mRNA_M-pyrifera_M_contig117267.3571.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117267.3571.1
Unique NamemRNA_M-pyrifera_M_contig117267.3571.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117267.3571.1 vs. uniprot
Match: A0A7S3XMB2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMB2_HETAK)

HSP 1 Score: 56.2 bits (134), Expect = 1.390e-7
Identity = 26/61 (42.62%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    7 TGETTYDRPDASKSQAERDIPPCAWKEYKTKEGKTYYANASTGKSAWTEPEELTAYKKKVA 189
            T ++TY++P+A KS  E+ +PPC WKEY+   G+ YY++ +  +S W EP+EL  +K+++A
Sbjct:  146 TKKSTYEKPEALKSDKEKALPPCKWKEYEAN-GRKYYSDGT--ESLWEEPDELKLHKRRLA 203
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BLAST of mRNA_M-pyrifera_M_contig117267.3571.1 vs. uniprot
Match: A0A7S3XNG3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNG3_HETAK)

HSP 1 Score: 56.2 bits (134), Expect = 2.080e-7
Identity = 26/61 (42.62%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    7 TGETTYDRPDASKSQAERDIPPCAWKEYKTKEGKTYYANASTGKSAWTEPEELTAYKKKVA 189
            T ++TY++P+A KS  E+ +PPC WKEY+   G+ YY++ +  +S W EP+EL  +K+++A
Sbjct:  428 TKKSTYEKPEALKSDKEKALPPCKWKEYEAN-GRKYYSDGT--ESLWEEPDELKLHKRRLA 485
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BLAST of mRNA_M-pyrifera_M_contig117267.3571.1 vs. uniprot
Match: UPI000711FF3B (pre-mRNA-processing factor 40-like a n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711FF3B)

HSP 1 Score: 54.3 bits (129), Expect = 1.010e-6
Identity = 29/77 (37.66%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:    1 QSTGETTYDRPDASKSQAERDIPPCAWKEYKTKEGKTYYANASTGKSAWTEPEELTAYKKKVAXXXXXXGQQPAPAS 231
            Q T   TY +PD  K+ AE+ I  C WKE  T +G  ++ N  T  S W EP+E T YK+++          PA +S
Sbjct:  175 QRTRAVTYQKPDELKTDAEKAIKTCPWKESYTADGHPFWTNLITQVSVWEEPQEYTLYKQELTRIQNSTPSTPATSS 251
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117267.3571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3XMB2_HETAK1.390e-742.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XNG3_HETAK2.080e-742.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI000711FF3B1.010e-637.66pre-mRNA-processing factor 40-like a n=1 Tax=Blast... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117267contigM-pyrifera_M_contig117267:72..302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815690.202284-CDS-M-pyrifera_M_contig117267:71..3021622815690.202284-CDS-M-pyrifera_M_contig117267:71..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117267 72..302 +
1692277523.4210186-CDS-M-pyrifera_M_contig117267:71..3021692277523.4210186-CDS-M-pyrifera_M_contig117267:71..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117267 72..302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117267.3571.1prot_M-pyrifera_M_contig117267.3571.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117267 72..302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117267.3571.1

>prot_M-pyrifera_M_contig117267.3571.1 ID=prot_M-pyrifera_M_contig117267.3571.1|Name=mRNA_M-pyrifera_M_contig117267.3571.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
QSTGETTYDRPDASKSQAERDIPPCAWKEYKTKEGKTYYANASTGKSAWT
EPEELTAYKKKVAAAAAAAGQQPAPAS
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mRNA from alignment at M-pyrifera_M_contig117267:72..302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117267.3571.1 ID=mRNA_M-pyrifera_M_contig117267.3571.1|Name=mRNA_M-pyrifera_M_contig117267.3571.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig117267:72..302+ (Macrocystis pyrifera P11B4 male)
CAGTCCACTGGCGAGACCACCTATGACCGTCCGGACGCGTCCAAGTCACA
GGCCGAGCGGGACATCCCGCCGTGCGCGTGGAAGGAGTACAAGACGAAGG
AGGGCAAGACGTACTACGCAAACGCCAGCACGGGCAAGTCGGCATGGACG
GAGCCGGAGGAGCTGACAGCGTACAAGAAAAAGGTGGCAGCGGCTGCAGC
TGCTGCGGGACAGCAGCCTGCCCCTGCTTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117267:72..302+

>mRNA_M-pyrifera_M_contig117267.3571.1 ID=mRNA_M-pyrifera_M_contig117267.3571.1|Name=mRNA_M-pyrifera_M_contig117267.3571.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig117267:72..302+ (Macrocystis pyrifera P11B4 male)
CAGTCCACTGGCGAGACCACCTATGACCGTCCGGACGCGTCCAAGTCACA
GGCCGAGCGGGACATCCCGCCGTGCGCGTGGAAGGAGTACAAGACGAAGG
AGGGCAAGACGTACTACGCAAACGCCAGCACGGGCAAGTCGGCATGGACG
GAGCCGGAGGAGCTGACAGCGTACAAGAAAAAGGTGGCAGCGGCTGCAGC
TGCTGCGGGACAGCAGCCTGCCCCTGCTTCCCAGTCCACTGGCGAGACCA
CCTATGACCGTCCGGACGCGTCCAAGTCACAGGCCGAGCGGGACATCCCG
CCGTGCGCGTGGAAGGAGTACAAGACGAAGGAGGGCAAGACGTACTACGC
AAACGCCAGCACGGGCAAGTCGGCATGGACGGAGCCGGAGGAGCTGACAG
CGTACAAGAAAAAGGTGGCAGCGGCTGCAGCTGCTGCGGGACAGCAGCCT
GCCCCTGCTTCC
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