prot_M-pyrifera_M_contig11655.3443.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig11655.3443.1
Unique Nameprot_M-pyrifera_M_contig11655.3443.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length239
Homology
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BLAST of mRNA_M-pyrifera_M_contig11655.3443.1 vs. uniprot
Match: D8LI19_ECTSI (Circadian RNA-binding protein CHLAMY 1 subunit C1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI19_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 2.000e-89
Identity = 150/232 (64.66%), Postives = 177/232 (76.29%), Query Frame = 0 
Query:    9 VDHSVIKKWVLEVATRKRRTTLDEIARYFHGRVDTDVIDSYMEVFGNNCRDTVVQCAEFLNIVVPPVREEAEEGVNDELVAGAFAARERVKQGDYDFVEHPLERRANEAKQNDCKDLKVLQAILDEAKGQPGLAGVRKMLNKMVKRIKAVQEEQKLLRKEQTHGMKREIS-QKLHPAYANKEQTFTSFQPPNISFDKEPDAVIDIPPNIVGWIIGKAGVRINELQQRTKAAV 239
            +DHSVIK WVLEVA+R+   T DEI RYFHGRVD DVID Y E F N+ R TV+QCAEFLNI VPP  EE E+ +N ELVAGAF A+ER K GDY   EHPLERRANEAKQNDCKDL VL AIL EA G+ GL  ++KM+ KM+KRI   +EEQK LR +     KRE+S QKLHPAYA+K+ TF+SF P  I  DK PDA++DIPPN+VGW+IGK G RIN++Q +T AA+
Sbjct:    1 MDHSVIKNWVLEVASRRVLATSDEIKRYFHGRVDEDVIDFYNEEFSNS-RATVIQCAEFLNIEVPPEDEEEEDDINSELVAGAFGAKERTKHGDYSAFEHPLERRANEAKQNDCKDLNVLNAILQEAHGEVGLGKMKKMIKKMIKRINETREEQKQLRTQSLLKPKREVSSQKLHPAYASKKPTFSSFAPSTIP-DKVPDAMLDIPPNVVGWVIGKNGARINDIQSKTNAAM 230
[Close]
BLAST of mRNA_M-pyrifera_M_contig11655.3443.1 vs. uniprot
Match: A0A6H5KMM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM6_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 1.050e-81
Identity = 154/272 (56.62%), Postives = 181/272 (66.54%), Query Frame = 0 
Query:    4 PGLLVVDHSVIKKWVLEVATRKRRTTLDEIARYFHGRVDTDVIDSYMEVFGNNCRDTVVQCAEFLNIVVPP---------VREEAEEG--------------------------VNDELVAGAFAARERVKQGDYDFVEHPLERRANEAKQNDCKDLKVLQAILDEAKGQPGLAGVRKMLNKMVKRIKAVQEEQKLLRKEQTHGMKREIS-QKLHPAYANKEQTFTSFQPPNISFDKEPDAVIDIPPNIVGWIIGKAGVRINELQQRTKAAV 239
            P    +DHSVIK+WVLEVA+R+   T DEI RYFHGRVD DVID Y E F +NCR TV+QCAEFLNI VPP          RE  ++G                          +N ELVAGAF A+ER K GDY   EHPLERRANEAKQNDCKDL VL AIL EA G+ GL  ++KM+ KMVKRI   +EEQK LR +     KRE+S QKLHPAYA+KE TF+SF P  I  DK PDA++DIPPN+VGW+IGK G RIN++Q +T AA+
Sbjct:  395 PSTSEMDHSVIKEWVLEVASRRVLATPDEIKRYFHGRVDEDVIDFYNEEF-SNCRATVIQCAEFLNIEVPPDDQISRGDLKREPEDQGARGGGVXXXXXXXXXXXXXXXXXXXXINSELVAGAFGAKERTKHGDYSAFEHPLERRANEAKQNDCKDLNVLNAILQEAHGEVGLGKMKKMIKKMVKRINETREEQKKLRTQSVVKPKREVSAQKLHPAYASKEPTFSSFAPSTIP-DKVPDAMLDIPPNVVGWVIGKNGARINDIQSKTNAAM 664
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11655.3443.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI19_ECTSI2.000e-8964.66Circadian RNA-binding protein CHLAMY 1 subunit C1 ... [more]
A0A6H5KMM6_9PHAE1.050e-8156.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 141..168
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 205..239
score: 10.84
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 206..239
e-value: 2.7E-6
score: 29.2
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 207..238
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 209..238
e-value: 4.7E-6
score: 26.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11655contigM-pyrifera_M_contig11655:2782..9461 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11655.3443.1mRNA_M-pyrifera_M_contig11655.3443.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig11655 2782..9639 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig11655.3443.1 ID=prot_M-pyrifera_M_contig11655.3443.1|Name=mRNA_M-pyrifera_M_contig11655.3443.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=239bp
MGRPGLLVVDHSVIKKWVLEVATRKRRTTLDEIARYFHGRVDTDVIDSYM
EVFGNNCRDTVVQCAEFLNIVVPPVREEAEEGVNDELVAGAFAARERVKQ
GDYDFVEHPLERRANEAKQNDCKDLKVLQAILDEAKGQPGLAGVRKMLNK
MVKRIKAVQEEQKLLRKEQTHGMKREISQKLHPAYANKEQTFTSFQPPNI
SFDKEPDAVIDIPPNIVGWIIGKAGVRINELQQRTKAAV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1