mRNA_M-pyrifera_M_contig116655.3450.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116655.3450.1
Unique NamemRNA_M-pyrifera_M_contig116655.3450.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116655.3450.1 vs. uniprot
Match: D8LH43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH43_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 7.490e-15
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 FQRGETPDSTSKKLKNLTDEFEIACAAMAKSVSKKGGQAEAVSAYNNAATVLEAYLKGAELDPLGSDTY 207
             ++GETPDS S+ L+ L  +F   C ++ KS+ KKGG+ EA  AY+ A+++L  YL+G ELDPLGSD Y
Sbjct:  181 MKKGETPDSKSRALQQLAQDFGSTCTSIGKSLGKKGGEEEASKAYDKASSILVKYLEGVELDPLGSDVY 249
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116655.3450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH43_ECTSI7.490e-1550.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116655contigM-pyrifera_M_contig116655:209..421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue3e-12
Seed eggNOG ortholog2880.D8LH43
Hectar predicted targeting categoryother localisation
EggNOG OGs2CBGH@1,2SWSR@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000470.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.4478693-CDS-M-pyrifera_M_contig116655:208..4211622815683.4478693-CDS-M-pyrifera_M_contig116655:208..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116655 209..421 -
1692277520.200863-CDS-M-pyrifera_M_contig116655:208..4211692277520.200863-CDS-M-pyrifera_M_contig116655:208..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116655 209..421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116655.3450.1prot_M-pyrifera_M_contig116655.3450.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116655 209..421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116655.3450.1

>prot_M-pyrifera_M_contig116655.3450.1 ID=prot_M-pyrifera_M_contig116655.3450.1|Name=mRNA_M-pyrifera_M_contig116655.3450.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
FQRGETPDSTSKKLKNLTDEFEIACAAMAKSVSKKGGQAEAVSAYNNAAT
VLEAYLKGAELDPLGSDTYK*
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mRNA from alignment at M-pyrifera_M_contig116655:209..421-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116655.3450.1 ID=mRNA_M-pyrifera_M_contig116655.3450.1|Name=mRNA_M-pyrifera_M_contig116655.3450.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig116655:209..421- (Macrocystis pyrifera P11B4 male)
TTCCAGCGCGGGGAGACACCCGACAGCACGTCGAAAAAGCTCAAGAATTT
GACGGACGAGTTCGAGATCGCCTGCGCGGCGATGGCCAAGAGCGTGTCCA
AGAAGGGAGGGCAAGCGGAGGCCGTCAGTGCCTACAACAACGCGGCCACC
GTTCTCGAGGCCTACTTGAAGGGCGCGGAGCTAGACCCCCTCGGCAGCGA
TACTTACAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116655:209..421-

>mRNA_M-pyrifera_M_contig116655.3450.1 ID=mRNA_M-pyrifera_M_contig116655.3450.1|Name=mRNA_M-pyrifera_M_contig116655.3450.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig116655:209..421- (Macrocystis pyrifera P11B4 male)
TTCCAGCGCGGGGAGACACCCGACAGCACGTCGAAAAAGCTCAAGAATTT
GACGGACGAGTTCGAGATCGCCTGCGCGGCGATGGCCAAGAGCGTGTCCA
AGAAGGGAGGGCAAGCGGAGGCCGTCAGTGCCTACAACAACGCGGCCACC
GTTCTCGAGGCCTACTTGAAGGGCGCGGAGCTAGACCCCCTCGGCAGCGA
TACTTACAAGTGATTCCAGCGCGGGGAGACACCCGACAGCACGTCGAAAA
AGCTCAAGAATTTGACGGACGAGTTCGAGATCGCCTGCGCGGCGATGGCC
AAGAGCGTGTCCAAGAAGGGAGGGCAAGCGGAGGCCGTCAGTGCCTACAA
CAACGCGGCCACCGTTCTCGAGGCCTACTTGAAGGGCGCGGAGCTAGACC
CCCTCGGCAGCGATACTTACAAGTGA
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