mRNA_M-pyrifera_M_contig118131.3755.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A7W0KXX1_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KXX1_9ACTN) HSP 1 Score: 114 bits (285), Expect = 3.340e-30 Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 1
Query: 1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAP--ARSVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 300
+AYL+RSVLN+A + S + RRRRE VVAL +P A + PE +DA +AL LSP+QRAV++L YWEDQT A IA LLD+SEG+VRK LAR RD+LR+ +
Sbjct: 61 RAYLYRSVLNRALSHRRSTASRRRRETVVALSSPSIAPAASPEAELDAHKALAALSPQQRAVVHLTYWEDQTPAQIAGLLDVSEGTVRKQLARARDHLREIL 162
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A7W0T608_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0T608_9ACTN) HSP 1 Score: 96.7 bits (239), Expect = 3.140e-23 Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query: 1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 300
+AYL+R+VLN AS+ + R RER VA + DP S+DA+RAL LSP+QRA++YLAYW+D TA IADLL + EG+VRK LAR R LR +
Sbjct: 67 RAYLYRAVLNTASSHQRRAASRHTRERRVA--SGVIHGDPPSSLDAERALVGLSPQQRAIVYLAYWDDLTAPQIADLLGVGEGTVRKQLARARQRLRSVL 164
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A524MTB4_9ACTN (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A524MTB4_9ACTN) HSP 1 Score: 87.0 bits (214), Expect = 1.500e-19 Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query: 1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 300
+AYL R+V N A+ S RR RR+ +A PA +V P+ +D +RA+ +LS QR VIY YWED + DIA LL ++ G+VR+HL R R +LRK +
Sbjct: 60 RAYLMRAVANHANDLRRSRERRWRRD--LAAVGPASTVGPDTFLDVRRAVSSLSLAQRTVIYFVYWEDLSERDIATLLQVAPGTVRRHLVRARAHLRKAL 157
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A7K1BAT8_9ACTN (Sigma-70 family RNA polymerase sigma factor n=4 Tax=root TaxID=1 RepID=A0A7K1BAT8_9ACTN) HSP 1 Score: 86.7 bits (213), Expect = 2.630e-19 Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 4 AYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 300
AYL V+N A+ S RR RE SVDP ++D +RAL LSP+QRA+ YL YWED T D+A LD+SEG+VR+ LAR +D LR+ +
Sbjct: 68 AYLTLVVVNGATDRVRSDRRRTDREERAGRLMVTSSVDPTNALDVRRALDRLSPQQRAIAYLVYWEDMTIPDVAHRLDVSEGTVRRQLARAKDRLREVL 166
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A350XRT4_9ACTN (Sigma70_r4_2 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A350XRT4_9ACTN) HSP 1 Score: 86.3 bits (212), Expect = 2.650e-19 Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query: 1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 300
+A LFR+VL +A + S +RRR RE A+ A +VD EP+ + +A+R LSP+QRAV++ AYW+D IADLL +S+G+VR+ LAR R LR+ +
Sbjct: 54 RALLFRAVLFEAHNLHRSAARRRVREEKAAVPV-AVTVDHEPAPEVWQAVRGLSPQQRAVVFFAYWQDLDVTAIADLLGVSDGTVRRQLARARGRLREVL 152
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A539E0E1_9ACTN (Putative RNA polymerase ECF subfamily sigma factor n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E0E1_9ACTN) HSP 1 Score: 83.6 bits (205), Expect = 3.300e-18 Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 1
Query: 1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPAR--SVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 300
+AYLFR+V ++A S SRRRRR+ A P R SV +VDA++ + LS +QR +++L YW DQT ADIA +L + EG++RK LAR R LR+ +
Sbjct: 57 RAYLFRAVHHRAIDHQRSRSRRRRRD---ASLQPQRHDSVGQPAAVDARKVMAALSVQQRTIVFLTYWADQTPADIAGVLAVGEGTIRKQLARARARLREVL 155
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A7Y1US40_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1US40_9ACTN) HSP 1 Score: 83.2 bits (204), Expect = 4.030e-18 Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 1
Query: 1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEP-SVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 300
+AYL+RSVLNQA + + + RRR RE A+ S+ P P +D RA+ LS +QRA ++L YWED + ++A L ISEGSV++HLAR R L++ +
Sbjct: 52 RAYLYRSVLNQARSHHRTTVRRRIREHATAV---PDSITPVPIDIDVLRAIDKLSMQQRASVFLTYWEDLSPTEVAARLKISEGSVKRHLARARSRLKELL 149
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A7Y3GHN9_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y3GHN9_9ACTN) HSP 1 Score: 81.3 bits (199), Expect = 3.090e-17 Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query: 1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 300
+AYL+RSVLNQA + + S RRR RE A P R +D RA+ LS +QRA ++L YW+D A +A L ISEGSV++HLAR R L++ +
Sbjct: 65 RAYLYRSVLNQAHSHHRSTLRRRIREHSAA--GPGRVEQSPVDLDVLRAVDKLSMQQRACVFLTYWDDLAPAQVAARLGISEGSVKRHLARARARLKELL 162
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A349B828_9ACTN (Sigma70_r4_2 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B828_9ACTN) HSP 1 Score: 79.7 bits (195), Expect = 1.020e-16 Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1
Query: 4 AYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQ--RALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTMA 303
AY R+V+N+A + + S RR RE VA R R V+ PS++ + RA+ LS +QR V YLAYW D ++IAD+L ISEG+VR+ LAR R LR+T++
Sbjct: 56 AYWVRAVVNEARSTHRSTLRRLTREEAVARR-DHRFVEDAPSLNPEVVRAVAGLSLQQRTVTYLAYWRDLPVSEIADVLAISEGAVRRQLARARSKLRRTLS 156
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Match: A0A2H6HH45_9BACT (RNA polymerase sigma-E factor n=1 Tax=bacterium BMS3Bbin02 TaxID=2005725 RepID=A0A2H6HH45_9BACT) HSP 1 Score: 79.3 bits (194), Expect = 1.550e-16 Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query: 1 KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQRALRTLSPKQRAVIYLAYWEDQTAADIADLLDISEGSVRKHLARGRDNLRKTM 300
++YL ++V N+A F +RR RE V + + + P V A A+ LS +QRA +YLAYWED T IAD L IS GSVR+HLAR R++LR+ +
Sbjct: 58 RSYLHQAVANEARNFRRGETRRHDRETRVPTASVSYPREVHPEVRA--AVARLSVRQRATVYLAYWEDMTDHMIADYLGISAGSVRRHLARARNHLRRAL 155 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118131.3755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig118131.3755.1 >prot_M-pyrifera_M_contig118131.3755.1 ID=prot_M-pyrifera_M_contig118131.3755.1|Name=mRNA_M-pyrifera_M_contig118131.3755.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp KAYLFRSVLNQASTFNTSHSRRRRRERVVALRAPARSVDPEPSVDAQRALback to top mRNA from alignment at M-pyrifera_M_contig118131:241..549- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig118131.3755.1 ID=mRNA_M-pyrifera_M_contig118131.3755.1|Name=mRNA_M-pyrifera_M_contig118131.3755.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig118131:241..549- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig118131:241..549- >mRNA_M-pyrifera_M_contig118131.3755.1 ID=mRNA_M-pyrifera_M_contig118131.3755.1|Name=mRNA_M-pyrifera_M_contig118131.3755.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig118131:241..549- (Macrocystis pyrifera P11B4 male)back to top |