mRNA_M-pyrifera_M_contig118419.3813.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118419.3813.1
Unique NamemRNA_M-pyrifera_M_contig118419.3813.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118419.3813.1 vs. uniprot
Match: A0A812WJM1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WJM1_9DINO)

HSP 1 Score: 62.8 bits (151), Expect = 2.650e-10
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    7 DALLDPTDDWHARVMWKHACSKGVSGTPFYFVNDVLINGPS--TEQGWKALLDPLVQD 174
            +A  DPT   +AR+ WK+ CS+GVSGTPF+FVN VL +  +  +   W+AL+DPL+ D
Sbjct:  151 NAYADPTLYNNARISWKYGCSRGVSGTPFFFVNGVLTDASADWSLSQWQALIDPLLAD 208          
BLAST of mRNA_M-pyrifera_M_contig118419.3813.1 vs. uniprot
Match: A0A8B8BLE9_CRAVI (uncharacterized protein LOC111111455 n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8BLE9_CRAVI)

HSP 1 Score: 59.7 bits (143), Expect = 4.660e-9
Identity = 24/57 (42.11%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   13 LLDPTDDWHARVMWKHACSKGVSGTPFYFVNDVLINGPSTE--QGWKALLDPLVQDN 177
            + DP  D  ARV WK+ C++G+SGTP + VNDV+++  ++   + W+ ++DPL+ DN
Sbjct:  156 MADPNIDEDARVGWKYTCTRGISGTPMFTVNDVIVSADASWGLEEWRKVIDPLLGDN 212          
BLAST of mRNA_M-pyrifera_M_contig118419.3813.1 vs. uniprot
Match: A0A024USG4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024USG4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.660e-8
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 1
Query:   31 DWHARVMWKHACSKGVSGTPFYFVNDVLINGPSTE--QGWKALLDPLV 168
            D   R  WKHAC++G+SGTP Y +NDVLIN   T     W A L+PL+
Sbjct:   39 DSDTRTEWKHACTRGISGTPQYLLNDVLINAEPTWTFDDWMAFLEPLL 86          
BLAST of mRNA_M-pyrifera_M_contig118419.3813.1 vs. uniprot
Match: UPI00148A8737 (uncharacterized protein LOC105341287 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A8737)

HSP 1 Score: 57.4 bits (137), Expect = 3.260e-8
Identity = 22/57 (38.60%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   13 LLDPTDDWHARVMWKHACSKGVSGTPFYFVNDVLINGPSTE--QGWKALLDPLVQDN 177
            + DP  D  ARV WK+ C++G+SGTP + +NDV++   ++   + W+ ++DPL+ +N
Sbjct:  156 MADPLVDEDARVEWKYTCTRGISGTPMFTINDVIVAASASWSLEDWRKVIDPLLSNN 212          
BLAST of mRNA_M-pyrifera_M_contig118419.3813.1 vs. uniprot
Match: K1PPX8_CRAGI (Eppin n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1PPX8_CRAGI)

HSP 1 Score: 57.4 bits (137), Expect = 4.570e-8
Identity = 22/57 (38.60%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   13 LLDPTDDWHARVMWKHACSKGVSGTPFYFVNDVLINGPSTE--QGWKALLDPLVQDN 177
            + DP  D  ARV WK+ C++G+SGTP + +NDV++   ++   + W+ ++DPL+ +N
Sbjct:  156 MADPLVDEDARVEWKYTCTRGISGTPMFTINDVIVAADASWSLEDWRKVIDPLLSNN 212          
BLAST of mRNA_M-pyrifera_M_contig118419.3813.1 vs. uniprot
Match: A0A816QS37_9BILA (Hypothetical protein n=3 Tax=Rotaria TaxID=231623 RepID=A0A816QS37_9BILA)

HSP 1 Score: 55.8 bits (133), Expect = 1.270e-7
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   31 DWHARVMWKHACSKGVSGTPFYFVNDVLINGPSTEQ--GWKALLDPLVQDNDDI 186
            ++  RV WK+ACS+GV GTP +F+N V+I+   T     WK+++DP++  ND +
Sbjct:  164 NFETRVSWKYACSRGVLGTPTFFINGVVISADPTWSLNDWKSVIDPILGSNDKV 217          
BLAST of mRNA_M-pyrifera_M_contig118419.3813.1 vs. uniprot
Match: UPI0010A32865 (uncharacterized protein LOC114717665 n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A32865)

HSP 1 Score: 55.5 bits (132), Expect = 1.460e-7
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    1 ISDALLDPTDDWHARVMWKHACSKGVSGTPFYFVNDVLINGPSTE---QGWKALLDPLVQDN 177
            I     D   D H RV +K+A S+GVS TPF++VN  L+ G  +    +GW+ ++DPLV  N
Sbjct:  162 IKSGFNDRKTDLHTRVSFKYAASRGVSETPFFYVNGFLLPGTGSALDYKGWRKVIDPLVGSN 223          
BLAST of mRNA_M-pyrifera_M_contig118419.3813.1 vs. uniprot
Match: UPI001CF49BA6 (uncharacterized protein LOC122957631 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF49BA6)

HSP 1 Score: 55.1 bits (131), Expect = 1.650e-7
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    1 ISDALLDPTDDWHARVMWKHACSKGVSGTPFYFVNDVLING--PSTEQG-WKALLDPLV 168
            I D L +       R+ WK+ CS+ VSGTPF+F+ND+ +    PS   G WK L+DPL+
Sbjct:  152 IKDGLSNTDYYQDTRISWKYGCSRTVSGTPFFFLNDIFVTEATPSWSVGDWKKLIDPLL 210          
BLAST of mRNA_M-pyrifera_M_contig118419.3813.1 vs. uniprot
Match: A0A8J1TNN7_OWEFU (Ofus.G043352 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TNN7_OWEFU)

HSP 1 Score: 54.3 bits (129), Expect = 2.780e-7
Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   19 DPTDDWHARVMWKHACSKGVSGTPFYFVNDVLINGPSTEQG-WKALLDPLVQ 171
            D T + +ARV WK+ CS+GV+GTP +FVN V ++  S ++G W + +D L++
Sbjct:  145 DDTLENNARVAWKYGCSRGVAGTPTFFVNGVFVDAASWDEGKWHSFIDELLK 196          
BLAST of mRNA_M-pyrifera_M_contig118419.3813.1 vs. uniprot
Match: A0A7J7P4F8_9MAGN (Thioredoxin-like_fold domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7P4F8_9MAGN)

HSP 1 Score: 54.3 bits (129), Expect = 3.450e-7
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    1 ISDALLDPTDDWHARVMWKHACSKGVSGTPFYFVNDVLIN--GPSTE-QGWKALLDPLVQD 174
            +     D   D   RV +K+ CS+GV GTPF+FVN  L+   G + + +GWK+++DPL+ D
Sbjct:  159 VESGFSDRQTDLATRVSFKYGCSRGVYGTPFFFVNGFLLPDAGDAIDYKGWKSIIDPLIAD 219          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118419.3813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812WJM1_9DINO2.650e-1050.00Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A8B8BLE9_CRAVI4.660e-942.11uncharacterized protein LOC111111455 n=2 Tax=Crass... [more]
A0A024USG4_9STRA1.660e-852.08Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
UPI00148A87373.260e-838.60uncharacterized protein LOC105341287 n=1 Tax=Crass... [more]
K1PPX8_CRAGI4.570e-838.60Eppin n=1 Tax=Crassostrea gigas TaxID=29159 RepID=... [more]
A0A816QS37_9BILA1.270e-742.59Hypothetical protein n=3 Tax=Rotaria TaxID=231623 ... [more]
UPI0010A328651.460e-741.94uncharacterized protein LOC114717665 n=2 Tax=Proso... [more]
UPI001CF49BA61.650e-744.07uncharacterized protein LOC122957631 n=1 Tax=Acrop... [more]
A0A8J1TNN7_OWEFU2.780e-744.23Ofus.G043352 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A7J7P4F8_9MAGN3.450e-740.98Thioredoxin-like_fold domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118419contigM-pyrifera_M_contig118419:310..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.9312496-CDS-M-pyrifera_M_contig118419:309..4981622815703.9312496-CDS-M-pyrifera_M_contig118419:309..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118419 310..498 -
1692277530.1243591-CDS-M-pyrifera_M_contig118419:309..4981692277530.1243591-CDS-M-pyrifera_M_contig118419:309..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118419 310..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118419.3813.1prot_M-pyrifera_M_contig118419.3813.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118419 310..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118419.3813.1

>prot_M-pyrifera_M_contig118419.3813.1 ID=prot_M-pyrifera_M_contig118419.3813.1|Name=mRNA_M-pyrifera_M_contig118419.3813.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
ISDALLDPTDDWHARVMWKHACSKGVSGTPFYFVNDVLINGPSTEQGWKA
LLDPLVQDNDDI*
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mRNA from alignment at M-pyrifera_M_contig118419:310..498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118419.3813.1 ID=mRNA_M-pyrifera_M_contig118419.3813.1|Name=mRNA_M-pyrifera_M_contig118419.3813.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig118419:310..498- (Macrocystis pyrifera P11B4 male)
ATTTCCGACGCGCTGCTGGACCCCACCGACGACTGGCACGCGCGCGTGAT GTGGAAGCACGCGTGTTCCAAGGGCGTGTCAGGGACTCCCTTCTATTTCG TCAACGACGTGCTCATCAATGGCCCAAGCACGGAGCAAGGATGGAAGGCC CTCCTCGACCCTCTCGTCCAAGACAATGACGACATCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118419:310..498-

>mRNA_M-pyrifera_M_contig118419.3813.1 ID=mRNA_M-pyrifera_M_contig118419.3813.1|Name=mRNA_M-pyrifera_M_contig118419.3813.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig118419:310..498- (Macrocystis pyrifera P11B4 male)
ATTTCCGACGCGCTGCTGGACCCCACCGACGACTGGCACGCGCGCGTGAT
GTGGAAGCACGCGTGTTCCAAGGGCGTGTCAGGGACTCCCTTCTATTTCG
TCAACGACGTGCTCATCAATGGCCCAAGCACGGAGCAAGGATGGAAGGCC
CTCCTCGACCCTCTCGTCCAAGACAATGACGACATCTAAATTTCCGACGC
GCTGCTGGACCCCACCGACGACTGGCACGCGCGCGTGATGTGGAAGCACG
CGTGTTCCAAGGGCGTGTCAGGGACTCCCTTCTATTTCGTCAACGACGTG
CTCATCAATGGCCCAAGCACGGAGCAAGGATGGAAGGCCCTCCTCGACCC
TCTCGTCCAAGACAATGACGACATCTAA
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