mRNA_M-pyrifera_M_contig1178.3677.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1178.3677.1
Unique NamemRNA_M-pyrifera_M_contig1178.3677.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1178.3677.1 vs. uniprot
Match: D7FVQ4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ4_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 6.340e-25
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    1 KSEAERWAAEDSKGKAEAKCQVLERTADRLEGDLARLTAQVAAGSIDRDAGSRGDSQEVTALKFKAVESQGEIQQLSSKLATLMAEKNALDEQ 279
            K EAER   E+S+ +AEA+C VL+ T +RLEGDLARLTAQVAAGS+D DA   GDSQE+T LKFK VE QGEIQQLSS++++L  EK+ L+E+
Sbjct:  649 KDEAERRVLEESRQEAEARCAVLQDTTNRLEGDLARLTAQVAAGSMDPDAPRGGDSQEITGLKFKVVECQGEIQQLSSRVSSLTEEKSELEER 741
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1178.3677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVQ4_ECTSI6.340e-2564.52Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1178contigM-pyrifera_M_contig1178:16206..17696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue3.6e-22
Seed eggNOG ortholog2880.D7FVQ4
KEGG koko:K10406
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons3
Model size312
Cds size312
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1178.3677.1prot_M-pyrifera_M_contig1178.3677.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1178 16206..17696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.6575837-CDS-M-pyrifera_M_contig1178:16205..163071622815695.6575837-CDS-M-pyrifera_M_contig1178:16205..16307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1178 16206..16307 -
1692277525.8830674-CDS-M-pyrifera_M_contig1178:16205..163071692277525.8830674-CDS-M-pyrifera_M_contig1178:16205..16307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1178 16206..16307 -
1622815695.6748614-CDS-M-pyrifera_M_contig1178:16821..169111622815695.6748614-CDS-M-pyrifera_M_contig1178:16821..16911Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1178 16822..16911 -
1692277525.8977265-CDS-M-pyrifera_M_contig1178:16821..169111692277525.8977265-CDS-M-pyrifera_M_contig1178:16821..16911Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1178 16822..16911 -
1622815695.690283-CDS-M-pyrifera_M_contig1178:17576..176961622815695.690283-CDS-M-pyrifera_M_contig1178:17576..17696Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1178 17577..17696 -
1692277525.9131646-CDS-M-pyrifera_M_contig1178:17576..176961692277525.9131646-CDS-M-pyrifera_M_contig1178:17576..17696Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1178 17577..17696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1178.3677.1

>prot_M-pyrifera_M_contig1178.3677.1 ID=prot_M-pyrifera_M_contig1178.3677.1|Name=mRNA_M-pyrifera_M_contig1178.3677.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
KSEAERWAAEDSKGKAEAKCQVLERTADRLEGDLARLTAQVAAGSIDRDA
GSRGDSQEVTALKFKAVESQGEIQQLSSKLATLMAEKNALDEQIMEANVG
IVS*
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mRNA from alignment at M-pyrifera_M_contig1178:16206..17696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1178.3677.1 ID=mRNA_M-pyrifera_M_contig1178.3677.1|Name=mRNA_M-pyrifera_M_contig1178.3677.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at M-pyrifera_M_contig1178:16206..17696- (Macrocystis pyrifera P11B4 male)
AAGAGCGAAGCCGAGAGATGGGCAGCGGAGGATAGCAAGGGCAAAGCCGA
GGCAAAATGCCAAGTTTTGGAGCGCACCGCGGATCGACTCGAGGGAGATC
TCGCCAGATTAACCGCCCAGGTGAGGACATACCTCTCCTAGTAAGACATA
CCTGTAGGGTGGCATACCCTGTTCCTTAAAAATAGTAAATTACTTGTTCG
AGCATGCACGAGGGCGAGGGTAACGGGCTTTGAGCGAAGTGGTAGGTACT
ATTTAGTACTATTTAGTACTATTTACAGTAGTACCTGGTACCTCTTAACA
ACCCCAACCCCTATTTTCAGTGCGTCAACTTTATGCCTCTTGAAAGGACT
CACGGTGCCTCCTGGAGTGTCTCAAAGCCACGCGACCTCATTCTTACTTG
TTGTATGCCAGTTCTTCGAGGTAAACGCTAGGTAGATAGGATCGTGAGGG
TGCAAGCATGTCTGACTGGCGGGTTAACGCAGGGGAATGATGAAAGCACA
ATATTCCCAGTGCCTTTTGGTGTGGTTGTTAATTACTTTACGCACGGAAT
GCTTTAATTCATTGTGCTATAACAGTGCATAGAAAACCGCAATGGTATTT
GCATGGAGCACATGCCGATTCAGTTGGGAGAGCGCACGTTAATCGGGGGA
CAGCAGAGAGCACTTCGCGCACTCCACAAGCACGCATGCAATTCCAAAGG
CTTCCCGATACGACAATGAACTCCATTTTTAACTTACGCATTCAGTACGC
GTAAGGTTGTGCTGTATTTTATCCTTTGTATGCAGGTGGCGGCTGGGAGT
ATTGATCGGGATGCTGGGAGTAGGGGAGATTCACAGGAAGTCACAGCGTT
GAAATTCAAGGCTGTAGAAAGCCAGGCAAGTTTTCTCAAGCGTTGGACAT
CGCAGCAAGAATGTATCTATGCTAGTCATTCGAACATGCGCCACTTTGTC
GTACCCTTTGGCGTTGATCGCGATGTAGAGAGCCCTTCATGTTGCACGTG
TGACAGTAGGTCTCGCACGCGCACTTGTACATCTTTCACATAGGTATAAT
GTGCAAGTATTGTTCGCGCATCGAGCGTCGAACCACGATTCGATCTGTGC
CTTGGATCTTAGACCAACGCCTCTCACTCGCGTATCGAATTATGTCTCGT
TTAAGGTTATCGCACTCGCGAAAGAGTCTGTTTCGGTGTTAATTCTGGGA
TGCAAACGAGAGAAGAACATATCGAAAACGGTTTTATCCGCGAACGCATG
TTTCTTGCGTCGGACGGCCAAGCCTCTCCAGGTATTGCCTCTTACGAATG
CATGGTCCAGTTTGTCAGCCATAGTAATCATCGCGACGTTGTTTATCGAC
ACTAAACTGGAACACCCCCTGTGCACTGCTACCTTGCAGGGGGAGATCCA
GCAGCTTTCGTCCAAGTTGGCGACCTTGATGGCAGAGAAGAACGCGTTGG
ACGAACAAATTATGGAGGCGAATGTAGGGATAGTCTCATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1178:16206..17696-

>mRNA_M-pyrifera_M_contig1178.3677.1 ID=mRNA_M-pyrifera_M_contig1178.3677.1|Name=mRNA_M-pyrifera_M_contig1178.3677.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig1178:16206..17696- (Macrocystis pyrifera P11B4 male)
AAGAGCGAAGCCGAGAGATGGGCAGCGGAGGATAGCAAGGGCAAAGCCGA
GGCAAAATGCCAAGTTTTGGAGCGCACCGCGGATCGACTCGAGGGAGATC
TCGCCAGATTAACCGCCCAGAAGAGCGAAGCCGAGAGATGGGCAGCGGAG
GATAGCAAGGGCAAAGCCGAGGCAAAATGCCAAGTTTTGGAGCGCACCGC
GGATCGACTCGAGGGAGATCTCGCCAGATTAACCGCCCAGGTGGCGGCTG
GGAGTATTGATCGGGATGCTGGGAGTAGGGGAGATTCACAGGAAGTCACA
GCGTTGAAATTCAAGGCTGTAGAAAGCCAGGTGGCGGCTGGGAGTATTGA
TCGGGATGCTGGGAGTAGGGGAGATTCACAGGAAGTCACAGCGTTGAAAT
TCAAGGCTGTAGAAAGCCAGGGGGAGATCCAGCAGCTTTCGTCCAAGTTG
GCGACCTTGATGGCAGAGAAGAACGCGTTGGACGAACAAATTATGGAGGC
GAATGTAGGGATAGTCTCATAGGGGGAGATCCAGCAGCTTTCGTCCAAGT
TGGCGACCTTGATGGCAGAGAAGAACGCGTTGGACGAACAAATTATGGAG
GCGAATGTAGGGATAGTCTCATAG
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