mRNA_M-pyrifera_M_contig119083.3915.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: A0A0F7SN91_PHARH (RNA polymerase II subunit A C-terminal domain phosphatase n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SN91_PHARH) HSP 1 Score: 80.1 bits (196), Expect = 3.530e-15 Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 1
Query: 7 PDCRVLLSRKRYAVLRGCRIVFSGVFPLGVVPEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAK------SNGIHVVHVAWLFASAARFTKLSELGFARLEPA 333
PD + +L + VLRGCRIVFSGV PLG PE + WR+A GA C K GS TH +A GT+KV A ++ IH+V WL S A++T L E + + P+
Sbjct: 523 PDVKPILDYIKRRVLRGCRIVFSGVIPLGTKPELFSLWRLAVQHGAVCEKNLSTGS---THLIARASGTQKVHEASRMDGGGTSRIHIVTPYWLIDSIAQWTHLPEWMYLLIPPS 634
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: A0A804K136_MUSAM (RNA polymerase II C-terminal domain phosphatase-like n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804K136_MUSAM) HSP 1 Score: 76.6 bits (187), Expect = 5.550e-14 Identity = 46/104 (44.23%), Postives = 59/104 (56.73%), Query Frame = 1
Query: 10 DCRVLLSRKRYAVLRGCRIVFSGVFPLGVV-PEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGFA 318
D R LL ++ VLRGCRIVFS VFP+G P+Q W+ A+ GA C Q + V TH +A GT+KV A S G VVH W+ AS + + +E FA
Sbjct: 458 DVRSLLEAEQRKVLRGCRIVFSRVFPVGEANPQQHPLWKKAQQFGAVCTDQ-IDEHV--THVIATALGTDKVQRALSTGKFVVHPGWIEASTLLYRRANEHNFA 558
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: A0A328DHA7_9ASTE (RNA polymerase II C-terminal domain phosphatase-like n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328DHA7_9ASTE) HSP 1 Score: 74.3 bits (181), Expect = 3.480e-13 Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 1
Query: 10 DCRVLLSRKRYAVLRGCRIVFSGVFPLGVVPEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGFARLEP 330
D R +L R VL+GC+IVFS VFP + E+ WRIA LGA C + V SV TH V++ GTEK +A+ N +VH W+ A+ RF + E F + P
Sbjct: 379 DVREVLKGVRKEVLKGCKIVFSRVFPNNIQAEKHHLWRIAEQLGATCSIE-VDESV--THVVSMDAGTEKSRWARQNKKFLVHPKWIEAANYRFERKPEKDFPVVVP 482
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: W1P8K8_AMBTC (Protein-serine/threonine phosphatase n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1P8K8_AMBTC) HSP 1 Score: 74.3 bits (181), Expect = 3.770e-13 Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 10 DCRVLLSRKRYAVLRGCRIVFSGVFPLGVV-PEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGFARLEP 330
D R +L+ ++ +L+GC++VFS VF +G+ P W+ A GA C Q + V TH VA+ GT+KV +A S G +VVH WL ASA + + +E F+ + P
Sbjct: 905 DVRDILASEQQKILKGCKVVFSRVFHVGLANPHLHPLWQTAEQFGAICTNQ-IDDEV--THVVAISLGTDKVNWAISTGRYVVHPGWLEASALLYRRANERDFSIMPP 1009
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: W1PT59_AMBTC (RNA polymerase II C-terminal domain phosphatase-like n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PT59_AMBTC) HSP 1 Score: 73.9 bits (180), Expect = 4.090e-13 Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 10 DCRVLLSRKRYAVLRGCRIVFSGVFP-----LGVVPEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGFARLE 327
D R LL+ ++ +LRGC+++FSG+F L + P W+ A GA C Q + V TH VA GT KV +A SNG VVH WL AS+ + +++EL FAR++
Sbjct: 281 DIRDLLASQQQKILRGCKVLFSGIFQADDMNLNLHPF----WKTAEQFGAICTNQ-IDDQV--THVVARLPGTTKVNWALSNGKFVVHPGWLKASSFLYRRVNELDFARID 384
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: CPL4_ARATH (RNA polymerase II C-terminal domain phosphatase-like 4 n=4 Tax=Arabidopsis thaliana TaxID=3702 RepID=CPL4_ARATH) HSP 1 Score: 73.6 bits (179), Expect = 6.230e-13 Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 1
Query: 10 DCRVLLSRKRYAVLRGCRIVFSGVFPLGVVPEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGF 315
D R++L + R +L+GC+IVFS VFP PE W++A LGA C + V SV TH VA+ GTEK +A +VVH W+ A+ + K E F
Sbjct: 329 DVRLMLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATE-VDASV--THVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEENF 427
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: UPI0009016285 (RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI0009016285) HSP 1 Score: 73.6 bits (179), Expect = 6.580e-13 Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 1 SIPDCRVLLSRKRYAVLRGCRIVFSGVFPLGVVPEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGFA 318
S D R++L + R +L+GC++VFS VFP PE W++A LGA C + V SV TH VA+ GTEK +A VVH W+ A+ + K E F+
Sbjct: 401 SNKDVRLMLKQVRKEILKGCKVVFSRVFPTKAKPEDHPLWKMAEDLGATCATE-VDASV--THVVAMEMGTEKARWAVREKKFVVHRGWIDAANYLWKKQPEENFS 503
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: G7JJ51_MEDTR (Protein-serine/threonine phosphatase n=3 Tax=Medicago truncatula TaxID=3880 RepID=G7JJ51_MEDTR) HSP 1 Score: 73.6 bits (179), Expect = 7.040e-13 Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 10 DCRVLLSRKRYAVLRGCRIVFSGVFPLGVV-PEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGFA 318
D R +L+ ++ +L GCRIVFSGVFP+G P WR A GA+C + V V TH VA GT+KV + SNG VV+ W+ AS + +++E FA
Sbjct: 962 DVRNILASEQRKILGGCRIVFSGVFPVGETNPHLHPLWRTAEQFGASCTNK-VDPQV--THVVAQSPGTDKVNWGISNGKFVVYPNWVEASTLLYRRMNEQDFA 1062
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: A0A7G2FGZ8_ARATH (Reticulon-like protein n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A7G2FGZ8_ARATH) HSP 1 Score: 73.6 bits (179), Expect = 7.050e-13 Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 1
Query: 10 DCRVLLSRKRYAVLRGCRIVFSGVFPLGVVPEQSTEWRIARSLGAACLKQPVQGSVLATHCVALREGTEKVMFAKSNGIHVVHVAWLFASAARFTKLSELGF 315
D R++L + R +L+GC+IVFS VFP PE W++A LGA C + V SV TH VA+ GTEK +A +VVH W+ A+ + K E F
Sbjct: 884 DVRLMLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATE-VDASV--THVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEENF 982
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Match: A0A8B7XND0_ACAPL (RNA polymerase II subunit A C-terminal domain phosphatase n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XND0_ACAPL) HSP 1 Score: 72.8 bits (177), Expect = 1.280e-12 Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 1
Query: 1 SIPDCRVLLSRKRYAVLRGCRIVFSGVFPLGVVPEQSTEWRIARSLGAAC-------LKQPVQGSVLATHCVALREGTEKVMFA-KSNGIHVVHVAWLFASAARFTKLSE 306
SIPD +++L + VL G +VFSGVFP + PEQS W++A +LGA +K + TH VA + GT KV A ++ IH+V WL+ R+ ++ E
Sbjct: 464 SIPDLKIILPALKQKVLAGVNLVFSGVFPTNMNPEQSKAWKVASALGARISPGIICGVKGSASPANATTHLVAAKAGTSKVHTAQRAKSIHIVTPEWLWCCWERWQRVDE 573 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119083.3915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig119083.3915.1 >prot_M-pyrifera_M_contig119083.3915.1 ID=prot_M-pyrifera_M_contig119083.3915.1|Name=mRNA_M-pyrifera_M_contig119083.3915.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp SIPDCRVLLSRKRYAVLRGCRIVFSGVFPLGVVPEQSTEWRIARSLGAACback to top mRNA from alignment at M-pyrifera_M_contig119083:193..534- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig119083.3915.1 ID=mRNA_M-pyrifera_M_contig119083.3915.1|Name=mRNA_M-pyrifera_M_contig119083.3915.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig119083:193..534- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig119083:193..534- >mRNA_M-pyrifera_M_contig119083.3915.1 ID=mRNA_M-pyrifera_M_contig119083.3915.1|Name=mRNA_M-pyrifera_M_contig119083.3915.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig119083:193..534- (Macrocystis pyrifera P11B4 male)back to top |