mRNA_M-pyrifera_M_contig118548.3831.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118548.3831.1
Unique NamemRNA_M-pyrifera_M_contig118548.3831.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118548.3831.1 vs. uniprot
Match: A6C2C7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris DSM 8797 TaxID=344747 RepID=A6C2C7_9PLAN)

HSP 1 Score: 56.2 bits (134), Expect = 1.520e-9
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 PLVHASPGNRNSRARNRTGYSNLMRVGRAPAPLR 102
            P VHASP   NSRARNRTG +NLMRVGRAPAPLR
Sbjct:   16 PKVHASPKVINSRARNRTGCTNLMRVGRAPAPLR 49
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118548.3831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A6C2C7_9PLAN1.520e-982.35Uncharacterized protein n=1 Tax=Gimesia maris DSM ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118548contigM-pyrifera_M_contig118548:117..230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.057065-CDS-M-pyrifera_M_contig118548:116..2301622815705.057065-CDS-M-pyrifera_M_contig118548:116..230Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118548 117..230 +
1692277530.656057-CDS-M-pyrifera_M_contig118548:116..2301692277530.656057-CDS-M-pyrifera_M_contig118548:116..230Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118548 117..230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118548.3831.1prot_M-pyrifera_M_contig118548.3831.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118548 117..230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118548.3831.1

>prot_M-pyrifera_M_contig118548.3831.1 ID=prot_M-pyrifera_M_contig118548.3831.1|Name=mRNA_M-pyrifera_M_contig118548.3831.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
PLVHASPGNRNSRARNRTGYSNLMRVGRAPAPLRQCA*
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mRNA from alignment at M-pyrifera_M_contig118548:117..230+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118548.3831.1 ID=mRNA_M-pyrifera_M_contig118548.3831.1|Name=mRNA_M-pyrifera_M_contig118548.3831.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig118548:117..230+ (Macrocystis pyrifera P11B4 male)
CCCTTGGTACATGCCAGCCCTGGAAATAGAAATAGCAGAGCCCGGAATCG
AACCGGGTATTCCAACCTTATGAGAGTCGGCCGGGCACCTGCCCCTCTGC
GTCAATGTGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118548:117..230+

>mRNA_M-pyrifera_M_contig118548.3831.1 ID=mRNA_M-pyrifera_M_contig118548.3831.1|Name=mRNA_M-pyrifera_M_contig118548.3831.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig118548:117..230+ (Macrocystis pyrifera P11B4 male)
CCCTTGGTACATGCCAGCCCTGGAAATAGAAATAGCAGAGCCCGGAATCG
AACCGGGTATTCCAACCTTATGAGAGTCGGCCGGGCACCTGCCCCTCTGC
GTCAATGTGCGTGACCCTTGGTACATGCCAGCCCTGGAAATAGAAATAGC
AGAGCCCGGAATCGAACCGGGTATTCCAACCTTATGAGAGTCGGCCGGGC
ACCTGCCCCTCTGCGTCAATGTGCGTGA
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