mRNA_M-pyrifera_M_contig117941.3711.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig117941.3711.1
Unique Name	mRNA_M-pyrifera_M_contig117941.3711.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig117941.3711.1 vs. uniprot
Match: A0A5A8E3K0_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E3K0_CAFRO)

HSP 1 Score: 57.8 bits (138), Expect = 4.700e-8
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1

Query:   58 PGAPARVDLEPTSPSTARVSFAPPASDGGAQVTSYRVEWDPEGGAREVQTV 210
            PG PA +D+   S S+   + APPASDGGA VTSYR EWD   GAREVQTV
Sbjct:   25 PGPPASLDVTRLSGSSLLATAAPPASDGGAGVTSYRFEWDTAPGAREVQTV 75

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BLAST of mRNA_M-pyrifera_M_contig117941.3711.1 vs. uniprot
Match: A0A5A8EDT7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EDT7_CAFRO)

HSP 1 Score: 57.8 bits (138), Expect = 4.700e-8
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1

Query:   58 PGAPARVDLEPTSPSTARVSFAPPASDGGAQVTSYRVEWDPEGGAREVQTV 210
            PG PA +D+   S S+   + APPASDGGA VTSYR EWD   GAREVQTV
Sbjct:   25 PGPPASLDVTRLSGSSLLATAAPPASDGGAGVTSYRFEWDTAPGAREVQTV 75

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BLAST of mRNA_M-pyrifera_M_contig117941.3711.1 vs. uniprot
Match: A0A5A8DUD1_CAFRO (Uncharacterized protein n=11 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DUD1_CAFRO)

HSP 1 Score: 57.8 bits (138), Expect = 4.700e-8
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1

Query:   58 PGAPARVDLEPTSPSTARVSFAPPASDGGAQVTSYRVEWDPEGGAREVQTV 210
            PG PA +D+   S S+   + APPASDGGA VTSYR EWD   GAREVQTV
Sbjct:   25 PGPPASLDVTRLSGSSLLATAAPPASDGGAGVTSYRFEWDTAPGAREVQTV 75

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BLAST of mRNA_M-pyrifera_M_contig117941.3711.1 vs. uniprot
Match: A0A2P4XXY4_9STRA (Titin isoform N2-B n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XXY4_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.010e-7
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 1

Query:   55 VPGAPARVDLEPTSPSTARVSFAPPASDGGAQVTSYRVEWDPEGGAREVQTV 210
            VP AP  V L    P    V + PPA+DGGA V++Y VEWDP+ G REVQ V
Sbjct:   24 VPSAPLNVALGVLGPDALAVEWEPPATDGGAPVSAYLVEWDPDPGVREVQVV 75

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BLAST of mRNA_M-pyrifera_M_contig117941.3711.1 vs. uniprot
Match: A0A024UP14_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UP14_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.240e-7
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1

Query:   43 SPTTVPGAPARVDLEPTSPSTARVSFAPPASDGGAQVTSYRVEWDPEGGAREVQTV 210
            +P TVP +P  V L     +   VSFAPP SDGG+ +++Y V+WDP  G +EVQTV
Sbjct:   29 APQTVPTSPTNVQLSVVDQNDLFVSFAPPLSDGGSTISAYEVDWDPNPGVQEVQTV 84

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BLAST of mRNA_M-pyrifera_M_contig117941.3711.1 vs. uniprot
Match: A0A485LG67_9STRA (Aste57867_20656 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LG67_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.070e-7
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1

Query:   52 TVPGAPARVDLEPTSPSTARVSFAPPASDGGAQVTSYRVEWDPEGGAREVQTV 210
            TVPG PA V L     +   VSF PP SDGG+ +++Y V+WDP  G +EVQTV
Sbjct:   31 TVPGPPATVQLSVLDQNDLFVSFTPPLSDGGSTISAYEVDWDPNPGVQEVQTV 83

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BLAST of mRNA_M-pyrifera_M_contig117941.3711.1 vs. uniprot
Match: A0A6G0XJZ2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJZ2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.840e-7
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 1

Query:   52 TVPGAPARVDLEPTSPSTARVSFAPPASDGGAQVTSYRVEWDPEGGAREVQTV 210
            TVP +P  V L         VSF+PP SDGG+ +++Y VEWDP  G +EVQTV
Sbjct:   15 TVPSSPTNVQLSVVDQHDLFVSFSPPLSDGGSSISAYEVEWDPNPGVQEVQTV 67

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BLAST of mRNA_M-pyrifera_M_contig117941.3711.1 vs. uniprot
Match: A0A3R7NFQ5_9STRA (Fibronectin type-III domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NFQ5_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.040e-6
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 1

Query:   55 VPGAPARVDLEPTSPSTARVSFAPPASDGGAQVTSYRVEWDPEGGAREVQTV 210
            VP  P  V L    P    VS+ PP SDGGA V++Y VEWDP+ GAREVQ V
Sbjct:   26 VPSPPLNVALGVLGPDALAVSWEPPISDGGAPVSAYLVEWDPDPGAREVQVV 77

[Close]

BLAST of mRNA_M-pyrifera_M_contig117941.3711.1 vs. uniprot
Match: A0A2P4YJ24_9STRA (Fibronectin type-III domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJ24_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.350e-6
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 1

Query:   55 VPGAPARVDLEPTSPSTARVSFAPPASDGGAQVTSYRVEWDPEGGAREVQTV 210
            VP AP  V L    P    V + PPA+DGGA V++Y VEWDP+ G REVQ V
Sbjct:   24 VPSAPLNVALGVLGPDALAVEWEPPATDGGAPVSAYLVEWDPDPGVREVQVV 75

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BLAST of mRNA_M-pyrifera_M_contig117941.3711.1 vs. uniprot
Match: A0A417Y4E2_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides immobilis TaxID=2049295 RepID=A0A417Y4E2_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 2.630e-6
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 1

Query:   40 PSPTTVPGAPARVDLEPTSPSTARVSFAPPASDGGAQVTSYRVEW-DPEGGA 192
            P+P T PGAP       TSP++ARVSF PPA+DGGA +TSY      P GGA
Sbjct:  229 PAPVTAPGAPTNAAATATSPTSARVSFNPPANDGGAAITSYTARCISPSGGA 280

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig117941.3711.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig117941.3711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20


Match Name	E-value	Identity	Description
A0A5A8E3K0_CAFRO	4.700e-8	62.75	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A5A8EDT7_CAFRO	4.700e-8	62.75	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A5A8DUD1_CAFRO	4.700e-8	62.75	Uncharacterized protein n=11 Tax=Cafeteria roenber...	[more]
A0A2P4XXY4_9STRA	1.010e-7	53.85	Titin isoform N2-B n=1 Tax=Phytophthora palmivora ...	[more]
A0A024UP14_9STRA	2.240e-7	50.00	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
A0A485LG67_9STRA	3.070e-7	52.83	Aste57867_20656 protein n=1 Tax=Aphanomyces stella...	[more]
A0A6G0XJZ2_9STRA	7.840e-7	50.94	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A3R7NFQ5_9STRA	1.040e-6	55.77	Fibronectin type-III domain-containing protein n=3...	[more]
A0A2P4YJ24_9STRA	1.350e-6	53.85	Fibronectin type-III domain-containing protein n=1...	[more]
A0A417Y4E2_9ACTN	2.630e-6	55.77	Uncharacterized protein n=1 Tax=Nocardioides immob...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig117941	contig	M-pyrifera_M_contig117941:341..550 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	210
Cds size	183
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815697.854135-UTR-M-pyrifera_M_contig117941:340..367	1622815697.854135-UTR-M-pyrifera_M_contig117941:340..367	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig117941 341..367 +
1692277527.1002414-UTR-M-pyrifera_M_contig117941:340..367	1692277527.1002414-UTR-M-pyrifera_M_contig117941:340..367	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig117941 341..367 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815697.86446-CDS-M-pyrifera_M_contig117941:367..550	1622815697.86446-CDS-M-pyrifera_M_contig117941:367..550	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig117941 368..550 +
1692277527.1106384-CDS-M-pyrifera_M_contig117941:367..550	1692277527.1106384-CDS-M-pyrifera_M_contig117941:367..550	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig117941 368..550 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig117941.3711.1	prot_M-pyrifera_M_contig117941.3711.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig117941 368..550 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig117941:341..550+
coding sequence from alignment at M-pyrifera_M_contig117941:341..550+

protein sequence of mRNA_M-pyrifera_M_contig117941.3711.1

>prot_M-pyrifera_M_contig117941.3711.1 ID=prot_M-pyrifera_M_contig117941.3711.1|Name=mRNA_M-pyrifera_M_contig117941.3711.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MAAEPSPTTVPGAPARVDLEPTSPSTARVSFAPPASDGGAQVTSYRVEWD
PEGGAREVQTV

mRNA from alignment at M-pyrifera_M_contig117941:341..550+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig117941.3711.1 ID=mRNA_M-pyrifera_M_contig117941.3711.1|Name=mRNA_M-pyrifera_M_contig117941.3711.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig117941:341..550+ (Macrocystis pyrifera P11B4 male)
CTGCTGGCGCTGCTTCTTGCCGTCGCCATGGCGGCGGAGCCGTCTCCTAC
CACCGTGCCGGGCGCGCCGGCGCGTGTGGATCTGGAGCCGACTTCGCCGT
CGACTGCGCGCGTGTCCTTCGCGCCGCCCGCTTCTGACGGCGGCGCGCAG
GTGACCAGCTACCGGGTAGAGTGGGACCCGGAAGGTGGTGCGCGCGAGGT
GCAGACGGTT

Coding sequence (CDS) from alignment at M-pyrifera_M_contig117941:341..550+

>mRNA_M-pyrifera_M_contig117941.3711.1 ID=mRNA_M-pyrifera_M_contig117941.3711.1|Name=mRNA_M-pyrifera_M_contig117941.3711.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig117941:341..550+ (Macrocystis pyrifera P11B4 male)
ATGGCGGCGGAGCCGTCTCCTACCACCGTGCCGGGCGCGCCGGCGCGTGT
GGATCTGGAGCCGACTTCGCCGTCGACTGCGCGCGTGTCCTTCGCGCCGC
CCGCTTCTGACGGCGGCGCGCAGGTGACCAGCTACCGGGTAGAGTGGGAC
CCGGAAGGTGGTGCGCGCGAGGTGCAGACGGTTATGGCGGCGGAGCCGTC
TCCTACCACCGTGCCGGGCGCGCCGGCGCGTGTGGATCTGGAGCCGACTT
CGCCGTCGACTGCGCGCGTGTCCTTCGCGCCGCCCGCTTCTGACGGCGGC
GCGCAGGTGACCAGCTACCGGGTAGAGTGGGACCCGGAAGGTGGTGCGCG
CGAGGTGCAGACGGTT