mRNA_M-pyrifera_M_contig119070.3911.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig119070.3911.1
Unique NamemRNA_M-pyrifera_M_contig119070.3911.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig119070.3911.1 vs. uniprot
Match: UPI00193D3F97 (cytochrome P450 4C1-like isoform X1 n=6 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193D3F97)

HSP 1 Score: 62.0 bits (149), Expect = 1.670e-9
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 1
Query:   10 PILALHHSSDLWPAPEAFDAQRFATEAPQQQECAFMPFGHGPATCPAQRLAMIALKALLVALLRRHRV 213
            PI+ +H + ++WP P  FD  RF  E   +++ A++PF  GP +C  ++ A+I LK L+VA+LR+ +V
Sbjct:  263 PIVLVHRNPEVWPDPLKFDPDRFLPENKNKKQYAYIPFSSGPRSCIGKKFALIELKILVVAILRKWKV 330          
BLAST of mRNA_M-pyrifera_M_contig119070.3911.1 vs. uniprot
Match: A0A7Y3D8V5_9DELT (Cytochrome P450 n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3D8V5_9DELT)

HSP 1 Score: 62.0 bits (149), Expect = 1.790e-9
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   25 HHSSDLWPAPEAFDAQRFATEAPQQQECAFMPFGHGPATCPAQRLAMIALKALLVALLRRHRVREGD 225
            H  +DLWPAP AFD +RF +EAP+    A+ PFG GP  C  QR AM+ L A+L  L +R  +   D
Sbjct:  599 HRRADLWPAPGAFDPERFLSEAPRAP-FAWYPFGGGPRACIGQRFAMVELTAILATLHQRVALEAQD 664          
BLAST of mRNA_M-pyrifera_M_contig119070.3911.1 vs. uniprot
Match: UPI001746616D (LOW QUALITY PROTEIN: cytochrome P450 4C1 n=1 Tax=Monomorium pharaonis TaxID=307658 RepID=UPI001746616D)

HSP 1 Score: 61.2 bits (147), Expect = 3.300e-9
Identity = 28/71 (39.44%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   10 PILALHHSSDLWPAPEAFDAQRFATE-APQQQECAFMPFGHGPATCPAQRLAMIALKALLVALLRRHRVRE 219
            PI+  H +S++WP P  FD  RF  E +  +   A++PF  GP  C  QR A++ LK +L+A+LR+ +V+ 
Sbjct:  413 PIILAHRNSEIWPEPMKFDPNRFLPENSKHRNPYAYVPFSAGPRNCIGQRFALLELKIVLIAILRKWKVKS 483          
BLAST of mRNA_M-pyrifera_M_contig119070.3911.1 vs. uniprot
Match: B3RXE7_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RXE7_TRIAD)

HSP 1 Score: 60.8 bits (146), Expect = 4.510e-9
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 1
Query:   10 PILALHHSSDLWPAPEAFDAQRFATEAP-QQQECAFMPFGHGPATCPAQRLAMIALKALLVALL 198
            PI A+HH+  +WP PE F  +RF  E   +    AF+PFG GP  C   RLA++ ++A LVA+L
Sbjct:  404 PIYAVHHNPQIWPNPEKFIPERFTPEEKIKHHPMAFIPFGGGPRNCIGTRLALLEVRAALVAIL 467          
BLAST of mRNA_M-pyrifera_M_contig119070.3911.1 vs. uniprot
Match: A0A210PG00_MIZYE (Cytochrome P450 3A2 n=3 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PG00_MIZYE)

HSP 1 Score: 60.5 bits (145), Expect = 6.150e-9
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   10 PILALHHSSDLWPAPEAFDAQRF-ATEAPQQQECAFMPFGHGPATCPAQRLAMIALKALLVALLRRHRVREGD 225
            P+ A+HH  ++W  P+ F+ +RF A+E   Q    FMPFG+GP +C A RLA++ +K     +++  R   G 
Sbjct:  389 PVYAIHHDPEVWEKPDVFNPERFSASERANQDPLDFMPFGYGPRSCIAMRLALLEVKMATADIVQNFRFSVGS 461          
BLAST of mRNA_M-pyrifera_M_contig119070.3911.1 vs. uniprot
Match: A0A7R9PZR1_9ACAR (Hypothetical protein n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9PZR1_9ACAR)

HSP 1 Score: 60.1 bits (144), Expect = 8.460e-9
Identity = 30/71 (42.25%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   13 ILALHHSSDLWPAPEAFDAQRFATEAPQQQE---CAFMPFGHGPATCPAQRLAMIALKALLVALLRRHRVR 216
            I  LH    ++P PE +D  RFA++ P  Q     A++PF  GP  C  Q+ A++  KALL A+LRR+R+R
Sbjct:  192 IYMLHRDPKVFPNPEVYDPNRFASDGPDVQSRHPYAYVPFSAGPRNCIGQKFALLEEKALLAAILRRYRIR 262          
BLAST of mRNA_M-pyrifera_M_contig119070.3911.1 vs. uniprot
Match: E9J6D8_SOLIN (Uncharacterized protein (Fragment) n=1 Tax=Solenopsis invicta TaxID=13686 RepID=E9J6D8_SOLIN)

HSP 1 Score: 59.3 bits (142), Expect = 1.310e-8
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   10 PILALHHSSDLWPAPEAFDAQRFATE-APQQQECAFMPFGHGPATCPAQRLAMIALKALLVALLRRHRVRE 219
            PIL +H + ++WP P  FD  RF  E +  +   A++PF  GP  C   R A + +K LLVA+LR+ RV+ 
Sbjct:  201 PILLVHRNPEVWPDPLKFDPDRFLPENSKDRNPYAYVPFSAGPRNCVGMRFAQLEMKLLLVAILRKWRVKS 271          
BLAST of mRNA_M-pyrifera_M_contig119070.3911.1 vs. uniprot
Match: UPI00193D827B (cytochrome P450 4C1 n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193D827B)

HSP 1 Score: 59.3 bits (142), Expect = 1.580e-8
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   10 PILALHHSSDLWPAPEAFDAQRFATE-APQQQECAFMPFGHGPATCPAQRLAMIALKALLVALLRRHRVRE 219
            PIL +H + ++WP P  FD  RF  E +  +   A++PF  GP  C   R A + +K LLVA+LR+ RV+ 
Sbjct:  413 PILLVHRNPEVWPDPLKFDPDRFLPENSKDRNPYAYVPFSAGPRNCVGMRFAQLEMKLLLVAILRKWRVKS 483          
BLAST of mRNA_M-pyrifera_M_contig119070.3911.1 vs. uniprot
Match: A0A8J1YCH4_OWEFU (Ofus.G26591 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1YCH4_OWEFU)

HSP 1 Score: 55.5 bits (132), Expect = 3.370e-8
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   10 PILALHHSSDLWPAPEAFDAQRF-ATEAPQQQECAFMPFGHGPATCPAQRLAMIALKALLVALLRRHRVREGD 225
            P+  +HH +D++P PE F  +RF A E  ++    F PFG GP +C A RLA + +K  L  ++++ R+   +
Sbjct:    6 PVYGIHHDADIYPDPEKFIPERFSAEEKAKRNPYFFQPFGLGPRSCIAMRLAQVEVKLCLAKIIQKLRLLPSE 78          
BLAST of mRNA_M-pyrifera_M_contig119070.3911.1 vs. uniprot
Match: UPI0018958140 (cytochrome P450 3A6-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018958140)

HSP 1 Score: 58.2 bits (139), Expect = 4.020e-8
Identity = 27/64 (42.19%), Postives = 37/64 (57.81%), Query Frame = 1
Query:   10 PILALHHSSDLWPAPEAFDAQRFATEAPQQQECAFMPFGHGPATCPAQRLAMIALKALLVALLR 201
            P   +H + ++WP P+ F  +RFA E       ++ PFG GP TC A RLAM+ LK  L  L+R
Sbjct:  397 PPWHIHRNEEMWPEPDRFVPERFAPEHRDNVASSYYPFGLGPRTCVAHRLAMVTLKTALYRLVR 460          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig119070.3911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00193D3F971.670e-939.71cytochrome P450 4C1-like isoform X1 n=6 Tax=Soleno... [more]
A0A7Y3D8V5_9DELT1.790e-947.76Cytochrome P450 n=1 Tax=Myxococcales bacterium Tax... [more]
UPI001746616D3.300e-939.44LOW QUALITY PROTEIN: cytochrome P450 4C1 n=1 Tax=M... [more]
B3RXE7_TRIAD4.510e-945.31Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
A0A210PG00_MIZYE6.150e-936.99Cytochrome P450 3A2 n=3 Tax=Mizuhopecten yessoensi... [more]
A0A7R9PZR1_9ACAR8.460e-942.25Hypothetical protein n=1 Tax=Medioppia subpectinat... [more]
E9J6D8_SOLIN1.310e-840.85Uncharacterized protein (Fragment) n=1 Tax=Solenop... [more]
UPI00193D827B1.580e-840.85cytochrome P450 4C1 n=1 Tax=Solenopsis invicta Tax... [more]
A0A8J1YCH4_OWEFU3.370e-835.62Ofus.G26591 protein n=1 Tax=Owenia fusiformis TaxI... [more]
UPI00189581404.020e-842.19cytochrome P450 3A6-like n=1 Tax=Rhipicephalus san... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig119070contigM-pyrifera_M_contig119070:15..239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.8
Seed ortholog evalue2.5e-09
Seed eggNOG ortholog6500.XP_005094362.1
Preferred nameCYP3A4
KEGG rclassRC00046,RC00060,RC00181,RC00190,RC00225,RC00277,RC00490,RC00704,RC00723,RC00724,RC01198,RC01203,RC01349,RC01444,RC01445,RC01459,RC01624,RC01711,RC01727,RC02136,RC02225,RC02226,RC02228,RC02229,RC02230,RC02232,RC02234,RC02238,RC02239,RC02241,RC02246,RC02266,RC02267,RC02274,RC02281,RC02298,RC02299,RC02526,RC02531
KEGG koko:K07424,ko:K17689,ko:K17690,ko:K17691,ko:K17692,ko:K17860
KEGG ReactionR02356,R03408,R05727,R07000,R07001,R07055,R07056,R07079,R07080,R07081,R07085,R07087,R08256,R08257,R08264,R08268,R08269,R08271,R08272,R08274,R08275,R08276,R08277,R08285,R08286,R08287,R08293,R08294,R08303,R08304,R08312,R08313,R08318,R08339,R08340,R08341,R08342,R08343,R08390,R08391,R08392,R09404,R09408,R09423
KEGG Pathwayko00140,ko00591,ko00830,ko00980,ko00982,ko00983,ko01100,ko05204,map00140,map00591,map00830,map00980,map00982,map00983,map01100,map05204
Hectar predicted targeting categoryother localisation
GOsGO:0001676,GO:0002933,GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0005496,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006694,GO:0006706,GO:0006720,GO:0006721,GO:0006766,GO:0006775,GO:0006805,GO:0006807,GO:0007568,GO:0007584,GO:0008144,GO:0008150,GO:0008152,GO:0008202,GO:0008207,GO:0008209,GO:0008289,GO:0008390,GO:0008395,GO:0008610,GO:0009056,GO:0009058,GO:0009110,GO:0009410,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009725,GO:0009820,GO:0009822,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010604,GO:0010628,GO:0010817,GO:0012505,GO:0014070,GO:0016020,GO:0016042,GO:0016053,GO:0016098,GO:0016491,GO:0016705,GO:0016725,GO:0017144,GO:0019222,GO:0019751,GO:0019752,GO:0019825,GO:0019899,GO:0030258,GO:0030343,GO:0031090,GO:0031667,GO:0031960,GO:0031984,GO:0032451,GO:0032502,GO:0032787,GO:0033695,GO:0033993,GO:0034641,GO:0034754,GO:0034875,GO:0036094,GO:0036378,GO:0042175,GO:0042180,GO:0042221,GO:0042359,GO:0042362,GO:0042368,GO:0042445,GO:0042446,GO:0042448,GO:0042493,GO:0042737,GO:0042738,GO:0042759,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044270,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046165,GO:0046173,GO:0046394,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0048518,GO:0048545,GO:0050649,GO:0050789,GO:0050896,GO:0051384,GO:0051704,GO:0051707,GO:0051716,GO:0055114,GO:0060255,GO:0065007,GO:0065008,GO:0070576,GO:0070640,GO:0070643,GO:0070887,GO:0070988,GO:0070989,GO:0071466,GO:0071704,GO:0072330,GO:0097159,GO:0098827,GO:0101020,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1902652
EggNOG free text desc.cytochrome P450
EggNOG OGs38BTY@33154,3BF8S@33208,3CV2F@33213,COG2124@1,KOG0158@2759
EC1.14.13.32,1.14.13.97,1.14.14.1,1.14.14.55,1.14.14.56
COG Functional cat.Q
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00199,ko01000
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.3503525-CDS-M-pyrifera_M_contig119070:14..2391622815709.3503525-CDS-M-pyrifera_M_contig119070:14..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119070 15..239 -
1692277532.7881708-CDS-M-pyrifera_M_contig119070:14..2391692277532.7881708-CDS-M-pyrifera_M_contig119070:14..239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig119070 15..239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig119070.3911.1prot_M-pyrifera_M_contig119070.3911.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig119070 15..239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig119070.3911.1

>prot_M-pyrifera_M_contig119070.3911.1 ID=prot_M-pyrifera_M_contig119070.3911.1|Name=mRNA_M-pyrifera_M_contig119070.3911.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
FECPILALHHSSDLWPAPEAFDAQRFATEAPQQQECAFMPFGHGPATCPA
QRLAMIALKALLVALLRRHRVREGD
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mRNA from alignment at M-pyrifera_M_contig119070:15..239-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig119070.3911.1 ID=mRNA_M-pyrifera_M_contig119070.3911.1|Name=mRNA_M-pyrifera_M_contig119070.3911.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig119070:15..239- (Macrocystis pyrifera P11B4 male)
TTCGAGTGTCCCATCCTGGCGCTGCACCACAGCTCAGACCTATGGCCAGC CCCAGAAGCATTTGACGCCCAGCGCTTTGCCACGGAGGCACCGCAGCAGC AGGAGTGTGCGTTCATGCCCTTTGGCCACGGGCCCGCCACCTGCCCGGCA CAGCGCCTGGCGATGATCGCACTCAAGGCCCTGCTCGTGGCTTTGCTACG GAGACACCGCGTGCGTGAAGGCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig119070:15..239-

>mRNA_M-pyrifera_M_contig119070.3911.1 ID=mRNA_M-pyrifera_M_contig119070.3911.1|Name=mRNA_M-pyrifera_M_contig119070.3911.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig119070:15..239- (Macrocystis pyrifera P11B4 male)
TTCGAGTGTCCCATCCTGGCGCTGCACCACAGCTCAGACCTATGGCCAGC
CCCAGAAGCATTTGACGCCCAGCGCTTTGCCACGGAGGCACCGCAGCAGC
AGGAGTGTGCGTTCATGCCCTTTGGCCACGGGCCCGCCACCTGCCCGGCA
CAGCGCCTGGCGATGATCGCACTCAAGGCCCTGCTCGTGGCTTTGCTACG
GAGACACCGCGTGCGTGAAGGCGACTTCGAGTGTCCCATCCTGGCGCTGC
ACCACAGCTCAGACCTATGGCCAGCCCCAGAAGCATTTGACGCCCAGCGC
TTTGCCACGGAGGCACCGCAGCAGCAGGAGTGTGCGTTCATGCCCTTTGG
CCACGGGCCCGCCACCTGCCCGGCACAGCGCCTGGCGATGATCGCACTCA
AGGCCCTGCTCGTGGCTTTGCTACGGAGACACCGCGTGCGTGAAGGCGAC
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