mRNA_M-pyrifera_M_contig118804.3871.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118804.3871.1
Unique NamemRNA_M-pyrifera_M_contig118804.3871.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118804.3871.1 vs. uniprot
Match: A0A5A8EH46_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EH46_CAFRO)

HSP 1 Score: 92.8 bits (229), Expect = 2.210e-19
Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 1 
Query:    1 RVFSQEHDAYFWFDVASGQSSWETPRVVKRLFGSGMAFGAGVTEAKSAYAAVGAEAVRRGVREGRGKEELTEVQAATKLQATWRMRKARNGAKEKAKKRYVKAHDKRWGIDFYFDTVTGNASWVPPAIL 387
            R+   +    FW+  A G+S+WETPRVV+RLFG G+AF A V +A+ A A  G    R GVREG   ++LT  QAAT +QA  R R AR+  + +     ++     WG  +YF+  T  A+W+ P +L
Sbjct:  793 RLIDGDSGQAFWYSTADGESTWETPRVVRRLFGGGLAFAAAVEDAQ-ARALEG----RTGVREGHSADDLTPDQAATAIQAVQRGRSARSAVRRRQLSSTLRLWSDEWGCFYYFNEATQQAAWLRPLLL 916
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BLAST of mRNA_M-pyrifera_M_contig118804.3871.1 vs. uniprot
Match: A0A5A8DJB3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJB3_CAFRO)

HSP 1 Score: 76.6 bits (187), Expect = 9.900e-14
Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:   61 SWETPRVVKRLFGSGMAFGAGVTEAKSAYAAVGAEAVRRGVREGRGKEELTEVQAATKLQATWRMRKARNGAKEKAKKRYVKAHDKRWGIDFYFDTVTGNASWVPPAIL 387
            +WETPRVV+RLFG G+AF A V +A+ A A  G    R GVREG    +LT  QAAT +QA  R R AR+  + +     ++     WG  +YF+  T  A+W+ P +L
Sbjct:  643 TWETPRVVRRLFGGGLAFAAAVEDAQ-ARALEG----RTGVREGHSAADLTPDQAATAIQAVQRGRSARSAVRRRQLSSTLRLWSDEWGCFYYFNEATQQAAWLRPLLL 746
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BLAST of mRNA_M-pyrifera_M_contig118804.3871.1 vs. uniprot
Match: A0A812J3M2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812J3M2_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 1.530e-9
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 1 
Query:    1 RVFSQEHDAYFWFDVASGQSSWETPRVVKRLFGSGMAFGAGVTEAKSAYAAVGAEAVRRGVREGRGKEELTEVQAATKLQATWRMRKARNGAKEKAKKRYVKAHDKRWGIDFYFDTVTGNASWVPPAIL 387
            RV+ + + A+++F+  +G+S+W+TP ++ RLFGS           K+    +G     +  R GR   +L+E  A  KLQ+  RM  AR  A      R  K      G  FY+DT+   A+W  PAIL
Sbjct:  800 RVWDESYQAHYFFNKLTGESAWDTPALIVRLFGSSATL-LDTPRNKALSVRLGVRPRHKPPRTGRRAHDLSEAAACLKLQSAVRMFAARRLALALLHARVRKVWHAEHGAYFYYDTLRHAATWFKPAIL 927
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BLAST of mRNA_M-pyrifera_M_contig118804.3871.1 vs. uniprot
Match: A0A225WM26_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WM26_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.400e-6
Identity = 36/129 (27.91%), Postives = 65/129 (50.39%), Query Frame = 1 
Query:    1 RVFSQEHDAYFWFDVASGQSSWETPRVVKRLFGSGMAFGAGVTEAKSAYAAVGAEAVRRGVREGRGKEELTEVQAATKLQATWRMRKARNGAKEKAKKRYVKAHDKRWGIDFYFDTVTGNASWVPPAIL 387
            R++  E D Y++ +  S +++WE P +++          +   +  +  +AV     R          ELTEV+AAT+LQ  +R +KA++    +  +R+ +A D   G  +Y + +T   SW PPA+L
Sbjct:   89 RIYDPEQDMYYYHNTRSKETTWEKPLLLRGAESDVFTPRSRQKKMHTLMSAVNRTPSR----------ELTEVEAATRLQGLYRAKKAKDELGARLMQRFKQAVDPSSGQVYYVNLLTEEVSWDPPALL 207
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118804.3871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A5A8EH46_CAFRO2.210e-1941.09Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A5A8DJB3_CAFRO9.900e-1443.12Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A812J3M2_9DINO1.530e-933.33Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A225WM26_9STRA4.400e-627.91Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118804contigM-pyrifera_M_contig118804:3..389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.087436-CDS-M-pyrifera_M_contig118804:2..3891622815707.087436-CDS-M-pyrifera_M_contig118804:2..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118804 3..389 +
1692277531.5152047-CDS-M-pyrifera_M_contig118804:2..3891692277531.5152047-CDS-M-pyrifera_M_contig118804:2..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118804 3..389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118804.3871.1prot_M-pyrifera_M_contig118804.3871.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118804 3..389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118804.3871.1

>prot_M-pyrifera_M_contig118804.3871.1 ID=prot_M-pyrifera_M_contig118804.3871.1|Name=mRNA_M-pyrifera_M_contig118804.3871.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
RVFSQEHDAYFWFDVASGQSSWETPRVVKRLFGSGMAFGAGVTEAKSAYA
AVGAEAVRRGVREGRGKEELTEVQAATKLQATWRMRKARNGAKEKAKKRY
VKAHDKRWGIDFYFDTVTGNASWVPPAIL
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mRNA from alignment at M-pyrifera_M_contig118804:3..389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118804.3871.1 ID=mRNA_M-pyrifera_M_contig118804.3871.1|Name=mRNA_M-pyrifera_M_contig118804.3871.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig118804:3..389+ (Macrocystis pyrifera P11B4 male)
CGGGTCTTCAGCCAAGAGCACGACGCCTACTTTTGGTTCGACGTGGCTTC
GGGTCAATCGTCATGGGAAACGCCCCGAGTGGTGAAGCGGCTGTTTGGGT
CTGGGATGGCGTTCGGGGCAGGGGTGACGGAAGCCAAGAGTGCTTATGCG
GCAGTGGGGGCAGAGGCGGTGCGAAGAGGGGTGAGGGAGGGCAGGGGGAA
GGAGGAGCTGACAGAGGTGCAAGCGGCAACAAAACTCCAAGCCACGTGGA
GAATGAGAAAGGCGAGGAATGGCGCCAAGGAAAAGGCGAAGAAGAGGTAC
GTCAAGGCACACGACAAGAGGTGGGGCATCGACTTCTACTTTGACACAGT
CACAGGAAACGCCTCATGGGTCCCACCGGCCATCCTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118804:3..389+

>mRNA_M-pyrifera_M_contig118804.3871.1 ID=mRNA_M-pyrifera_M_contig118804.3871.1|Name=mRNA_M-pyrifera_M_contig118804.3871.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig118804:3..389+ (Macrocystis pyrifera P11B4 male)
CGGGTCTTCAGCCAAGAGCACGACGCCTACTTTTGGTTCGACGTGGCTTC
GGGTCAATCGTCATGGGAAACGCCCCGAGTGGTGAAGCGGCTGTTTGGGT
CTGGGATGGCGTTCGGGGCAGGGGTGACGGAAGCCAAGAGTGCTTATGCG
GCAGTGGGGGCAGAGGCGGTGCGAAGAGGGGTGAGGGAGGGCAGGGGGAA
GGAGGAGCTGACAGAGGTGCAAGCGGCAACAAAACTCCAAGCCACGTGGA
GAATGAGAAAGGCGAGGAATGGCGCCAAGGAAAAGGCGAAGAAGAGGTAC
GTCAAGGCACACGACAAGAGGTGGGGCATCGACTTCTACTTTGACACAGT
CACAGGAAACGCCTCATGGGTCCCACCGGCCATCCTACGGGTCTTCAGCC
AAGAGCACGACGCCTACTTTTGGTTCGACGTGGCTTCGGGTCAATCGTCA
TGGGAAACGCCCCGAGTGGTGAAGCGGCTGTTTGGGTCTGGGATGGCGTT
CGGGGCAGGGGTGACGGAAGCCAAGAGTGCTTATGCGGCAGTGGGGGCAG
AGGCGGTGCGAAGAGGGGTGAGGGAGGGCAGGGGGAAGGAGGAGCTGACA
GAGGTGCAAGCGGCAACAAAACTCCAAGCCACGTGGAGAATGAGAAAGGC
GAGGAATGGCGCCAAGGAAAAGGCGAAGAAGAGGTACGTCAAGGCACACG
ACAAGAGGTGGGGCATCGACTTCTACTTTGACACAGTCACAGGAAACGCC
TCATGGGTCCCACCGGCCATCCTA
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