera_M_contig119161.3945.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig119161:20..280- (Macrocystis pyrifera P11B4 male)
ATGGACGACGAATCCCTTCTTTCTCACTTTCCACCAGTAAATGTTGCACT
GGCGTATGGGTCTGGTGTGTTTTCTCAGCCAGGATATAATGGACGACGAA
TCCCTTCTTTCTCACTTTCCACCAGTAAATGTTGCACTGGCGTATGGGTC
TGGTGTGTTTTCTCAGCCAGGATATAATGCATACCCACCTCCAATGCTTG
ATATGATATTTGGAGTGGAGGACGCTGGAGCATGGCATCGTGAGAATTTT
CAAAGAAATCGCTCTCACTAAATGCATACCCACCTCCAATGCTTGATATG
ATATTTGGAGTGGAGGACGCTGGAGCATGGCATCGTGAGAATTTTCAAAG
AAATCGCTCTCACTAA
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