mRNA_M-pyrifera_M_contig117340.3590.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117340.3590.1
Unique NamemRNA_M-pyrifera_M_contig117340.3590.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117340.3590.1 vs. uniprot
Match: A0A0L0D523_THETB (Phosphatidylserine synthase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D523_THETB)

HSP 1 Score: 80.1 bits (196), Expect = 1.060e-14
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    4 RQVLSQLGPHHFVSYRWRVFAGWKQFLSVVFLLLFFMGFELSAFTLKAILEVPSESSVNAVRLVILWALAIPALHEWYMYVTTPAANRLGQNAWLAFAICAAELLFAAKHG 336
            ++   Q  P  +  YRW  F+  K+F  V+ +++F    EL AF LK +L +P    +N +RL + W +A+PAL E+Y +VT P   R G   W+A A    ELL   K G
Sbjct:  263 QRAALQFTPERWTVYRWEAFSSLKRFSYVIVVIIFIEVNELCAFFLKTLLWIPPPHPINPLRLFVWWLIALPALREFYEFVTNPKCKRFGAQLWVAAAGILLELLLVIKFG 373          
BLAST of mRNA_M-pyrifera_M_contig117340.3590.1 vs. uniprot
Match: A0A6A5C506_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C506_NAEFO)

HSP 1 Score: 78.6 bits (192), Expect = 4.300e-14
Identity = 49/153 (32.03%), Postives = 75/153 (49.02%), Query Frame = 1
Query:    4 RQVLSQLGPHHFVSYRWRVFAGWKQFLSVVFLLLFFMGFELSAFTLKAILEVPSESSVNAVRLVILWALAIPALHEWYMYVTTPAANRLGQNAWLAFAICAAELLFAAKHGSSLNFWAPEGKELPQVFHFRRPVLAGWPLFVGIGAVWAILRF 462
            +++  Q  P ++ SY W +F   K FL    ++L     +L+AF LK +L VP  + +N  RL+I + L +PA+ E+Y Y++ P   R+G N W+A  I   E+L        + F   EG  L     F   +   W LF  I   W I+ F
Sbjct:  296 KRIFQQFTPFNWTSYDWHIFDDAKHFLYFCAIVLAMNIVDLNAFFLKYVLWVPPPNKLNVYRLLIWFCLGMPAIREYYQYISDPNTKRIGANTWIAIGIIFTEIL--------VYFKFSEGYYL---IPFPHHIWVNWVLFFMIIIPWFIVFF 437          
BLAST of mRNA_M-pyrifera_M_contig117340.3590.1 vs. uniprot
Match: D2W283_NAEGR (Phosphatidylserine synthase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2W283_NAEGR)

HSP 1 Score: 75.9 bits (185), Expect = 3.740e-13
Identity = 47/153 (30.72%), Postives = 74/153 (48.37%), Query Frame = 1
Query:    4 RQVLSQLGPHHFVSYRWRVFAGWKQFLSVVFLLLFFMGFELSAFTLKAILEVPSESSVNAVRLVILWALAIPALHEWYMYVTTPAANRLGQNAWLAFAICAAELLFAAKHGSSLNFWAPEGKELPQVFHFRRPVLAGWPLFVGIGAVWAILRF 462
            ++++ Q  P ++ SY W +F   K FL    ++L     +L+AF LK +L VP  + +N  RL+I + L +PA+ E+Y +++ P   R+G N W+A  I   E+L        + F   EG  L     F   +   W LF      W I  F
Sbjct:  279 KRIVQQFTPFNWTSYNWHIFDDAKHFLYFCLIILAMNIVDLNAFFLKYVLWVPPPNKLNIYRLLIWFCLGMPAIREYYQFISDPNTKRIGANTWIAIGIIFTEIL--------VYFKFSEGYYL---IPFPPHIWVNWLLFFFFFVPWFISFF 420          
BLAST of mRNA_M-pyrifera_M_contig117340.3590.1 vs. uniprot
Match: A0A836CG66_9STRA (Phosphatidylserine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG66_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.860e-13
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    4 RQVLSQLGPHHFVSYRWRVFAGWKQFLSVVFLLLFFMGFELSAFTLKAILEVPSESSVNAVRLVILWALAIPALHEWYMYVTTPAANRLGQNAWLAFAICAAELL 318
            ++ + Q  P  +  + W  F  +K+F  ++ +++  +  EL+AF +   L+VP  S  N VRL I++ + +PA+ E+Y Y+T    +RLGQNAWL  AI   E L
Sbjct:  316 QRAVLQFSPFSWRKWEWGTFTTFKRFCQILGIVIVTLATELNAFMMLNALDVPKTSMYNVVRLAIIFLVGLPAVSEYYEYITNARCSRLGQNAWLMLAIFQVETL 420          
BLAST of mRNA_M-pyrifera_M_contig117340.3590.1 vs. uniprot
Match: A0A067MK65_9AGAM (Uncharacterized protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MK65_9AGAM)

HSP 1 Score: 73.9 bits (180), Expect = 1.680e-12
Identity = 40/116 (34.48%), Postives = 66/116 (56.90%), Query Frame = 1
Query:    7 QVLSQLGPHHFVSYRWRVFAGWKQFLSVVFLLLFFMGFELSAFTLKAILEVPSESSVNAVRLVILWALAIPALHEWYMYVT-TPAANRLGQNAWLAFAICAAELLFAAKHGSSLNF 351
            +V  QL PH + ++ W   A +K +LS+V +L+ F+  E++AF LKA+L +  +      RL  ++  A+PA+ E+Y Y+  +    R+GQ++WL  A    ELL   K    L+F
Sbjct:  286 RVFRQLTPHDWTTFHWEGTASFKNYLSIVIILVLFLMAEMNAFYLKALLWMEPDHPFVVARLAGVFICALPAVREFYQYINDSRKLKRMGQHSWLLLATILTELLMIVKWSRDLSF 401          
BLAST of mRNA_M-pyrifera_M_contig117340.3590.1 vs. uniprot
Match: Q57WJ1_TRYB2 (Phosphatidyl serine synthase, putative n=4 Tax=Trypanozoon TaxID=39700 RepID=Q57WJ1_TRYB2)

HSP 1 Score: 68.9 bits (167), Expect = 9.340e-11
Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    4 RQVLSQLGPHHFVSYRWRVFAGWKQFLSVVFLLLFFMGFELSAFTLKAILEVPSESSVNAVRLVILWALAIPALHEWYMYVT-TPAANRLGQNAWLAFAICAAELLFAAKHGSSLNFW 354
            R+ +SQL P   V Y W VF   K+F+  + LL      EL+ FT+K IL +P +  +  +RLV+   LAIPA+ E+Y Y++     N+LG + W++      E++ A K     N++
Sbjct:  228 RRFISQLVPQSLVPYEWNVFLSPKRFVQFLLLLSLMTLQELNTFTVKHILHIPPKHHLVVLRLVMWLFLAIPAVCEYYFYISGLDPTNKLGPSVWVSVVNLLFEVVLAGKLAVEGNYF 345          
BLAST of mRNA_M-pyrifera_M_contig117340.3590.1 vs. uniprot
Match: G0UQ27_TRYCI (Putative phosphatidylserine synthase n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=G0UQ27_TRYCI)

HSP 1 Score: 68.9 bits (167), Expect = 9.760e-11
Identity = 48/146 (32.88%), Postives = 73/146 (50.00%), Query Frame = 1
Query:   28 PHHFVSYRWRVFAGWKQFLSVVFLLLFFMGFELSAFTLKAILEVPSESSVNAVRLVILWALAIPALHEWYMYVTT-PAANRLGQNAWLAFAICAAELLFAAKHGSSLNFWAPEGKELPQVFHFRRPVLAGWPLFVGIGAVWAILRF 462
            P  FV Y W VF   K+FL    LL  F   EL+ FTLK +L +PS+  +   RLV+   LAIPA+ E+Y+Y++   +  +LG  AW++ A    E++   K  +   ++       P   H   P+ A +  F+    +W  L F
Sbjct:  292 PRCFVEYEWNVFLNRKRFLQCCMLLSLFTLNELNTFTLKHMLRIPSKHFLVFGRLVLWGLLAIPAVCEYYIYISGHDSKKKLGPFAWVSLADLFLEVVLVVKLATEGGYFTE-----PAPLHIALPLRASFLFFI----IWFSLYF 428          
BLAST of mRNA_M-pyrifera_M_contig117340.3590.1 vs. uniprot
Match: UPI0004F43484 (phosphatidylserine synthase n=1 Tax=Trypanosoma grayi TaxID=71804 RepID=UPI0004F43484)

HSP 1 Score: 67.8 bits (164), Expect = 2.500e-10
Identity = 48/159 (30.19%), Postives = 74/159 (46.54%), Query Frame = 1
Query:    4 RQVLSQLGPHHFVSYRWRVFAGWKQFLSVVFLLLFFMGFELSAFTLKAILEVPSESSVNAVRLVILWALAIPALHEWYMYVTTP--AANRLGQNAWLAFAICAAELLFAAKHGSSLNFWAPEGKELPQVFHFRRP----VLAGWPLFVGIGAVWAILRF 462
            +++L QLGP  F++Y W VF   K+FL    LL      E++ FT+K IL++PS   +   RL +   +A+P + E+Y Y+ T      R G  AW+       E +   K        A EG       +F+ P    +   W + + I A+W  L F
Sbjct:  308 QRILGQLGPRSFMAYEWNVFHTPKRFLQFAGLLALLFLQEVNCFTMKHILQIPSNHHLVTARLAMWSFIAMPTVREYYEYINTADHKGKRFGTTAWVGLLALLLETILITK-------LAIEGS------YFQEPMPSYIAVPWMVALLIFALWFALFF 453          
BLAST of mRNA_M-pyrifera_M_contig117340.3590.1 vs. uniprot
Match: A0A7S3E6F7_9CHLO (CDP-diacylglycerol--serine O-phosphatidyltransferase n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3E6F7_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 8.270e-9
Identity = 39/139 (28.06%), Postives = 66/139 (47.48%), Query Frame = 1
Query:    4 RQVLSQLGPHHFVSYRWRVFAGWKQFLSVVFLLLFFMGFELSAFTLKAILEVPSESSVNAVRLVILWALAIPALHEWYMYVTT---------------PAANRLGQNAWLAFAICAAELLFAAKHGSSLNF--WAPEGK 369
            +++L Q  P     Y W++ +  K+F   + L  F +  E++AF +K +L +P  + +N  RL + +A+ IPA++E+Y YVT                  +++LG   W+  +    E L   K GS L    W P  K
Sbjct:   65 KRLLLQFTPESVEQYEWKMMSSPKRFAQCIVLAGFCLACEVNAFFMKYVLWIPPRNMLNTYRLFVFFAMVIPAVNEYYYYVTDRDNNDLSSGDMDEDEEGSHKLGVFTWIFLSCTVLEFLIIYKFGSELFSLPWPPHIK 203          
BLAST of mRNA_M-pyrifera_M_contig117340.3590.1 vs. uniprot
Match: UPI001A9D9DA7 (phosphatidylserine synthase 2 isoform X1 n=2 Tax=Marmotini TaxID=337730 RepID=UPI001A9D9DA7)

HSP 1 Score: 57.0 bits (136), Expect = 1.280e-6
Identity = 36/111 (32.43%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    4 RQVLSQLGPHHFVSYRWRVFAGWKQFLSVVFLLLFFMGFELSAFTLKAILEVPSESSVNAVRLVILWALAIPALHEWYMYVTTPAANR-LGQNAWLAFAICAAELLFAAKH 333
            +++  Q  P+ +V + W+  +  +++L+V  ++L F+  EL+ F LK +L +P E  +  +RLV    +   A+ E Y ++     ++ LGQ AWLA AI A ELL   K+
Sbjct:  179 KRIAFQFTPYSWVRFEWKPASSLRRWLAVCGIILVFLLAELNTFYLKFVLWMPPEHYLVLLRLVFFVNVGGVAMREIYDFMDDLKPHKKLGQQAWLAAAITATELLIVVKY 289          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117340.3590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A0L0D523_THETB1.060e-1436.94Phosphatidylserine synthase n=1 Tax=Thecamonas tra... [more]
A0A6A5C506_NAEFO4.300e-1432.03Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
D2W283_NAEGR3.740e-1330.72Phosphatidylserine synthase n=1 Tax=Naegleria grub... [more]
A0A836CG66_9STRA9.860e-1335.24Phosphatidylserine synthase n=1 Tax=Tribonema minu... [more]
A0A067MK65_9AGAM1.680e-1234.48Uncharacterized protein n=1 Tax=Botryobasidium bot... [more]
Q57WJ1_TRYB29.340e-1134.75Phosphatidyl serine synthase, putative n=4 Tax=Try... [more]
G0UQ27_TRYCI9.760e-1132.88Putative phosphatidylserine synthase n=1 Tax=Trypa... [more]
UPI0004F434842.500e-1030.19phosphatidylserine synthase n=1 Tax=Trypanosoma gr... [more]
A0A7S3E6F7_9CHLO8.270e-928.06CDP-diacylglycerol--serine O-phosphatidyltransfera... [more]
UPI001A9D9DA71.280e-632.43phosphatidylserine synthase 2 isoform X1 n=2 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117340contigM-pyrifera_M_contig117340:69..530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue2.8e-15
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.7023
Preferred namePTDSS1
KEGG rclassRC00017,RC02950
KEGG koko:K08729,ko:K08730
KEGG ReactionR07376,R07377
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006659,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0019637,GO:0031984,GO:0042175,GO:0042398,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Phosphatidyl serine synthase
EggNOG OGs3QCPA@4776,KOG2735@1,KOG2735@2759
EC2.7.8.29
COG Functional cat.I
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815691.566731-CDS-M-pyrifera_M_contig117340:68..5301622815691.566731-CDS-M-pyrifera_M_contig117340:68..530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117340 69..530 +
1692277523.9812007-CDS-M-pyrifera_M_contig117340:68..5301692277523.9812007-CDS-M-pyrifera_M_contig117340:68..530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117340 69..530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117340.3590.1prot_M-pyrifera_M_contig117340.3590.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117340 69..530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117340.3590.1

>prot_M-pyrifera_M_contig117340.3590.1 ID=prot_M-pyrifera_M_contig117340.3590.1|Name=mRNA_M-pyrifera_M_contig117340.3590.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
WRQVLSQLGPHHFVSYRWRVFAGWKQFLSVVFLLLFFMGFELSAFTLKAI
LEVPSESSVNAVRLVILWALAIPALHEWYMYVTTPAANRLGQNAWLAFAI
CAAELLFAAKHGSSLNFWAPEGKELPQVFHFRRPVLAGWPLFVGIGAVWA
ILRF
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mRNA from alignment at M-pyrifera_M_contig117340:69..530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117340.3590.1 ID=mRNA_M-pyrifera_M_contig117340.3590.1|Name=mRNA_M-pyrifera_M_contig117340.3590.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig117340:69..530+ (Macrocystis pyrifera P11B4 male)
TGGCGGCAGGTGTTGTCGCAGCTTGGGCCGCACCACTTTGTGAGCTACCG GTGGCGCGTGTTCGCTGGCTGGAAGCAGTTTTTGTCGGTGGTGTTTCTGC TGCTCTTCTTCATGGGCTTTGAGTTGTCTGCGTTCACGCTCAAGGCAATT TTGGAGGTGCCGTCGGAATCCTCGGTGAACGCAGTGCGGTTGGTGATTTT GTGGGCCCTGGCGATTCCTGCATTGCACGAATGGTACATGTACGTGACCA CTCCAGCGGCCAACCGATTGGGTCAGAATGCGTGGCTCGCCTTTGCCATT TGCGCAGCAGAATTGCTTTTTGCGGCAAAACACGGCTCCAGTCTCAACTT TTGGGCCCCTGAAGGCAAGGAGCTGCCCCAAGTGTTCCACTTCCGAAGAC CTGTGCTCGCCGGCTGGCCGCTCTTCGTGGGCATTGGCGCAGTCTGGGCC ATCCTGCGCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117340:69..530+

>mRNA_M-pyrifera_M_contig117340.3590.1 ID=mRNA_M-pyrifera_M_contig117340.3590.1|Name=mRNA_M-pyrifera_M_contig117340.3590.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig117340:69..530+ (Macrocystis pyrifera P11B4 male)
TGGCGGCAGGTGTTGTCGCAGCTTGGGCCGCACCACTTTGTGAGCTACCG
GTGGCGCGTGTTCGCTGGCTGGAAGCAGTTTTTGTCGGTGGTGTTTCTGC
TGCTCTTCTTCATGGGCTTTGAGTTGTCTGCGTTCACGCTCAAGGCAATT
TTGGAGGTGCCGTCGGAATCCTCGGTGAACGCAGTGCGGTTGGTGATTTT
GTGGGCCCTGGCGATTCCTGCATTGCACGAATGGTACATGTACGTGACCA
CTCCAGCGGCCAACCGATTGGGTCAGAATGCGTGGCTCGCCTTTGCCATT
TGCGCAGCAGAATTGCTTTTTGCGGCAAAACACGGCTCCAGTCTCAACTT
TTGGGCCCCTGAAGGCAAGGAGCTGCCCCAAGTGTTCCACTTCCGAAGAC
CTGTGCTCGCCGGCTGGCCGCTCTTCGTGGGCATTGGCGCAGTCTGGGCC
ATCCTGCGCTTCTGGCGGCAGGTGTTGTCGCAGCTTGGGCCGCACCACTT
TGTGAGCTACCGGTGGCGCGTGTTCGCTGGCTGGAAGCAGTTTTTGTCGG
TGGTGTTTCTGCTGCTCTTCTTCATGGGCTTTGAGTTGTCTGCGTTCACG
CTCAAGGCAATTTTGGAGGTGCCGTCGGAATCCTCGGTGAACGCAGTGCG
GTTGGTGATTTTGTGGGCCCTGGCGATTCCTGCATTGCACGAATGGTACA
TGTACGTGACCACTCCAGCGGCCAACCGATTGGGTCAGAATGCGTGGCTC
GCCTTTGCCATTTGCGCAGCAGAATTGCTTTTTGCGGCAAAACACGGCTC
CAGTCTCAACTTTTGGGCCCCTGAAGGCAAGGAGCTGCCCCAAGTGTTCC
ACTTCCGAAGACCTGTGCTCGCCGGCTGGCCGCTCTTCGTGGGCATTGGC
GCAGTCTGGGCCATCCTGCGCTTC
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