mRNA_M-pyrifera_M_contig118711.3851.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118711.3851.1
Unique NamemRNA_M-pyrifera_M_contig118711.3851.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118711.3851.1 vs. uniprot
Match: A0A7W1VWH1_9BACT (IPT/TIG domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1VWH1_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 6.570e-14
Identity = 47/126 (37.30%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:    1 PVLQPLLPSHGPTSGGFEVVLQGSNFGLNGTVRVVGDASLSPAAERASFTVAWWLVEEYGHRVIRVKMPEGQGYNRRVRVEVGGQVSNEVSFEYDSPNVTEVVPAHGNTNGGYVLRLLGTSFGESG 378
            PVL  ++P+ GP+SGG  V L GSNFG NGTV   G+                  +  Y    I    P GQG +  V V V G+ S  + F Y+ P +T++ P    T GG ++ L G+SFG SG
Sbjct:   31 PVLNVMVPNSGPSSGGTLVTLTGSNFGTNGTVIFNGNVC---------------TISSYTDSQIEFFSPAGQGTDLPVYVNVNGENSGVIPFNYNPPFITDIFPTSAPTAGGAIVTLAGSSFGTSG 141
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BLAST of mRNA_M-pyrifera_M_contig118711.3851.1 vs. uniprot
Match: A0A7S0W2L9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W2L9_9CRYP)

HSP 1 Score: 68.2 bits (165), Expect = 7.210e-11
Identity = 43/139 (30.94%), Postives = 71/139 (51.08%), Query Frame = 1 
Query:    1 PVLQPLLPSHGPTSGGFEVVLQGSNFGLNGTVRVVGDASLSPAAE---RASFTVAWWLVEEYGHRVIRVKMPEGQGYNRRVRVEVGGQVSN---EVSFEYDSPNVTEVVPAHGNTNGGYVLRLLGTSFGESGASVRIEI 399
            P++  + PS+GPT GG  + + G+NFG         D+++ P       A  +V W          +  + P+G G +R V VEVG + S    +  F+YDSP V  + PAHG   GG ++ + G +FGE+ ++  + +
Sbjct:   80 PIVDTIRPSNGPTKGGTIITIGGTNFGS-------ADSNIQPRVTVGGEACPSVVW-----VSKSSVLCETPDGVGADRSVVVEVGSRQSAPSAQSKFQYDSPKVLGIEPAHGPAKGGTMVTIAGLNFGETNSNPSVTL 206
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BLAST of mRNA_M-pyrifera_M_contig118711.3851.1 vs. uniprot
Match: A0A7S1G944_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G944_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.150e-10
Identity = 47/133 (35.34%), Postives = 69/133 (51.88%), Query Frame = 1 
Query:    1 PVLQPLLPSHGPTSGGFEVVLQGSNFGLNGTVRVVGDA---SLSPAAERASFTVAWWLVEEYGHRVIRVKMPEGQG-YNRRVRVEVGGQVSNEVSFEYDSPNVTEVVPAHGNTNGGYVLRLLGTSFGESGASV 387
            PV+  ++PS GP++GGF + + G+ F   G VR+       SL+PA E        ++   +   V+  ++P GQG Y+  +  E     S    FE+D P +  V PA   T+GG VL L GTSFG +G  V
Sbjct:  836 PVIDSIVPSSGPSNGGFNITITGNGFKRGGDVRLFSTTPQDSLAPAPEALELECRIFI---WTSTVVSCEVPPGQGVYSLVLSTETLNSPS--ARFEFDRPQLFSVAPATVPTDGGTVLELSGTSFGLNGRVV 963
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BLAST of mRNA_M-pyrifera_M_contig118711.3851.1 vs. uniprot
Match: UPI001866E227 (IPT/TIG domain-containing protein n=1 Tax=Luteolibacter sp. NBU1238 TaxID=2776705 RepID=UPI001866E227)

HSP 1 Score: 60.8 bits (146), Expect = 3.980e-8
Identity = 43/122 (35.25%), Postives = 59/122 (48.36%), Query Frame = 1 
Query:   34 PTSGGFEVVLQGSNFGLNGTVRV-VGDASLSPAAERASFTVAWWLVEEYGHRVIRVKMPEGQGYNRRVRVEVGGQVSNEVSFEYDSPNVTEV-VPAHGNTNGGYVLRLLGTSFGESGASVRI 393
            PTSG   + L+G+ FG  G+  V +G A+ +  A+  +               I    P GQG N  V V   G  SN + F YD P  T    P+   T GG  + +LG++FGESGA+V I
Sbjct:   42 PTSGSGSITLEGTGFGPFGSATVLIGGAAATVTAQTDTD--------------ITCSAPPGQGANLPVTVTAFGDTSNALQFTYDPPLATAFNTPSGKPTTGGVAIEVLGSNFGESGATVTI 149
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BLAST of mRNA_M-pyrifera_M_contig118711.3851.1 vs. uniprot
Match: UPI001AF164E6 (IPT/TIG domain-containing protein n=1 Tax=Luteitalea sp. TBR-22 TaxID=2802971 RepID=UPI001AF164E6)

HSP 1 Score: 53.1 bits (126), Expect = 1.920e-5
Identity = 38/132 (28.79%), Postives = 65/132 (49.24%), Query Frame = 1 
Query:    1 PVLQPLLPSHGPTSGGFEVVLQGSNFGLNGTVRVVGDASLSPAAERASFTVAWWLVEEYGHRVIRVKMPEGQGYNRRVRVEVGGQVSNEVSFEYDSPNVTEVVPAHGNTNGGYVLRLLGTSFGESGASVRIE 396
            P +    P+ GPTSGG +VV+ G+NF  NG +   G  + + ++   +  VA    +  G   I V  P+G G           ++ N  ++   +P +T V PA G + GG  +++ G  F ++G SV ++
Sbjct:  207 PAISSFAPALGPTSGGTDVVITGTNF-QNGVIVRFGAIAATVSSVTTTRLVARTPAQSRGTVAISVVNPDGNGV----------ELPNAFTYRGPAPRITSVTPAIGASVGGTEVQVDGADF-DAGVSVSVD 326
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118711.3851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7W1VWH1_9BACT6.570e-1437.30IPT/TIG domain-containing protein n=1 Tax=Verrucom... [more]
A0A7S0W2L9_9CRYP7.210e-1130.94Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1G944_9STRA1.150e-1035.34Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
UPI001866E2273.980e-835.25IPT/TIG domain-containing protein n=1 Tax=Luteolib... [more]
UPI001AF164E61.920e-528.79IPT/TIG domain-containing protein n=1 Tax=Luteital... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118711contigM-pyrifera_M_contig118711:67..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.0149605-CDS-M-pyrifera_M_contig118711:66..4711622815706.0149605-CDS-M-pyrifera_M_contig118711:66..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118711 67..471 -
1692277531.032948-CDS-M-pyrifera_M_contig118711:66..4711692277531.032948-CDS-M-pyrifera_M_contig118711:66..471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118711 67..471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118711.3851.1prot_M-pyrifera_M_contig118711.3851.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118711 67..471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118711.3851.1

>prot_M-pyrifera_M_contig118711.3851.1 ID=prot_M-pyrifera_M_contig118711.3851.1|Name=mRNA_M-pyrifera_M_contig118711.3851.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
PVLQPLLPSHGPTSGGFEVVLQGSNFGLNGTVRVVGDASLSPAAERASFT
VAWWLVEEYGHRVIRVKMPEGQGYNRRVRVEVGGQVSNEVSFEYDSPNVT
EVVPAHGNTNGGYVLRLLGTSFGESGASVRIEIAD
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mRNA from alignment at M-pyrifera_M_contig118711:67..471-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118711.3851.1 ID=mRNA_M-pyrifera_M_contig118711.3851.1|Name=mRNA_M-pyrifera_M_contig118711.3851.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig118711:67..471- (Macrocystis pyrifera P11B4 male)
CCGGTGCTGCAGCCGCTGCTGCCGAGCCACGGTCCGACGAGCGGTGGGTT
CGAGGTGGTGCTGCAGGGCAGCAACTTTGGGCTGAATGGCACGGTGCGGG
TGGTGGGCGACGCGTCGTTGTCGCCGGCGGCGGAGCGCGCGTCGTTCACG
GTGGCGTGGTGGCTGGTGGAGGAGTACGGTCACCGGGTGATCCGTGTGAA
GATGCCGGAGGGGCAGGGGTACAACCGGCGGGTGCGGGTGGAGGTGGGTG
GCCAGGTGTCGAACGAGGTGTCGTTTGAGTACGACAGCCCGAACGTGACG
GAGGTGGTGCCAGCGCACGGCAACACGAACGGCGGGTACGTTCTCCGGTT
GCTGGGCACGAGTTTCGGCGAGAGCGGGGCGAGCGTGCGGATCGAGATTG
CGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118711:67..471-

>mRNA_M-pyrifera_M_contig118711.3851.1 ID=mRNA_M-pyrifera_M_contig118711.3851.1|Name=mRNA_M-pyrifera_M_contig118711.3851.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig118711:67..471- (Macrocystis pyrifera P11B4 male)
CCGGTGCTGCAGCCGCTGCTGCCGAGCCACGGTCCGACGAGCGGTGGGTT
CGAGGTGGTGCTGCAGGGCAGCAACTTTGGGCTGAATGGCACGGTGCGGG
TGGTGGGCGACGCGTCGTTGTCGCCGGCGGCGGAGCGCGCGTCGTTCACG
GTGGCGTGGTGGCTGGTGGAGGAGTACGGTCACCGGGTGATCCGTGTGAA
GATGCCGGAGGGGCAGGGGTACAACCGGCGGGTGCGGGTGGAGGTGGGTG
GCCAGGTGTCGAACGAGGTGTCGTTTGAGTACGACAGCCCGAACGTGACG
GAGGTGGTGCCAGCGCACGGCAACACGAACGGCGGGTACGTTCTCCGGTT
GCTGGGCACGAGTTTCGGCGAGAGCGGGGCGAGCGTGCGGATCGAGATTG
CGGACCCGGTGCTGCAGCCGCTGCTGCCGAGCCACGGTCCGACGAGCGGT
GGGTTCGAGGTGGTGCTGCAGGGCAGCAACTTTGGGCTGAATGGCACGGT
GCGGGTGGTGGGCGACGCGTCGTTGTCGCCGGCGGCGGAGCGCGCGTCGT
TCACGGTGGCGTGGTGGCTGGTGGAGGAGTACGGTCACCGGGTGATCCGT
GTGAAGATGCCGGAGGGGCAGGGGTACAACCGGCGGGTGCGGGTGGAGGT
GGGTGGCCAGGTGTCGAACGAGGTGTCGTTTGAGTACGACAGCCCGAACG
TGACGGAGGTGGTGCCAGCGCACGGCAACACGAACGGCGGGTACGTTCTC
CGGTTGCTGGGCACGAGTTTCGGCGAGAGCGGGGCGAGCGTGCGGATCGA
GATTGCGGAC
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