mRNA_M-pyrifera_M_contig118891.3879.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118891.3879.1
Unique NamemRNA_M-pyrifera_M_contig118891.3879.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118891.3879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118891contigM-pyrifera_M_contig118891:208..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.7
Seed ortholog evalue3.1e-08
Seed eggNOG ortholog1192034.CAP_2076
KEGG koko:K03929
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the type-B carboxylesterase lipase family
EggNOG OGs1MVQZ@1224,2WUZ8@28221,2YUU5@29,42SQR@68525,COG2272@1,COG2272@2
COG Functional cat.I
CAZyCE10
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.6099598-CDS-M-pyrifera_M_contig118891:207..5431622815707.6099598-CDS-M-pyrifera_M_contig118891:207..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118891 208..543 -
1692277531.8191543-CDS-M-pyrifera_M_contig118891:207..5431692277531.8191543-CDS-M-pyrifera_M_contig118891:207..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118891 208..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118891.3879.1prot_M-pyrifera_M_contig118891.3879.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118891 208..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118891.3879.1

>prot_M-pyrifera_M_contig118891.3879.1 ID=prot_M-pyrifera_M_contig118891.3879.1|Name=mRNA_M-pyrifera_M_contig118891.3879.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
SPPRTHPHTLCLTHVQYGVCHSAEIPFVFHSDGFVSDGSMTEAELGLSWS
FVDYWVNAANGAFASGSWGPAWPLYSAANDESLVFNLPEVHTMAGYHSSR
CDFWDSLGYVN*
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mRNA from alignment at M-pyrifera_M_contig118891:208..543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118891.3879.1 ID=mRNA_M-pyrifera_M_contig118891.3879.1|Name=mRNA_M-pyrifera_M_contig118891.3879.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig118891:208..543- (Macrocystis pyrifera P11B4 male)
TCCCCCCCCCGCACACACCCTCACACGCTGTGCCTGACCCATGTACAGTA
CGGCGTGTGCCACAGTGCCGAAATCCCGTTTGTGTTTCATAGTGACGGAT
TCGTTTCAGATGGTAGCATGACGGAGGCGGAGCTCGGCCTCTCGTGGTCG
TTTGTTGACTATTGGGTCAACGCAGCCAACGGTGCCTTCGCGAGCGGCAG
CTGGGGCCCTGCTTGGCCTCTCTACAGCGCAGCCAACGACGAGAGCCTTG
TTTTTAACCTCCCTGAGGTTCACACTATGGCAGGCTACCACTCCTCCAGG
TGTGACTTCTGGGACTCGCTTGGCTATGTAAACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118891:208..543-

>mRNA_M-pyrifera_M_contig118891.3879.1 ID=mRNA_M-pyrifera_M_contig118891.3879.1|Name=mRNA_M-pyrifera_M_contig118891.3879.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig118891:208..543- (Macrocystis pyrifera P11B4 male)
TCCCCCCCCCGCACACACCCTCACACGCTGTGCCTGACCCATGTACAGTA
CGGCGTGTGCCACAGTGCCGAAATCCCGTTTGTGTTTCATAGTGACGGAT
TCGTTTCAGATGGTAGCATGACGGAGGCGGAGCTCGGCCTCTCGTGGTCG
TTTGTTGACTATTGGGTCAACGCAGCCAACGGTGCCTTCGCGAGCGGCAG
CTGGGGCCCTGCTTGGCCTCTCTACAGCGCAGCCAACGACGAGAGCCTTG
TTTTTAACCTCCCTGAGGTTCACACTATGGCAGGCTACCACTCCTCCAGG
TGTGACTTCTGGGACTCGCTTGGCTATGTAAACTGATCCCCCCCCCGCAC
ACACCCTCACACGCTGTGCCTGACCCATGTACAGTACGGCGTGTGCCACA
GTGCCGAAATCCCGTTTGTGTTTCATAGTGACGGATTCGTTTCAGATGGT
AGCATGACGGAGGCGGAGCTCGGCCTCTCGTGGTCGTTTGTTGACTATTG
GGTCAACGCAGCCAACGGTGCCTTCGCGAGCGGCAGCTGGGGCCCTGCTT
GGCCTCTCTACAGCGCAGCCAACGACGAGAGCCTTGTTTTTAACCTCCCT
GAGGTTCACACTATGGCAGGCTACCACTCCTCCAGGTGTGACTTCTGGGA
CTCGCTTGGCTATGTAAACTGA
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