mRNA_M-pyrifera_M_contig11777.3667.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11777.3667.1
Unique NamemRNA_M-pyrifera_M_contig11777.3667.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11777.3667.1 vs. uniprot
Match: A0A6H5KQI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQI4_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.720e-29
Identity = 64/114 (56.14%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:   67 GMPEEAMSIAERSDALVNFVAGLLATHGWTIVFLAVVWYNCKDAVRRRWRKRQNEQSIKHANRPERRAVLDRERARAVALKQAEAIEAARSHAEENSRKKVQAFSNS--AIKDD 402
            G  E   S+ E SD LV+FVA +LA +GWT +FL +VWYNCKDAV+RR+ K +N++S+  ANRP+RRAVLDRERAR+VA KQA+A+E AR+ AE N+++K+Q+++ +  + KDD
Sbjct:   31 GWVEGVDSVKEASDRLVSFVADVLARYGWTAIFLVIVWYNCKDAVKRRYWKWRNKRSLDDANRPDRRAVLDRERARSVAEKQAQALEDARAAAERNTQQKMQSYARTTTSTKDD 144
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BLAST of mRNA_M-pyrifera_M_contig11777.3667.1 vs. uniprot
Match: D8LTK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK6_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.170e-27
Identity = 63/114 (55.26%), Postives = 86/114 (75.44%), Query Frame = 1 
Query:   67 GMPEEAMSIAERSDALVNFVAGLLATHGWTIVFLAVVWYNCKDAVRRRWRKRQNEQSIKHANRPERRAVLDRERARAVALKQAEAIEAARSHAEENSRKKVQAFSNS--AIKDD 402
            G  E   S  E SD LV+FVA +LA HGWT VFL +VWYNCKDAV+R +RK +N++S+  ANR +RRAVLDRERAR+VA KQA+A+E AR+  E  +++K+Q+++ +  + KDD
Sbjct:   31 GWAEGVDSAKEASDRLVSFVADILARHGWTAVFLVIVWYNCKDAVKRHYRKWRNKRSLDDANRADRRAVLDRERARSVAEKQAQALEDARAAEERRTQQKMQSYARTTTSTKDD 144
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11777.3667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQI4_9PHAE2.720e-2956.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTK6_ECTSI1.170e-2755.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11777contigM-pyrifera_M_contig11777:1013..5558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSelenoprotein S
Ec32 orthologEc-28_003730.1
Exons3
Model size817
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11777.3667.1prot_M-pyrifera_M_contig11777.3667.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11777 1013..5146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.0819404-CDS-M-pyrifera_M_contig11777:1012..12391622815695.0819404-CDS-M-pyrifera_M_contig11777:1012..1239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11777 1013..1239 +
1692277525.5629244-CDS-M-pyrifera_M_contig11777:1012..12391692277525.5629244-CDS-M-pyrifera_M_contig11777:1012..1239Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11777 1013..1239 +
1622815695.0953271-CDS-M-pyrifera_M_contig11777:3547..36921622815695.0953271-CDS-M-pyrifera_M_contig11777:3547..3692Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11777 3548..3692 +
1692277525.574315-CDS-M-pyrifera_M_contig11777:3547..36921692277525.574315-CDS-M-pyrifera_M_contig11777:3547..3692Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11777 3548..3692 +
1622815695.1093051-CDS-M-pyrifera_M_contig11777:5113..51461622815695.1093051-CDS-M-pyrifera_M_contig11777:5113..5146Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11777 5114..5146 +
1692277525.5868924-CDS-M-pyrifera_M_contig11777:5113..51461692277525.5868924-CDS-M-pyrifera_M_contig11777:5113..5146Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11777 5114..5146 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.1189442-UTR-M-pyrifera_M_contig11777:5146..55581622815695.1189442-UTR-M-pyrifera_M_contig11777:5146..5558Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11777 5147..5558 +
1692277525.6021159-UTR-M-pyrifera_M_contig11777:5146..55581692277525.6021159-UTR-M-pyrifera_M_contig11777:5146..5558Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11777 5147..5558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11777.3667.1

>prot_M-pyrifera_M_contig11777.3667.1 ID=prot_M-pyrifera_M_contig11777.3667.1|Name=mRNA_M-pyrifera_M_contig11777.3667.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
MGDADEGAGSEAMRAGDSAGPEGMPEEAMSIAERSDALVNFVAGLLATHG
WTIVFLAVVWYNCKDAVRRRWRKRQNEQSIKHANRPERRAVLDRERARAV
ALKQAEAIEAARSHAEENSRKKVQAFSNSAIKDD*
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mRNA from alignment at M-pyrifera_M_contig11777:1013..5558+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11777.3667.1 ID=mRNA_M-pyrifera_M_contig11777.3667.1|Name=mRNA_M-pyrifera_M_contig11777.3667.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4546bp|location=Sequence derived from alignment at M-pyrifera_M_contig11777:1013..5558+ (Macrocystis pyrifera P11B4 male)
ATGGGCGACGCTGATGAGGGTGCTGGGTCGGAGGCCATGCGTGCTGGCGA
TAGCGCTGGGCCGGAGGGCATGCCGGAAGAGGCCATGAGCATCGCGGAGA
GGAGCGATGCGTTGGTGAACTTCGTGGCAGGCTTGCTGGCGACCCACGGG
TGGACCATTGTGTTTCTGGCGGTTGTGTGGTACAACTGCAAGGATGCGGT
GCGGAGGCGTTGGCGGAAGCGGCAGAAGTGAGAGGCCCCAGCACGCCAGT
GCTCATTTGATGAGGTCAAATAACTATTACGGGGGTCCATAGTTAATAGG
ACCTATGTTATACTTAAAAACCTACATATTTACCTATTTTTACTAACAAC
ATTTGGTCCTAATTACTACTGTATGGTCCCCCGTAATAACAAGTCGGACA
GATGTTCTACGGGTAGATCAGATAGATCATGTATTAATAGATGATATGGT
AACTGCCGTTCCGAGGTGCTGTGCAGCATCCGCGTAGTACTTATATAATC
CAGGAAGCATGCCCTAGGTCATGCAGACCATATCTTCCCCACCAGGCAAC
GTGAGCTGCATCATACAGATCATGCAGATCAGGAAATTATCTATCTATCT
GCCCTGTGTTAGATCCAGACCGTCCTTGAGTGGGGATCGATGGTCTATCC
GGGGTGTTGATAGACTTCGGCACTTTCTGCTCCTCCTGAAGGAAGTCCGG
AAGAACTTTCGATGAAAATGACGATCACTGTAGTATCGGTCACTGCTTGG
TGTAAAGCCAGTGGTCCTTACAGTAGTCGTTACAGCAGGGCTTTCAGCTG
TAGGTAGAGTAGTTATTGCCCGTCTCTTACTGCACCACCTACCTTTGGGG
GGGAAATATACTTGCCATTCGTCTGCTGTGAGTTATTTTTTGCCAGAGAT
CTTCACGGGTCATGAACCGACCCACCGCTGGTGGTCGAGTTAGATCATGT
TTGTGCGGGGTGGAGAACCTTACTCCGCACAAGAAGAATTATCGTACGTA
TCACGTACCAGGTAGTGTTCATGGCAAGGCACCCAGGAGGCAGTTACACA
GTGCCCCCATAGTGCTGTCTCTGGAAGTGGCCACACCGGAAAATACATTC
ACTCATTGAAGCTGTCATCCATATGCAAGTCCGCCTTACCTGTCGATTCC
TGATCGGATGCAGTTCACCCTTTATGCGACTCGCCGAATATCTCGCGGTG
CTTCGCGCTTGGTGCAAGGAATGCCTGCCTGGTTGGTGAAAGCCCGGCGT
GCTCCGTCCCGGCATTGTAGGGGTGCGAAGGTCTATGGTCATACGACTAC
GGCCATGCGTTATATCGAGTAACGGAATGTGCTTCAATAGAAGAGGAGAT
GAGGGAAATAGACGAATGTGACATGGAGGAGTTTGATACACTGAATAGCA
GTGACAAAGCGATAGCTGTCCTGGGAGATAGGTGGTGGCCACAGGCGGCC
AGACAGGAAGGCGATAAGATTGGCAAAACGTTTGTATGTAATATATGGAA
ACAACGTAATGAGCGCCCACCCGTTGGAGGCGTCTCCATTGGGAGTAGGT
ACGGTGCTCCGTCTCGAAAGGGATGCGTGATCAATGGTCAAATGACCAAG
GCAAGCAAACAAATGAGTACGCACCTCCCCCTCTCCCCTTTGTTTCCGTT
TTTTGTTTTTTGTCTATGGCAATACTCGATGCTTCTTACATATATTCCTG
GTACGGTAGACCACTCTGCTCCGAAATATACGTACCTGTTTCATTGAATA
TTTATGTGCTATCGATCCTTAAATTTTGGGACAGGGTGGTAGTATATACT
ATTACGGGGGTCCATAGTAAACAGGACCAAATATTGTTAGTAAAAATACC
AAAATATATAGGTTTTTATGTATGCCATAGGTCCTGTTAACTATAGACCC
CCGTACTATTAAATGCCAGCGAACAGTCAATAAAGCACGCTGTTAATAAC
CGCAGGCCCGAACCACTTGTTCGCTTTTTTTCTTCTTTTTGGTTTTCTCG
TCAAGGCGATACAGTAGTGGTCTGCTGCTGACCTCTGGTCCCTCCACAGT
GTTTGTTGAGTGGTGCCGGCTATATCGCCGGTGAATCGCTAGGCACATAC
CATAGTATAAGATTAACCAGTATGGTACTAATAGTATGCGGAGTAAATAG
TGCCGGTTGGTTGCCACTCATAATGCCGGTATTATAAGCTGGTGCATACA
CTGTACACCGGCACTATAGAGGGACCGGCACTACTATCACGGAGGTCCAT
AGTTAATAGGACCTATGGTATACATAAAAACCTATCTATTTACCTATTTT
TACTGACAATATTTGGTCCTGTTTACTATGGTCCACCGTAATAACTGTAC
ACGTTCGTATTAAAATTTCGTTCGAAATACTATCTACCAACGAACGATCG
ATGAAGCCCACCAACCTTCCGCCAATGCCCCCCCCGCTCTTTGCCCCCCC
GTCCCTTTATCGTCTTTCTTTCTTCGCGCGGCGACACACGATGCCTTTTA
CGCACACGTATGTCCCTGGTACGATGCACCACCAGCGAACAGTCGATCAA
GCACGCCAACAGGCCCGAACGGCGAGCGGTGCTAGACCGTGAGCGCGCGA
GAGCTGTGGCCCTGAAGCAAGCGGAGGCCATCGAGGCGGCGAGGTCACAC
GCGGAAGAAAATTCAAGAAAAAAAGTTCAGGTAAAGACCTATGCCAATGG
AAACGCAAAATTCCCGTAAAGAGCTCCAATTCCAAAGATACCCATCATAA
TTTTTCGGGTACAGATTGCTATGACCACGTTTATTCAAACTGAAAGTTCC
ATACTTTTGGAAAAGCCCGGAAAAATCAATCATGGGGCCGATGTTGGGCC
AAGATCGGCTTGAGAAAAATCCAGGCAGATGTTTGGTTCGAAGCGGCGAG
ATTCCGAGCCCTCGACAGACATCGATCGACAAGGGCAACGACTGCGTCAT
GAATTCTGAACAGAGTGCGCTCGTTAGGGGCTCCGACCCACGCTAGGGTC
ACCGTGTTCACACAATGACCCGTGACATATGGCGGGCGCTGGCCAGGCGT
ATGATAAAAAACAGTTGGCCGCTGGTATGCACAAACAAATAACAAAATTT
CTCGATCCGTCTCAAATGGCAAAAACTAGGTTTCTTTTTCCGAGTTTGGG
AGAAGAGCGTAGGTAGGACGCCGCCGGCAAGCTCTCAGCCCCTAGAACCT
GGATCCGCTTTCTATCTTCGAGGCCGTCATCTACAATCGTTGGCCTTGCC
CGGCACCAAGCGGGTTGGCCGTGGGCTGAGTCTATGTCGAGATCGAAGGT
CTATCGTCGCACGAGCTGATTTTTATCAGCGTGTTGACAATTTGTAAGGA
GAAGAAATAAATCCCGCCGCCTGCAGCCGTTAGAAAAAAAAAAGAAGAAA
AAATCGATTTTTTTTTTTCCTTTTTTTTCCCACGGCCGCGGTACGAGAAT
ATTTTCGGCTGTTTCTTGGAAGCAATCTTTTTGAAAGAAACCTTTTTGAC
TCACGTTTCCATTGGCATAGGTCTTAAATATGTTGTATTTGAGCTGGACT
TCGAGTGTACGTCCTCTGTCCCATTTCACACAATACTGTACGACTTTGAA
GCCTTTTTTGTTTCACGCACCTTTCAAGCTCGAAATGGGTCGCTACTCTT
TGGCGCCACGTAAACTGTAAGATCGCTGTTCGCTCGTGAAATTCTCCGCG
GAGTATTGAGCTTGAGATAGCGCTTATTTAGAGACTTGTCACGAAATCAG
TGTTTTTTTTTTTCGCGGTCGTTAAGAACACCCTAACCATACGGGAGAGC
CAGAGTAATACACACCACTCTGTCCCGAAATACAATCACCATTTTTCTCA
ACAATTAGTGTAAAGCCGGTTCTTATATGATGGGACAGCGTTGTAGTGAG
CAGAATCCACGATGGACCCAAACACTATGTATCTCTACATGTCTAAGCAA
CAACATTTGATTTTGGTCACTACTGTTTTTCCTCCCCTGTAACACTACAC
TGTAAATGTTTCTACCCACCGTTGCCACCCCCGCTCTCGCTCGTCGCTTA
CCTCTCTCCCGCCCCCCCGGCCATGACGATGCCAAAATACACCACCCGAA
GGCCTTCTCCAACTCCGCCATAAAGGATGATTAGGGCCTTGAACTAGAGC
TTGACGGGGGAGATGCATCCACCCGAGAGAGAGAGGCTACTCCAGGTGGT
GCCTACGGTCTCGGGTGATATTAGGGTATGCGCCAGCAGCAGCTGATGGC
GTGAAGGAAGACGAGCACTATTAATAGGATCCGCCATTGAGGAGTTGATG
GCGTTTTGGACGATTTCCGTGTGGACCACTGTGGCCGCCAATATAAGCAT
CGTTTTAACTGTGATGTTGCGATGAAACTGAGCTTAAATTCCCCGTGAGA
GTGGTATCCCGCATGTGATACAAGACCCACCCTGCGACGAATGTCACTGA
TACTATGCACTAGAGCTTTTCTCTTGACAATGGGGAAAGGTGCAAACGCC
GAGCGCTGCGTACTATGGGGAAATATCTCGACGAGATAGATCGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11777:1013..5558+

>mRNA_M-pyrifera_M_contig11777.3667.1 ID=mRNA_M-pyrifera_M_contig11777.3667.1|Name=mRNA_M-pyrifera_M_contig11777.3667.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig11777:1013..5558+ (Macrocystis pyrifera P11B4 male)
ATGGGCGACGCTGATGAGGGTGCTGGGTCGGAGGCCATGCGTGCTGGCGA
TAGCGCTGGGCCGGAGGGCATGCCGGAAGAGGCCATGAGCATCGCGGAGA
GGAGCGATGCGTTGGTGAACTTCGTGGCAGGCTTGCTGGCGACCCACGGG
TGGACCATTGTGTTTCTGGCGGTTGTGTGGTACAACTGCAAGGATGCGGT
GCGGAGGCGTTGGCGGAAGCGGCAGAAATGGGCGACGCTGATGAGGGTGC
TGGGTCGGAGGCCATGCGTGCTGGCGATAGCGCTGGGCCGGAGGGCATGC
CGGAAGAGGCCATGAGCATCGCGGAGAGGAGCGATGCGTTGGTGAACTTC
GTGGCAGGCTTGCTGGCGACCCACGGGTGGACCATTGTGTTTCTGGCGGT
TGTGTGGTACAACTGCAAGGATGCGGTGCGGAGGCGTTGGCGGAAGCGGC
AGAACGAACAGTCGATCAAGCACGCCAACAGGCCCGAACGGCGAGCGGTG
CTAGACCGTGAGCGCGCGAGAGCTGTGGCCCTGAAGCAAGCGGAGGCCAT
CGAGGCGGCGAGGTCACACGCGGAAGAAAATTCAAGAAAAAAAGTTCAGC
GAACAGTCGATCAAGCACGCCAACAGGCCCGAACGGCGAGCGGTGCTAGA
CCGTGAGCGCGCGAGAGCTGTGGCCCTGAAGCAAGCGGAGGCCATCGAGG
CGGCGAGGTCACACGCGGAAGAAAATTCAAGAAAAAAAGTTCAGGCCTTC
TCCAACTCCGCCATAAAGGATGATTAGGCCTTCTCCAACTCCGCCATAAA
GGATGATTAG
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