mRNA_M-pyrifera_M_contig118016.3742.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118016.3742.1
Unique NamemRNA_M-pyrifera_M_contig118016.3742.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig118016.3742.1 vs. uniprot
Match: A0A5A8C7Y3_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C7Y3_CAFRO)

HSP 1 Score: 77.0 bits (188), Expect = 1.830e-15
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:   37 VIYNGRDPDEGKKKLRGVGKRALMAMNNHAEQMGHCILAVFLCLLSRGGMDSTSWTVAGVAWAHSATRFLHLVCFLADVEWLRSLSFGIGLILNYVLWILIFI 345
            V ++ +D    K  LRG GKRA++AMNNHAEQ+    LA  L +  R G+  T W V+GV    +  R  HL C+LAD++ LRSLSF    +L   L++++F+
Sbjct:   50 VAFDNKDQTASKAGLRGWGKRAMLAMNNHAEQLPQFGLAALLNVAVRSGV--TPWAVSGVMAGVAVFRGAHLACYLADLDGLRSLSFLGSSLLTLALYVMVFV 150
[Close]
BLAST of mRNA_M-pyrifera_M_contig118016.3742.1 vs. uniprot
Match: A0A812PKR9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PKR9_9DINO)

HSP 1 Score: 77.0 bits (188), Expect = 6.400e-15
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:   37 VIYNGRDPDEGKKKLRGVGKRALMAMNNHAEQMGHCILAVFLCLLSRGGMDSTSWTVAGVAWAHSATRFLHLVCFLADVEWLRSLSFGIGLILNYVLWILIFI 345
            V ++ +D    K  LRG GKRA++AMNNHAEQ+    LA  L +  R G+  T W V+GV    +  R  HL C+LAD++ LRSLSF    +L   L++++F+
Sbjct:  111 VAFDNKDQTASKAGLRGWGKRAMLAMNNHAEQLPQFGLAALLNVAVRSGV--TPWAVSGVMAGVAVFRGAHLACYLADLDGLRSLSFLGSSLLTLALYVMVFV 211
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118016.3742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8C7Y3_CAFRO1.830e-1542.72Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A812PKR9_9DINO6.400e-1542.72Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118016contigM-pyrifera_M_contig118016:156..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.972092-CDS-M-pyrifera_M_contig118016:155..5121622815699.972092-CDS-M-pyrifera_M_contig118016:155..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118016 156..512 -
1692277528.182442-CDS-M-pyrifera_M_contig118016:155..5121692277528.182442-CDS-M-pyrifera_M_contig118016:155..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118016 156..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118016.3742.1prot_M-pyrifera_M_contig118016.3742.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118016 156..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118016.3742.1

>prot_M-pyrifera_M_contig118016.3742.1 ID=prot_M-pyrifera_M_contig118016.3742.1|Name=mRNA_M-pyrifera_M_contig118016.3742.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
VGSGTKEGGGGKVIYNGRDPDEGKKKLRGVGKRALMAMNNHAEQMGHCIL
AVFLCLLSRGGMDSTSWTVAGVAWAHSATRFLHLVCFLADVEWLRSLSFG
IGLILNYVLWILIFIPSV*
back to top

mRNA from alignment at M-pyrifera_M_contig118016:156..512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118016.3742.1 ID=mRNA_M-pyrifera_M_contig118016.3742.1|Name=mRNA_M-pyrifera_M_contig118016.3742.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig118016:156..512- (Macrocystis pyrifera P11B4 male)
GTGGGAAGTGGTACGAAGGAAGGTGGTGGTGGAAAGGTTATTTACAATGG
AAGAGACCCCGACGAAGGGAAGAAAAAGCTACGTGGAGTTGGAAAAAGGG
CCCTTATGGCCATGAACAACCATGCAGAGCAAATGGGCCACTGCATCCTT
GCCGTCTTCTTGTGTCTTTTGAGCAGAGGTGGGATGGACAGTACATCATG
GACTGTAGCAGGAGTTGCTTGGGCGCATTCCGCCACTCGCTTCCTCCATC
TCGTGTGCTTCCTTGCAGATGTAGAATGGCTTCGTTCTCTCTCCTTTGGA
ATTGGTCTCATCCTCAACTATGTCCTCTGGATCCTCATTTTCATCCCATC
TGTCTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig118016:156..512-

>mRNA_M-pyrifera_M_contig118016.3742.1 ID=mRNA_M-pyrifera_M_contig118016.3742.1|Name=mRNA_M-pyrifera_M_contig118016.3742.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig118016:156..512- (Macrocystis pyrifera P11B4 male)
GTGGGAAGTGGTACGAAGGAAGGTGGTGGTGGAAAGGTTATTTACAATGG
AAGAGACCCCGACGAAGGGAAGAAAAAGCTACGTGGAGTTGGAAAAAGGG
CCCTTATGGCCATGAACAACCATGCAGAGCAAATGGGCCACTGCATCCTT
GCCGTCTTCTTGTGTCTTTTGAGCAGAGGTGGGATGGACAGTACATCATG
GACTGTAGCAGGAGTTGCTTGGGCGCATTCCGCCACTCGCTTCCTCCATC
TCGTGTGCTTCCTTGCAGATGTAGAATGGCTTCGTTCTCTCTCCTTTGGA
ATTGGTCTCATCCTCAACTATGTCCTCTGGATCCTCATTTTCATCCCATC
TGTCTAAGTGGGAAGTGGTACGAAGGAAGGTGGTGGTGGAAAGGTTATTT
ACAATGGAAGAGACCCCGACGAAGGGAAGAAAAAGCTACGTGGAGTTGGA
AAAAGGGCCCTTATGGCCATGAACAACCATGCAGAGCAAATGGGCCACTG
CATCCTTGCCGTCTTCTTGTGTCTTTTGAGCAGAGGTGGGATGGACAGTA
CATCATGGACTGTAGCAGGAGTTGCTTGGGCGCATTCCGCCACTCGCTTC
CTCCATCTCGTGTGCTTCCTTGCAGATGTAGAATGGCTTCGTTCTCTCTC
CTTTGGAATTGGTCTCATCCTCAACTATGTCCTCTGGATCCTCATTTTCA
TCCCATCTGTCTAA
back to top