mRNA_M-pyrifera_M_contig117507.3623.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117507.3623.1
Unique NamemRNA_M-pyrifera_M_contig117507.3623.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117507.3623.1 vs. uniprot
Match: A0A7X5WNX3_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WNX3_9ACTN)

HSP 1 Score: 88.6 bits (218), Expect = 2.000e-21
Identity = 40/63 (63.49%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   25 VLCTDPARAEEWDEWYDAQHLPDMMAAEGFVAGTRWTRAEPRVGTANHLTIYEIAGLSVEEAI 213
            +LC DP R  EWD WYDAQHLPDM+A   FVAG+RW R       ANHLTIYEIAG  + EAI
Sbjct:    1 MLCADPGREAEWDSWYDAQHLPDMLATGVFVAGSRWHREPREPHGANHLTIYEIAGPDLSEAI 63          
BLAST of mRNA_M-pyrifera_M_contig117507.3623.1 vs. uniprot
Match: A0A7V2W1U7_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7V2W1U7_9CHLR)

HSP 1 Score: 60.1 bits (144), Expect = 6.260e-10
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   10 LIVAHVLCTDPARAEEWDEWYDAQHLPDMMAAEGFVAGTRWTRAEPRVGTAN-HLTIYEI 186
            L+ A   C DPAR EE++EWYD  H+PD++A  G ++ TRW  A    G    +L +YE+
Sbjct:    5 LLFAFSDCKDPAREEEFNEWYDNVHIPDILAVPGMISATRWESAHSVEGQRRKYLALYEL 64          
BLAST of mRNA_M-pyrifera_M_contig117507.3623.1 vs. uniprot
Match: A0A846Q5U4_9ARCH (Uncharacterized protein n=1 Tax=Nitrososphaeria archaeon TaxID=2268198 RepID=A0A846Q5U4_9ARCH)

HSP 1 Score: 57.4 bits (137), Expect = 6.920e-9
Identity = 23/69 (33.33%), Postives = 38/69 (55.07%), Query Frame = 1
Query:   10 LIVAHVLCTDPARAEEWDEWYDAQHLPDMMAAE-GFVAGTRWTRAEPRVGTANHLTIYEIAGLSVEEAI 213
            L + H  C  P R +E++EWYD  H+PD++A    F+   R+ +  P  G   ++ IYEI    +++ I
Sbjct:    5 LYIVHTNCKYPERVDEFNEWYDKIHIPDILAGSPDFIRAMRFEKRSPAEGEGKYIAIYEIESEDIDQTI 73          
BLAST of mRNA_M-pyrifera_M_contig117507.3623.1 vs. uniprot
Match: UPI0019343752 (EthD domain-containing protein n=2 Tax=Frankia TaxID=1854 RepID=UPI0019343752)

HSP 1 Score: 55.8 bits (133), Expect = 2.230e-8
Identity = 24/76 (31.58%), Postives = 40/76 (52.63%), Query Frame = 1
Query:    1 PTGLIVAHVLCTDPARAEEWDEWYDAQHLPDMMAAEGFVAGTRWTRAEPR-----VGTANHLTIYEIAGLSVEEAI 213
            P G+++ H     P R +E++ WYD +HLP+M+A  GF A  R+   +         T  +L IYE+    ++ A+
Sbjct:    2 PRGIMIVHSSPASPEREDEFNRWYDEEHLPEMLACAGFTAARRYRLRDAGPIKAPASTPGYLAIYEVEADDLDAAM 77          
BLAST of mRNA_M-pyrifera_M_contig117507.3623.1 vs. uniprot
Match: A0A847EIJ1_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidales bacterium TaxID=2026733 RepID=A0A847EIJ1_9CHLR)

HSP 1 Score: 55.5 bits (132), Expect = 4.160e-8
Identity = 23/60 (38.33%), Postives = 35/60 (58.33%), Query Frame = 1
Query:   31 CTDPARAEEWDEWYDAQHLPDMMAAEGFVAGTRWTRAEPRV-GTANHLTIYEIAGLSVEE 207
            C DPAR +E+++WY   H+PDM+   G +  TRW  AE +  G    L++YE     ++E
Sbjct:   12 CKDPAREDEYNDWYSNTHIPDMIEVPGMIRATRWEAAEEKENGIRKFLSLYEFETDDLDE 71          
BLAST of mRNA_M-pyrifera_M_contig117507.3623.1 vs. uniprot
Match: A0A536YVZ7_9PROT (Uncharacterized protein n=3 Tax=Bacteria TaxID=2 RepID=A0A536YVZ7_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 1.390e-7
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   37 DPARAEEWDEWYDAQHLPDMMAAEGFVAGTRWTRAEPRVGTANHLTIYEIAGLSV 201
            +PA A E DEW+  +HLP+ +A +GF+ G+RW   E   G   +L +YE+A L+V
Sbjct:   14 EPAAAVEHDEWHTREHLPERLAIDGFLRGSRWRALE---GLPRYLVVYEVAELAV 65          
BLAST of mRNA_M-pyrifera_M_contig117507.3623.1 vs. uniprot
Match: UPI0013B73C5F (hypothetical protein n=1 Tax=Gordonia hankookensis TaxID=589403 RepID=UPI0013B73C5F)

HSP 1 Score: 52.4 bits (124), Expect = 4.730e-7
Identity = 23/70 (32.86%), Postives = 41/70 (58.57%), Query Frame = 1
Query:    1 PTGLIVAHVLCTDPARAEEWDEWYDAQHLPDMMAAEGFVAGTRWTRAEPRVGTANHLTIYEIAGLSVEEA 210
            P G+++     + P RAEE+ +WYD  H+P+++  +GFV+G R     P       +++YEI G  +++A
Sbjct:    2 PKGILMVEGRPSSPDRAEEFGQWYDEVHMPEVLKLDGFVSGRR---LRPIDDDGTLVSLYEIDGSDLKDA 68          
BLAST of mRNA_M-pyrifera_M_contig117507.3623.1 vs. uniprot
Match: A0A365H0T5_9ACTN (Uncharacterized protein n=1 Tax=Actinomadura craniellae TaxID=2231787 RepID=A0A365H0T5_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 4.930e-7
Identity = 25/61 (40.98%), Postives = 36/61 (59.02%), Query Frame = 1
Query:    7 GLIVAHVLCTDPARAEEWDEWYDAQHLPDMMAAEGFVAGTRW-TRAEPRVGTANHLTIYEI 186
            GL+V      +PAR +E+++WYD  HLP ++A  GFVA  R+  R+        +L IYEI
Sbjct:    4 GLMVVQSGPIEPAREDEYNDWYDNTHLPQVLAVPGFVAARRYRARSGADPALPGYLAIYEI 64          
BLAST of mRNA_M-pyrifera_M_contig117507.3623.1 vs. uniprot
Match: X0T8A9_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0T8A9_9ZZZZ)

HSP 1 Score: 52.4 bits (124), Expect = 5.040e-7
Identity = 21/61 (34.43%), Postives = 33/61 (54.10%), Query Frame = 1
Query:    7 GLIVAHVLCTDPARAEEWDEWYDAQHLPDMMAAEGFVAGTRWTR-AEPRVGTANHLTIYEI 186
              ++    C DP R  E++EWYD  H+PD++   GF + TR+    +P  G    L +YE+
Sbjct:    4 ATVLVFTNCADPTRENEFNEWYDNTHVPDVLETPGFKSCTRYELIGDPGPGQGKFLAVYEV 64          
BLAST of mRNA_M-pyrifera_M_contig117507.3623.1 vs. uniprot
Match: A0A1V2I218_9ACTN (Uncharacterized protein n=1 Tax=Frankia asymbiotica TaxID=1834516 RepID=A0A1V2I218_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 2.370e-6
Identity = 23/75 (30.67%), Postives = 38/75 (50.67%), Query Frame = 1
Query:    7 GLIVAHVLCTDPARAEEWDEWYDAQHLPDMMAAEGFVAGTRW-----TRAEPRVGTANHLTIYEIAGLSVEEAIE 216
            G+++       P   +E++ WYD  HLPD++   GFVA  R+     +R     G   +L IYEI    ++ A++
Sbjct:    4 GIMLVQASPASPELEDEFNRWYDEDHLPDLLTTPGFVAARRFRLREGSRGPAADGAPRYLAIYEIEADDLDAALQ 78          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117507.3623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WNX3_9ACTN2.000e-2163.49Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A7V2W1U7_9CHLR6.260e-1043.33Uncharacterized protein n=1 Tax=Dehalococcoidia ba... [more]
A0A846Q5U4_9ARCH6.920e-933.33Uncharacterized protein n=1 Tax=Nitrososphaeria ar... [more]
UPI00193437522.230e-831.58EthD domain-containing protein n=2 Tax=Frankia Tax... [more]
A0A847EIJ1_9CHLR4.160e-838.33Uncharacterized protein n=1 Tax=Dehalococcoidales ... [more]
A0A536YVZ7_9PROT1.390e-743.64Uncharacterized protein n=3 Tax=Bacteria TaxID=2 R... [more]
UPI0013B73C5F4.730e-732.86hypothetical protein n=1 Tax=Gordonia hankookensis... [more]
A0A365H0T5_9ACTN4.930e-740.98Uncharacterized protein n=1 Tax=Actinomadura crani... [more]
X0T8A9_9ZZZZ5.040e-734.43Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A1V2I218_9ACTN2.370e-630.67Uncharacterized protein n=1 Tax=Frankia asymbiotic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117507contigM-pyrifera_M_contig117507:122..337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.0342898-CDS-M-pyrifera_M_contig117507:121..3371622815693.0342898-CDS-M-pyrifera_M_contig117507:121..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117507 122..337 +
1692277524.587966-CDS-M-pyrifera_M_contig117507:121..3371692277524.587966-CDS-M-pyrifera_M_contig117507:121..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117507 122..337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117507.3623.1prot_M-pyrifera_M_contig117507.3623.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117507 122..337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117507.3623.1

>prot_M-pyrifera_M_contig117507.3623.1 ID=prot_M-pyrifera_M_contig117507.3623.1|Name=mRNA_M-pyrifera_M_contig117507.3623.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
PTGLIVAHVLCTDPARAEEWDEWYDAQHLPDMMAAEGFVAGTRWTRAEPR
VGTANHLTIYEIAGLSVEEAIE
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mRNA from alignment at M-pyrifera_M_contig117507:122..337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117507.3623.1 ID=mRNA_M-pyrifera_M_contig117507.3623.1|Name=mRNA_M-pyrifera_M_contig117507.3623.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig117507:122..337+ (Macrocystis pyrifera P11B4 male)
CCGACCGGGCTGATCGTCGCCCACGTCCTGTGCACCGATCCGGCTCGGGC CGAGGAATGGGACGAGTGGTACGACGCCCAGCATCTCCCCGACATGATGG CCGCCGAGGGCTTCGTGGCCGGTACTCGCTGGACGCGAGCCGAGCCCCGC GTCGGCACCGCCAACCATCTCACGATCTACGAGATCGCCGGCCTGTCCGT CGAAGAGGCCATCGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117507:122..337+

>mRNA_M-pyrifera_M_contig117507.3623.1 ID=mRNA_M-pyrifera_M_contig117507.3623.1|Name=mRNA_M-pyrifera_M_contig117507.3623.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig117507:122..337+ (Macrocystis pyrifera P11B4 male)
CCGACCGGGCTGATCGTCGCCCACGTCCTGTGCACCGATCCGGCTCGGGC
CGAGGAATGGGACGAGTGGTACGACGCCCAGCATCTCCCCGACATGATGG
CCGCCGAGGGCTTCGTGGCCGGTACTCGCTGGACGCGAGCCGAGCCCCGC
GTCGGCACCGCCAACCATCTCACGATCTACGAGATCGCCGGCCTGTCCGT
CGAAGAGGCCATCGAACCGACCGGGCTGATCGTCGCCCACGTCCTGTGCA
CCGATCCGGCTCGGGCCGAGGAATGGGACGAGTGGTACGACGCCCAGCAT
CTCCCCGACATGATGGCCGCCGAGGGCTTCGTGGCCGGTACTCGCTGGAC
GCGAGCCGAGCCCCGCGTCGGCACCGCCAACCATCTCACGATCTACGAGA
TCGCCGGCCTGTCCGTCGAAGAGGCCATCGAA
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