mRNA_M-pyrifera_M_contig11806.3750.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11806.3750.1
Unique NamemRNA_M-pyrifera_M_contig11806.3750.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11806.3750.1 vs. uniprot
Match: D8LN55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN55_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.430e-11
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = -2 
Query: 1083 DTGTRAIVAGLASASSEIMLASSLNGKSHRGDQDAYRCQKVYSGYIHLIAQWREKVMGTTAEGVYRLFPL 1292
            D+G RA V+GLA ASS++M+ SSLN    +   DAYRC+K YSGYI LI +WRE+++    E V R+FP 
Sbjct:  367 DSGVRAFVSGLAVASSQVMIGSSLNDPRTKDIPDAYRCEKPYSGYITLITEWREEILHKEPETVVRMFPF 436
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BLAST of mRNA_M-pyrifera_M_contig11806.3750.1 vs. uniprot
Match: A0A6H5JCA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.500e-11
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = -2 
Query: 1083 DTGTRAIVAGLASASSEIMLASSLNGKSHRGDQDAYRCQKVYSGYIHLIAQWREKVMGTTAEGVYRLFPL 1292
            D+G RA V+GLA ASS++M+ SSLN    +   DAYRC+K YSGYI LI +WRE+++    E V R+FP 
Sbjct:  492 DSGVRAFVSGLAVASSQVMIGSSLNDPRTKDILDAYRCEKPYSGYITLITEWREEILHKEPETVVRMFPF 561
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11806.3750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN55_ECTSI1.430e-1152.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCA8_9PHAE2.500e-1152.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11806contigM-pyrifera_M_contig11806:449..1741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1293
Cds size762
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11806.3750.1prot_M-pyrifera_M_contig11806.3750.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11806 545..1306 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.4464064-UTR-M-pyrifera_M_contig11806:448..5441622815700.4464064-UTR-M-pyrifera_M_contig11806:448..544Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11806 449..544 +
1692277528.3327289-UTR-M-pyrifera_M_contig11806:448..5441692277528.3327289-UTR-M-pyrifera_M_contig11806:448..544Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11806 449..544 +
1622815700.4763713-UTR-M-pyrifera_M_contig11806:1306..17411622815700.4763713-UTR-M-pyrifera_M_contig11806:1306..1741Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11806 1307..1741 +
1692277528.3526049-UTR-M-pyrifera_M_contig11806:1306..17411692277528.3526049-UTR-M-pyrifera_M_contig11806:1306..1741Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11806 1307..1741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.4630067-CDS-M-pyrifera_M_contig11806:544..13061622815700.4630067-CDS-M-pyrifera_M_contig11806:544..1306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11806 545..1306 +
1692277528.3445315-CDS-M-pyrifera_M_contig11806:544..13061692277528.3445315-CDS-M-pyrifera_M_contig11806:544..1306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11806 545..1306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11806.3750.1

>prot_M-pyrifera_M_contig11806.3750.1 ID=prot_M-pyrifera_M_contig11806.3750.1|Name=mRNA_M-pyrifera_M_contig11806.3750.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=254bp
MGLGPVVRRNMFQKFENHTDPMLIFGSHPTPRPESSKLNRNGESQLAVGR
AYKLTDSTPTAANMRPNRQTKSHTSRSLRRGCKKNSLLQLQHKRAQDFAA
PINLQHPSCYLLYFAKLFFSHGTSTSMDFRIPYVIHARFFVLQAARSSSS
VLCTFHPNRCYGSKDGSPHFPHSRIFSTLKLPNIVESERGFQDVRYTCNR
YSNLTCKIVYIIMYQVSDLVYTFCLNQAGPYLRDLIKNVCYPYRSSVQHQ
LLL*
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mRNA from alignment at M-pyrifera_M_contig11806:449..1741+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11806.3750.1 ID=mRNA_M-pyrifera_M_contig11806.3750.1|Name=mRNA_M-pyrifera_M_contig11806.3750.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at M-pyrifera_M_contig11806:449..1741+ (Macrocystis pyrifera P11B4 male)
GTGAATATCCTCGAGTTGACAAGGATCGTCCCCCGCGCTTCAAGTTCCGC
GAGGAAACTAGGCAAAGAGGTCGCAAGGGCTGATAATGTAACTGTTATGG
GCTTAGGACCAGTAGTTCGTCGAAACATGTTTCAAAAGTTTGAGAACCAC
ACGGACCCCATGCTAATATTTGGCTCTCATCCCACACCTCGACCCGAGTC
CTCCAAGCTGAACCGGAATGGAGAATCACAACTGGCCGTCGGCAGGGCAT
ACAAGCTCACGGATTCCACGCCGACGGCCGCAAACATGAGGCCAAATCGA
CAAACAAAAAGCCATACCTCGAGATCCTTGCGACGAGGCTGCAAGAAAAA
CTCACTGCTGCAACTACAGCATAAGCGAGCTCAAGACTTTGCGGCACCAA
TCAACTTGCAGCACCCATCCTGCTATTTACTATACTTTGCGAAACTCTTC
TTTTCGCACGGTACGAGCACCAGCATGGACTTCAGAATCCCTTACGTAAT
CCACGCAAGGTTTTTCGTCTTGCAAGCGGCACGGTCATCGTCAAGCGTCT
TGTGCACTTTCCACCCAAACCGGTGCTACGGTTCGAAAGACGGGTCGCCA
CATTTTCCTCACTCACGGATCTTCTCCACTCTCAAACTACCCAATATCGT
TGAATCCGAAAGAGGTTTTCAAGATGTTCGCTATACTTGTAACAGATACT
CGAACCTAACGTGCAAGATTGTGTATATTATTATGTACCAGGTATCGGAC
TTAGTATACACCTTTTGTTTAAACCAGGCCGGCCCCTATTTGAGGGATCT
AATAAAAAATGTGTGCTATCCATATCGTAGCTCGGTACAACATCAACTAC
TACTGTAGGCAACTGCTGTAGGTCTTTTCACCACCATAAGCGCATGCCTG
CGCTGCCACCTTCTAAGGATGTGCCGACACTACACCCGAACAAAGCCGCC
TATCGTCAATCGGCCCCCTTTCGCTATTGACTACTGTAGTGTGTTGCATC
GCTTTTATCACTGGGGCTTGTCGAACCGAATATCGTCCCTTTTGTTTGTC
GCGAGTGAGGTCCCGGCCTACTCGAAGTCCCCGAGAGGGAAGAGACGGTA
TACGCCTTCTGCAGTCGTACCCATGACCTTTTCCCGCCACTGAGCAATAA
GGTGGATGTAGCCCGAATATACTTTCTGACAGCGGTAGGCGTCTTGGTCA
CCTCTGTGCGACTTGCCGTTGAGCGACGAGGCTAGCATAATCTCGGAGGA
TGCCGAGGCAAGACCGGCGACGATCGCTCTAGTCCCTGTGTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11806:449..1741+

>mRNA_M-pyrifera_M_contig11806.3750.1 ID=mRNA_M-pyrifera_M_contig11806.3750.1|Name=mRNA_M-pyrifera_M_contig11806.3750.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1524bp|location=Sequence derived from alignment at M-pyrifera_M_contig11806:449..1741+ (Macrocystis pyrifera P11B4 male)
ATGGGCTTAGGACCAGTAGTTCGTCGAAACATGTTTCAAAAGTTTGAGAA
CCACACGGACCCCATGCTAATATTTGGCTCTCATCCCACACCTCGACCCG
AGTCCTCCAAGCTGAACCGGAATGGAGAATCACAACTGGCCGTCGGCAGG
GCATACAAGCTCACGGATTCCACGCCGACGGCCGCAAACATGAGGCCAAA
TCGACAAACAAAAAGCCATACCTCGAGATCCTTGCGACGAGGCTGCAAGA
AAAACTCACTGCTGCAACTACAGCATAAGCGAGCTCAAGACTTTGCGGCA
CCAATCAACTTGCAGCACCCATCCTGCTATTTACTATACTTTGCGAAACT
CTTCTTTTCGCACGGTACGAGCACCAGCATGGACTTCAGAATCCCTTACG
TAATCCACGCAAGGTTTTTCGTCTTGCAAGCGGCACGGTCATCGTCAAGC
GTCTTGTGCACTTTCCACCCAAACCGGTGCTACGGTTCGAAAGACGGGTC
GCCACATTTTCCTCACTCACGGATCTTCTCCACTCTCAAACTACCCAATA
TCGTTGAATCCGAAAGAGGTTTTCAAGATGTTCGCTATACTTGTAACAGA
TACTCGAACCTAACGTGCAAGATTGTGTATATTATTATGTACCAGGTATC
GGACTTAGTATACACCTTTTGTTTAAACCAGGCCGGCCCCTATTTGAGGG
ATCTAATAAAAAATGTGTGCTATCCATATCGTAGCTCGGTACAACATCAA
CTACTACTGTAGATGGGCTTAGGACCAGTAGTTCGTCGAAACATGTTTCA
AAAGTTTGAGAACCACACGGACCCCATGCTAATATTTGGCTCTCATCCCA
CACCTCGACCCGAGTCCTCCAAGCTGAACCGGAATGGAGAATCACAACTG
GCCGTCGGCAGGGCATACAAGCTCACGGATTCCACGCCGACGGCCGCAAA
CATGAGGCCAAATCGACAAACAAAAAGCCATACCTCGAGATCCTTGCGAC
GAGGCTGCAAGAAAAACTCACTGCTGCAACTACAGCATAAGCGAGCTCAA
GACTTTGCGGCACCAATCAACTTGCAGCACCCATCCTGCTATTTACTATA
CTTTGCGAAACTCTTCTTTTCGCACGGTACGAGCACCAGCATGGACTTCA
GAATCCCTTACGTAATCCACGCAAGGTTTTTCGTCTTGCAAGCGGCACGG
TCATCGTCAAGCGTCTTGTGCACTTTCCACCCAAACCGGTGCTACGGTTC
GAAAGACGGGTCGCCACATTTTCCTCACTCACGGATCTTCTCCACTCTCA
AACTACCCAATATCGTTGAATCCGAAAGAGGTTTTCAAGATGTTCGCTAT
ACTTGTAACAGATACTCGAACCTAACGTGCAAGATTGTGTATATTATTAT
GTACCAGGTATCGGACTTAGTATACACCTTTTGTTTAAACCAGGCCGGCC
CCTATTTGAGGGATCTAATAAAAAATGTGTGCTATCCATATCGTAGCTCG
GTACAACATCAACTACTACTGTAG
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