mRNA_M-pyrifera_M_contig118705.3849.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118705.3849.1
Unique NamemRNA_M-pyrifera_M_contig118705.3849.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118705.3849.1 vs. uniprot
Match: A0A7S4I1E9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I1E9_9EUKA)

HSP 1 Score: 105 bits (261), Expect = 3.070e-24
Identity = 48/97 (49.48%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:    1 RESNVRDAMKEEGMERPFLLLCSMAPEMRNVVACSLGFSLYSCPYFGTVHLEAHAILTKPRQGMQTRVEQSYEKLNPLAGGGNWYLMLKRVIEVVFH 291
            R+S  R   K +G+ERPFLLL SM P +RN ++C LG+++++  YFG  H E++ IL     GMQ R  QSYE+LNPLA   NWY +L RV++  FH
Sbjct:  255 RDSEYRSKCKAQGVERPFLLLVSMPPMLRNQISCQLGWTIFTQDYFGDSHAESYHILCDSNSGMQARANQSYERLNPLAHNSNWYDILIRVMQATFH 351
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118705.3849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4I1E9_9EUKA3.070e-2449.48Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118705contigM-pyrifera_M_contig118705:105..545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118705.3849.1prot_M-pyrifera_M_contig118705.3849.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118705 105..521 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.8802652-CDS-M-pyrifera_M_contig118705:104..2681622815705.8802652-CDS-M-pyrifera_M_contig118705:104..268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118705 105..268 -
1692277530.9720204-CDS-M-pyrifera_M_contig118705:104..2681692277530.9720204-CDS-M-pyrifera_M_contig118705:104..268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118705 105..268 -
1622815705.8939538-CDS-M-pyrifera_M_contig118705:415..5211622815705.8939538-CDS-M-pyrifera_M_contig118705:415..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118705 416..521 -
1692277530.9818492-CDS-M-pyrifera_M_contig118705:415..5211692277530.9818492-CDS-M-pyrifera_M_contig118705:415..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118705 416..521 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.9098253-UTR-M-pyrifera_M_contig118705:521..5451622815705.9098253-UTR-M-pyrifera_M_contig118705:521..545Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118705 522..545 -
1692277530.9912384-UTR-M-pyrifera_M_contig118705:521..5451692277530.9912384-UTR-M-pyrifera_M_contig118705:521..545Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118705 522..545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118705.3849.1

>prot_M-pyrifera_M_contig118705.3849.1 ID=prot_M-pyrifera_M_contig118705.3849.1|Name=mRNA_M-pyrifera_M_contig118705.3849.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
MKEEGMERPFLLLCSMAPEMRNVVACSLGFSLYSCPYFGTVHLEAHAILT
KPRQGMQTRVEQSYEKLNPLAGGGNWYLMLKRVIEVVFHQ
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mRNA from alignment at M-pyrifera_M_contig118705:105..545-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118705.3849.1 ID=mRNA_M-pyrifera_M_contig118705.3849.1|Name=mRNA_M-pyrifera_M_contig118705.3849.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig118705:105..545- (Macrocystis pyrifera P11B4 male)
CGTGAAAGTAATGTGAGAGATGCCATGAAGGAAGAGGGCATGGAGAGGCC
CTTCCTGCTCCTCTGCTCCATGGCCCCAGAGATGCGTAACGTAGTCGCCT
GCTCCCTCGGATTTTCGCTCTATTCCTGCCGTACGTAACCCGCCGTAAAG
CAATGCCCCTCAACCCCAAACAATCCCTCCAACACTTGCCCACTCTCACT
CGCTATTGCTCTCGATCTGTGTCTCATTTTTGGGTGAAGGGTCAGCGACA
GCAGCGAAGTGGACTGACGCAATGCAGCCTACTTTGGTACGGTTCACTTG
GAGGCACATGCCATCTTGACGAAGCCTCGCCAGGGTATGCAGACCAGGGT
CGAGCAGTCGTACGAGAAGCTCAATCCGCTGGCAGGGGGCGGCAACTGGT
ACCTCATGCTGAAGAGGGTGATCGAGGTCGTCTTCCACCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118705:105..545-

>mRNA_M-pyrifera_M_contig118705.3849.1 ID=mRNA_M-pyrifera_M_contig118705.3849.1|Name=mRNA_M-pyrifera_M_contig118705.3849.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig118705:105..545- (Macrocystis pyrifera P11B4 male)
ATGAAGGAAGAGGGCATGGAGAGGCCCTTCCTGCTCCTCTGCTCCATGGC
CCCAGAGATGCGTAACGTAGTCGCCTGCTCCCTCGGATTTTCGCTCTATT
CCTGCCATGAAGGAAGAGGGCATGGAGAGGCCCTTCCTGCTCCTCTGCTC
CATGGCCCCAGAGATGCGTAACGTAGTCGCCTGCTCCCTCGGATTTTCGC
TCTATTCCTGCCCCTACTTTGGTACGGTTCACTTGGAGGCACATGCCATC
TTGACGAAGCCTCGCCAGGGTATGCAGACCAGGGTCGAGCAGTCGTACGA
GAAGCTCAATCCGCTGGCAGGGGGCGGCAACTGGTACCTCATGCTGAAGA
GGGTGATCGAGGTCGTCTTCCACCAGCCTACTTTGGTACGGTTCACTTGG
AGGCACATGCCATCTTGACGAAGCCTCGCCAGGGTATGCAGACCAGGGTC
GAGCAGTCGTACGAGAAGCTCAATCCGCTGGCAGGGGGCGGCAACTGGTA
CCTCATGCTGAAGAGGGTGATCGAGGTCGTCTTCCACCAG
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