mRNA_M-pyrifera_M_contig116740.3468.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116740.3468.1
Unique NamemRNA_M-pyrifera_M_contig116740.3468.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116740.3468.1 vs. uniprot
Match: A0A6I6AHC8_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AHC8_9PLAN)

HSP 1 Score: 357 bits (917), Expect = 9.380e-116
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 1
Query:    1 GDKVLDQAEYLARLKPEHQKVGRLEFLLGDFDQDQKMSFQEYFSTPAVPLGQRRIPDPVIDRVQQLLAMQEKRFRAQKDDIEKQSASEAPETPEKDGSSETKKRLNRVTQLPPGSVFEWNGNRNFSQEKSKLFLEIAYAVRTPQGVLLREPSGRVVNLRLFRHLDTDRNGRLSAGELLPQLQAENK 558
            GDKVLDQAEYLARLKPEHQKVGRLEFLLGDFDQDQKMSF EYFSTPAVPLGQRRIPDPVIDRVQQLLAMQEKRFRAQKDDIEKQSASEAPETPEKDGSSETKKRLNRVTQ PPGSVFEWNGNRNFSQEKSKLFLEIAYAVRTPQGVLLREPSGRVVNLRLFRHLDTDRNGRLSAGELLPQLQAENK
Sbjct:  409 GDKVLDQAEYLARLKPEHQKVGRLEFLLGDFDQDQKMSFHEYFSTPAVPLGQRRIPDPVIDRVQQLLAMQEKRFRAQKDDIEKQSASEAPETPEKDGSSETKKRLNRVTQRPPGSVFEWNGNRNFSQEKSKLFLEIAYAVRTPQGVLLREPSGRVVNLRLFRHLDTDRNGRLSAGELLPQLQAENK 594          
BLAST of mRNA_M-pyrifera_M_contig116740.3468.1 vs. uniprot
Match: A0A518FW02_9PLAN (EF hand n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FW02_9PLAN)

HSP 1 Score: 201 bits (512), Expect = 5.520e-57
Identity = 113/187 (60.43%), Postives = 135/187 (72.19%), Query Frame = 1
Query:    4 DKVLDQAEYLARLKPEHQKVGRLEFLLGDFDQDQKMSFQEYFSTPAVPLGQRRIPDPVIDRVQQLLAMQEKRFRAQKDDIEKQSASEAPETPEKDGSSETKKRLNRVTQLPPGSVFEWN--GNRNFSQEKSKLFLEIAYAVRTPQGVLLREPSGRVVNLRLFRHLDTDRNGRLSAGELLPQLQAENK 558
            D VL+QAEYLA LKPEHQKVGRLEFLL D DQDQKMSF+EYFSTPAVPLGQRRIPDPV DRVQQ L   ++ +R   +D  +Q      +  ++        R N +  L   S  +W+  G+   S+E ++L LEIAYAVRTP+GVLLREP+GRVVN  LFRHLDTD NG+LSA ELLP+L+ ENK
Sbjct:  410 DGVLEQAEYLATLKPEHQKVGRLEFLLSDHDQDQKMSFKEYFSTPAVPLGQRRIPDPVRDRVQQQLEALKESYRQWDNDSNQQLGLLELQQRQRAVRDLRSARSNGIPGLERTSFLDWDRDGDGQISREDAQLLLEIAYAVRTPEGVLLREPTGRVVNWMLFRHLDTDHNGQLSAAELLPRLETENK 596          
BLAST of mRNA_M-pyrifera_M_contig116740.3468.1 vs. uniprot
Match: A0A2D5GW83_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2D5GW83_9PLAN)

HSP 1 Score: 158 bits (400), Expect = 1.470e-41
Identity = 95/191 (49.74%), Postives = 122/191 (63.87%), Query Frame = 1
Query:    4 DKVLDQAEYLARLKPEHQKVGRLEFLLGDFDQDQKMSFQEYFSTPAVPLGQRRIPDPVIDRVQQLLAMQEKRFRAQKDDIEKQSASEAPETPEKDGSSETKKRLNRVTQLPPG----SVFEWNGNRN--FSQEKSKLFLEIAYAVRTPQGVLLREPSGRVVNLRLFRHLDTDRNGRLSAGELLPQLQAENK 558
            D VLDQAEYLA LKPEHQ+VGR +FL+ D +Q+ +M F EY +TP+V L QR  PDPV DRVQ+ L +  +RF+    + + Q              SE + R  R+T    G    S  +W+ ++N   SQ++ +L LEIAY VR   G LLREPSGRVVNL LF HLD+D NG+LSAGEL PQL+ E +
Sbjct:   66 DGVLDQAEYLATLKPEHQQVGRRDFLITDQNQNLQMEFNEYHATPSVTLSQRLFPDPVSDRVQEQLTVLLRRFKVSDRNADDQF-------------SEQEFREARITTAISGLAQTSFVDWDRDKNGQISQDEIQLLLEIAYGVRNVDGQLLREPSGRVVNLMLFNHLDSDHNGQLSAGELKPQLKGEQQ 243          
BLAST of mRNA_M-pyrifera_M_contig116740.3468.1 vs. uniprot
Match: UPI0018D6803F (hypothetical protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=UPI0018D6803F)

HSP 1 Score: 143 bits (360), Expect = 1.930e-36
Identity = 83/186 (44.62%), Postives = 113/186 (60.75%), Query Frame = 1
Query:    1 GDKVLDQAEYLARLKPEHQKVGRLEFLLGDFDQDQKMSFQEYFSTPAVPLGQRRIPDPVIDRVQQLLAMQEKRFRAQKDDIEKQSASEAPETPEKDGSSETKKRLNRVTQLPPGSVFEWNGNRNFSQEKSKLFLEIAYAVRTPQGVLLREPSGRVVNLRLFRHLDTDRNGRLSAGELLPQLQAENK 558
             D  LD+ EYLA LKPEHQKVG+ +F L D + DQ+M F EY  TPAVPL QR+IPDPVIDRV+Q L+                        P+ D +++++  +  +    P  + + + N+  +++  +  L+IAY VRT  G LLREPSGRVVN  LF HLDTD +G+LSAGEL PQ + + +
Sbjct:  188 NDGALDETEYLATLKPEHQKVGQRDFRLYDQNSDQRMEFDEYRGTPAVPLAQRQIPDPVIDRVRQQLST----------------------FPKADQNNDSQLSIEELKAAFP-ELADQHNNKPVARDDLQRLLDIAYGVRTLDGQLLREPSGRVVNWMLFTHLDTDHSGQLSAGELKPQFKQDQQ 350          
BLAST of mRNA_M-pyrifera_M_contig116740.3468.1 vs. uniprot
Match: A0A517RK67_9PLAN (EF hand n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RK67_9PLAN)

HSP 1 Score: 143 bits (360), Expect = 3.910e-36
Identity = 83/186 (44.62%), Postives = 113/186 (60.75%), Query Frame = 1
Query:    1 GDKVLDQAEYLARLKPEHQKVGRLEFLLGDFDQDQKMSFQEYFSTPAVPLGQRRIPDPVIDRVQQLLAMQEKRFRAQKDDIEKQSASEAPETPEKDGSSETKKRLNRVTQLPPGSVFEWNGNRNFSQEKSKLFLEIAYAVRTPQGVLLREPSGRVVNLRLFRHLDTDRNGRLSAGELLPQLQAENK 558
             D  LD+ EYLA LKPEHQKVG+ +F L D + DQ+M F EY  TPAVPL QR+IPDPVIDRV+Q L+                        P+ D +++++  +  +    P  + + + N+  +++  +  L+IAY VRT  G LLREPSGRVVN  LF HLDTD +G+LSAGEL PQ + + +
Sbjct:  466 NDGALDETEYLATLKPEHQKVGQRDFRLYDQNSDQRMEFDEYRGTPAVPLAQRQIPDPVIDRVRQQLST----------------------FPKADQNNDSQLSIEELKAAFP-ELADQHNNKPVARDDLQRLLDIAYGVRTLDGQLLREPSGRVVNWMLFTHLDTDHSGQLSAGELKPQFKQDQQ 628          
BLAST of mRNA_M-pyrifera_M_contig116740.3468.1 vs. uniprot
Match: A0A518IBJ9_9PLAN (Transaldolase/EF-hand domain-containing protein n=2 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IBJ9_9PLAN)

HSP 1 Score: 142 bits (359), Expect = 5.190e-36
Identity = 87/186 (46.77%), Postives = 115/186 (61.83%), Query Frame = 1
Query:    4 DKVLDQAEYLARLKPEHQKVGRLEFLLGDFDQDQKMSFQEYFSTPAVPLGQRRIPDPVIDRVQQLLAMQEKRFRAQKDDIEKQSASEAPETPEKDGSSETKKRLNRVTQLPPG----SVFEWNGNRN--FSQEKSKLFLEIAYAVRTPQGVLLREPSGRVVNLRLFRHLDTDRNGRLSAGELLPQL 543
            D VL QAEYL  L+PEHQK+G+ +FLL D +Q+Q M + EY  TP++PL +R IPDPV DRVQQ L   ++RF  QK D+   +             SE + +  R T   PG    S  +W+ +++   SQ+  +L LEIA+ VR P+G LLREP GRVVN  LFRHLD D N +LS  EL P++
Sbjct:   71 DDVLTQAEYLKTLRPEHQKIGKRDFLLFDRNQNQLMEYDEYLCTPSIPLEERLIPDPVTDRVQQFLNALQQRF--QKGDLNADAQL-----------SEQEFQQARFTATLPGLALTSFTDWDRDQDGQVSQQDIQLLLEIAFGVRAPEGQLLREPGGRVVNWMLFRHLDEDHNNQLSVKELKPRI 243          
BLAST of mRNA_M-pyrifera_M_contig116740.3468.1 vs. uniprot
Match: A0A2E2C773_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C773_9PLAN)

HSP 1 Score: 62.8 bits (151), Expect = 3.650e-8
Identity = 58/184 (31.52%), Postives = 88/184 (47.83%), Query Frame = 1
Query:    4 DKVLDQAEYLARLKPEHQKVGRLEFLLGDFDQDQKMSFQEYFSTP-AVPLGQRR-IPDPVIDRVQQLLAMQEKRFRAQKDDIEKQSASEAPETPEKDGSSETKKRLNRVTQLPPGS-----VFEWNGNRNFSQEKSKLFLEIAYAVRTPQGVLLREPSGRVVNLRLFRHLDTDRNGRLSAGELL 534
            D  L + EYLA++ P      R +F L DFDQ+ K+S QEY + P  +P+ QR  +PDPV D    L A  ++ ++      +  S  +       D   E K        LPP S     V++ + N   +++++   +EIAY +R   G  LR  +GRV+      H D D + +LS  E L
Sbjct:  753 DGSLTEKEYLAKVAPASTAAARRDFHLVDFDQNGKLSKQEYRALPDLLPIEQRGPVPDPVAD----LAATAQRTWQQIFKTADSNSDGQLTYWEWPDDELEQK--------LPPLSKVAFRVWDADQNGKVNRKEADRLIEIAYGMRHITGAPLRSSNGRVMYHSYISHADKDGDHQLSVNEFL 924          
BLAST of mRNA_M-pyrifera_M_contig116740.3468.1 vs. uniprot
Match: UPI00198E0333 (PD40 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI00198E0333)

HSP 1 Score: 56.2 bits (134), Expect = 5.620e-6
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  352 EWNGNRN--FSQEKSKLFLEIAYAVRTPQGVLLREPSGRVVNLRLFRHLDTDRNG 510
            +W+ +R+   S++ +K  L+IA+ VRTP+G LLREP+GRVV+ RLFR    DR G
Sbjct:  140 DWDLDRDQKVSRDDAKQLLDIAFGVRTPEGHLLREPTGRVVDWRLFRGFTLDREG 194          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116740.3468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6I6AHC8_9PLAN9.380e-11698.92Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A518FW02_9PLAN5.520e-5760.43EF hand n=1 Tax=Gimesia panareensis TaxID=2527978 ... [more]
A0A2D5GW83_9PLAN1.470e-4149.74Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
UPI0018D6803F1.930e-3644.62hypothetical protein n=1 Tax=Gimesia alba TaxID=25... [more]
A0A517RK67_9PLAN3.910e-3644.62EF hand n=1 Tax=Gimesia alba TaxID=2527973 RepID=A... [more]
A0A518IBJ9_9PLAN5.190e-3646.77Transaldolase/EF-hand domain-containing protein n=... [more]
A0A2E2C773_9PLAN3.650e-831.52Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
UPI00198E03335.620e-650.91PD40 domain-containing protein n=1 Tax=Planctomyce... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116740contigM-pyrifera_M_contig116740:1..558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.2382224-CDS-M-pyrifera_M_contig116740:0..5581622815684.2382224-CDS-M-pyrifera_M_contig116740:0..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116740 1..558 +
1692277520.5640213-CDS-M-pyrifera_M_contig116740:0..5581692277520.5640213-CDS-M-pyrifera_M_contig116740:0..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116740 1..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116740.3468.1prot_M-pyrifera_M_contig116740.3468.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116740 1..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116740.3468.1

>prot_M-pyrifera_M_contig116740.3468.1 ID=prot_M-pyrifera_M_contig116740.3468.1|Name=mRNA_M-pyrifera_M_contig116740.3468.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
GDKVLDQAEYLARLKPEHQKVGRLEFLLGDFDQDQKMSFQEYFSTPAVPL
GQRRIPDPVIDRVQQLLAMQEKRFRAQKDDIEKQSASEAPETPEKDGSSE
TKKRLNRVTQLPPGSVFEWNGNRNFSQEKSKLFLEIAYAVRTPQGVLLRE
PSGRVVNLRLFRHLDTDRNGRLSAGELLPQLQAENK
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mRNA from alignment at M-pyrifera_M_contig116740:1..558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116740.3468.1 ID=mRNA_M-pyrifera_M_contig116740.3468.1|Name=mRNA_M-pyrifera_M_contig116740.3468.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig116740:1..558+ (Macrocystis pyrifera P11B4 male)
GGCGACAAGGTGCTGGACCAGGCAGAGTACCTGGCGCGGCTCAAGCCCGA GCACCAGAAAGTTGGTCGACTGGAATTCCTGCTCGGCGATTTTGATCAGG ATCAGAAGATGTCATTTCAAGAATACTTCAGCACACCTGCGGTCCCTCTG GGGCAGCGGCGGATACCGGATCCAGTGATAGACCGAGTCCAACAACTGCT GGCTATGCAGGAAAAACGGTTCCGTGCACAGAAGGACGATATCGAGAAGC AGTCCGCTTCAGAAGCCCCCGAAACACCAGAGAAAGACGGTTCATCCGAG ACGAAAAAGCGTTTGAATCGAGTGACGCAGCTCCCTCCCGGGTCTGTTTT TGAATGGAATGGGAATCGTAATTTTTCACAAGAGAAGAGTAAACTGTTCC TGGAAATTGCTTATGCGGTGCGTACGCCCCAAGGCGTGCTGTTGCGTGAG CCTTCGGGGCGGGTGGTGAACCTGAGGCTGTTCCGACATCTGGACACGGA TCGCAACGGTCGACTGAGTGCCGGGGAACTTTTGCCCCAGTTGCAAGCAG AAAACAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116740:1..558+

>mRNA_M-pyrifera_M_contig116740.3468.1 ID=mRNA_M-pyrifera_M_contig116740.3468.1|Name=mRNA_M-pyrifera_M_contig116740.3468.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig116740:1..558+ (Macrocystis pyrifera P11B4 male)
GGCGACAAGGTGCTGGACCAGGCAGAGTACCTGGCGCGGCTCAAGCCCGA
GCACCAGAAAGTTGGTCGACTGGAATTCCTGCTCGGCGATTTTGATCAGG
ATCAGAAGATGTCATTTCAAGAATACTTCAGCACACCTGCGGTCCCTCTG
GGGCAGCGGCGGATACCGGATCCAGTGATAGACCGAGTCCAACAACTGCT
GGCTATGCAGGAAAAACGGTTCCGTGCACAGAAGGACGATATCGAGAAGC
AGTCCGCTTCAGAAGCCCCCGAAACACCAGAGAAAGACGGTTCATCCGAG
ACGAAAAAGCGTTTGAATCGAGTGACGCAGCTCCCTCCCGGGTCTGTTTT
TGAATGGAATGGGAATCGTAATTTTTCACAAGAGAAGAGTAAACTGTTCC
TGGAAATTGCTTATGCGGTGCGTACGCCCCAAGGCGTGCTGTTGCGTGAG
CCTTCGGGGCGGGTGGTGAACCTGAGGCTGTTCCGACATCTGGACACGGA
TCGCAACGGTCGACTGAGTGCCGGGGAACTTTTGCCCCAGTTGCAAGCAG
AAAACAAGGGCGACAAGGTGCTGGACCAGGCAGAGTACCTGGCGCGGCTC
AAGCCCGAGCACCAGAAAGTTGGTCGACTGGAATTCCTGCTCGGCGATTT
TGATCAGGATCAGAAGATGTCATTTCAAGAATACTTCAGCACACCTGCGG
TCCCTCTGGGGCAGCGGCGGATACCGGATCCAGTGATAGACCGAGTCCAA
CAACTGCTGGCTATGCAGGAAAAACGGTTCCGTGCACAGAAGGACGATAT
CGAGAAGCAGTCCGCTTCAGAAGCCCCCGAAACACCAGAGAAAGACGGTT
CATCCGAGACGAAAAAGCGTTTGAATCGAGTGACGCAGCTCCCTCCCGGG
TCTGTTTTTGAATGGAATGGGAATCGTAATTTTTCACAAGAGAAGAGTAA
ACTGTTCCTGGAAATTGCTTATGCGGTGCGTACGCCCCAAGGCGTGCTGT
TGCGTGAGCCTTCGGGGCGGGTGGTGAACCTGAGGCTGTTCCGACATCTG
GACACGGATCGCAACGGTCGACTGAGTGCCGGGGAACTTTTGCCCCAGTT
GCAAGCAGAAAACAAG
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