mRNA_M-pyrifera_M_contig116532.3434.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116532.3434.1
Unique NamemRNA_M-pyrifera_M_contig116532.3434.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116532.3434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116532contigM-pyrifera_M_contig116532:184..453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.657963-CDS-M-pyrifera_M_contig116532:183..4381622815682.657963-CDS-M-pyrifera_M_contig116532:183..438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116532 184..438 -
1692277519.7794838-CDS-M-pyrifera_M_contig116532:183..4381692277519.7794838-CDS-M-pyrifera_M_contig116532:183..438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116532 184..438 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.6745799-UTR-M-pyrifera_M_contig116532:438..4531622815682.6745799-UTR-M-pyrifera_M_contig116532:438..453Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116532 439..453 -
1692277519.7887611-UTR-M-pyrifera_M_contig116532:438..4531692277519.7887611-UTR-M-pyrifera_M_contig116532:438..453Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116532 439..453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116532.3434.1prot_M-pyrifera_M_contig116532.3434.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116532 184..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116532.3434.1

>prot_M-pyrifera_M_contig116532.3434.1 ID=prot_M-pyrifera_M_contig116532.3434.1|Name=mRNA_M-pyrifera_M_contig116532.3434.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MEMGPQSLQELYDSWWGEWVRFGYQFFQFVESQVIDFEAFVCALSQARLR
GGQAMKSNAIIWLLSQCLPIEPLKEYFKNDVLVRN
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mRNA from alignment at M-pyrifera_M_contig116532:184..453-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116532.3434.1 ID=mRNA_M-pyrifera_M_contig116532.3434.1|Name=mRNA_M-pyrifera_M_contig116532.3434.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig116532:184..453- (Macrocystis pyrifera P11B4 male)
AACGCGCCTGCCCCCATGGAGATGGGGCCGCAGAGCTTGCAGGAGCTCTA
CGACAGCTGGTGGGGAGAGTGGGTGCGCTTTGGATACCAATTTTTCCAGT
TCGTTGAGTCACAAGTAATCGACTTCGAGGCGTTTGTGTGCGCTCTCTCG
CAAGCTCGTCTGCGAGGCGGCCAGGCGATGAAGTCGAACGCCATCATATG
GTTGCTGAGCCAGTGCCTCCCAATTGAGCCGTTGAAGGAGTACTTCAAGA
ACGATGTGCTCGTGAGGAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116532:184..453-

>mRNA_M-pyrifera_M_contig116532.3434.1 ID=mRNA_M-pyrifera_M_contig116532.3434.1|Name=mRNA_M-pyrifera_M_contig116532.3434.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig116532:184..453- (Macrocystis pyrifera P11B4 male)
ATGGAGATGGGGCCGCAGAGCTTGCAGGAGCTCTACGACAGCTGGTGGGG
AGAGTGGGTGCGCTTTGGATACCAATTTTTCCAGTTCGTTGAGTCACAAG
TAATCGACTTCGAGGCGTTTGTGTGCGCTCTCTCGCAAGCTCGTCTGCGA
GGCGGCCAGGCGATGAAGTCGAACGCCATCATATGGTTGCTGAGCCAGTG
CCTCCCAATTGAGCCGTTGAAGGAGTACTTCAAGAACGATGTGCTCGTGA
GGAACATGGAGATGGGGCCGCAGAGCTTGCAGGAGCTCTACGACAGCTGG
TGGGGAGAGTGGGTGCGCTTTGGATACCAATTTTTCCAGTTCGTTGAGTC
ACAAGTAATCGACTTCGAGGCGTTTGTGTGCGCTCTCTCGCAAGCTCGTC
TGCGAGGCGGCCAGGCGATGAAGTCGAACGCCATCATATGGTTGCTGAGC
CAGTGCCTCCCAATTGAGCCGTTGAAGGAGTACTTCAAGAACGATGTGCT
CGTGAGGAAC
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