mRNA_M-pyrifera_M_contig116457.3427.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116457.3427.1
Unique NamemRNA_M-pyrifera_M_contig116457.3427.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig116457.3427.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.550e-36
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    1 QWPILMPPMKCPLTNAETNWSKRLESVRKDVECFFGVLKGRFRILKLHILYRNKDDIDNMFFCCCILHNMLHAMDGLDKFEEGMDWAGPDGQHD 282
            QW  L+ P K P  + +T +S+ LESVRKDVECFF +LKGRFRILKL + YR+K+DIDN+F  CCILHNMLH  DG+D FEE +DW G  G HD
Sbjct:   11 QWVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFDILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHD 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig116457.3427.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 5.480e-36
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    4 WPILMPPMKCPLTNAETNWSKRLESVRKDVECFFGVLKGRFRILKLHILYRNKDDIDNMFFCCCILHNMLHAMDGLDKFEEGMDWAGPDGQHD 282
            W  L+ P K P  + +T +S+ LESVRKDVECFFG+LKGRFRILKL + YR+K+DIDN+F  CCILHNMLH  DG+D FEE +DW G  G HD
Sbjct:    2 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHD 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig116457.3427.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.480e-35
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 QWPILMPPMKCPLTNAETNWSKRLESVRKDVECFFGVLKGRFRILKLHILYRNKDDIDNMFFCCCILHNMLHAMDGLDKFEEGMDWAGPDGQHD 282
            +W  L+ P K P +N +T +S+ LESVRKDVECFFG+LKGRFRILKL + Y  ++ IDN+FF CCILHNMLH  DGLD F+E  DW G  G HD
Sbjct:   93 EWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFDENTDWTGSAGHHD 186
[Close]
BLAST of mRNA_M-pyrifera_M_contig116457.3427.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.050e-34
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    1 QWPILMPPMKCPLTNAETNWSKRLESVRKDVECFFGVLKGRFRILKLHILYRNKDDIDNMFFCCCILHNMLHAMDGLDKFEEGMDWAGPDGQHD 282
            +W  L+ P K P  + +T +S+ LESVRKDVECFFG+LKGRFRILKL + YR+K DIDN+F+ CCILHNMLH  DG+D FEE +DW G  G HD
Sbjct:  332 KWVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKKDIDNIFYTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHD 425
[Close]
BLAST of mRNA_M-pyrifera_M_contig116457.3427.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.340e-31
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 QWPILMPPMKCPLTNAETNWSKRLESVRKDVECFFGVLKGRFRILKLHILYRNKDDIDNMFFCCCILHNMLHAMDGLDKFEEGMDWAGPDGQH 279
            +W  L+PP K P+   +  +SKRLESVRKDVECFFG++KG FRILKL I Y  ++DIDN+FF CCILHNMLH+ D   + EE  +WAG  G H
Sbjct:   93 KWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLH 185
[Close]
BLAST of mRNA_M-pyrifera_M_contig116457.3427.1 vs. uniprot
Match: A0A6H5JZL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.890e-31
Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    4 WPILMPPMKCPLTNAETNWSKRLESVRKDVECFFGVLKGRFRILKLHILYRNKDDIDNMFFCCCILHNMLHAMDGLDKFEEGMDW 258
            W IL+ P K PL+  +  + KRLESVRKDVECFFG+LKGRFRILKL + Y++++ IDN+FF CCILHNMLH  DG+D+  E  +W
Sbjct:   18 WQILIEPSKYPLSENDLLFLKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNW 102
[Close]
BLAST of mRNA_M-pyrifera_M_contig116457.3427.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 7.350e-31
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    1 QWPILMPPMKCPLTNAETNWSKRLESVRKDVECFFGVLKGRFRILKLHILYRNKDDIDNMFFCCCILHNMLHAMDGLDKFEEGMDWAGPDGQH 279
            +W  L+PP K P+   +  +SKRLESVRKDVECFFG++KGRFRILKL I Y  ++DIDN+FF CCILHNMLH+ D   + EE  +WAG  G H
Sbjct:  334 KWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLH 426
[Close]
BLAST of mRNA_M-pyrifera_M_contig116457.3427.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 8.680e-31
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    1 QWPILMPPMKCPLTNAETNWSKRLESVRKDVECFFGVLKGRFRILKLHILYRNKDDIDNMFFCCCILHNMLHAMDGLDKFEEGMDWA 261
            +W IL+ P K PL+  +  +SKRLESVRKDVECFFG+LKGRFRILKL + Y++++ IDN+FF CCILHNMLH  DG+D+  E  +W 
Sbjct:  181 KWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWV 267
[Close]
BLAST of mRNA_M-pyrifera_M_contig116457.3427.1 vs. uniprot
Match: A0A6H5L2M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M7_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.410e-30
Identity = 51/78 (65.38%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:   49 ETNWSKRLESVRKDVECFFGVLKGRFRILKLHILYRNKDDIDNMFFCCCILHNMLHAMDGLDKFEEGMDWAGPDGQHD 282
            E+ WSK  ESVR+DVECFFG+LKGRFRILKL IL+++K+ IDN+FF CC  HN+LHA DGLD+ E   DW G  G HD
Sbjct:    2 ESKWSKAPESVREDVECFFGILKGRFRILKLGILFQDKNVIDNLFFTCCTSHNVLHAFDGLDELETVEDWGGRAGLHD 79
[Close]
BLAST of mRNA_M-pyrifera_M_contig116457.3427.1 vs. uniprot
Match: A0A6H5JLC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC3_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.640e-30
Identity = 53/94 (56.38%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 QWPILMPPMKCPLTNAETNWSKRLESVRKDVECFFGVLKGRFRILKLHILYRNKDDIDNMFFCCCILHNMLHAMDGLDKFEEGMDWAGPDGQHD 282
            QW  L  P++ P   AE+ + ++LESVRKD EC FGV+KGRFRI K+  LYR K+ IDN+FF C ILHNML A DG++  E   DWAG DG  D
Sbjct:    7 QWKQLQSPIRAPSNKAESGFKRQLESVRKDSECCFGVVKGRFRICKMQFLYRTKERIDNIFFTCIILHNMLLAYDGIELLEPDCDWAGADGDLD 100
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116457.3427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L135_9PHAE2.550e-3662.77Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMK5_9PHAE5.480e-3663.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE2.480e-3561.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5C1_9PHAE3.050e-3462.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE1.340e-3159.14DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JZL5_9PHAE2.890e-3161.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE7.350e-3160.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE8.680e-3160.92DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L2M7_9PHAE3.410e-3065.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLC3_9PHAE4.640e-3056.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116457contigM-pyrifera_M_contig116457:25..306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue3.4e-21
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size282
Cds size267
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.2646585-UTR-M-pyrifera_M_contig116457:24..391622815682.2646585-UTR-M-pyrifera_M_contig116457:24..39Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116457 25..39 +
1692277519.571659-UTR-M-pyrifera_M_contig116457:24..391692277519.571659-UTR-M-pyrifera_M_contig116457:24..39Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116457 25..39 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.278187-CDS-M-pyrifera_M_contig116457:39..3061622815682.278187-CDS-M-pyrifera_M_contig116457:39..306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116457 40..306 +
1692277519.5850804-CDS-M-pyrifera_M_contig116457:39..3061692277519.5850804-CDS-M-pyrifera_M_contig116457:39..306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116457 40..306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116457.3427.1prot_M-pyrifera_M_contig116457.3427.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116457 40..306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116457.3427.1

>prot_M-pyrifera_M_contig116457.3427.1 ID=prot_M-pyrifera_M_contig116457.3427.1|Name=mRNA_M-pyrifera_M_contig116457.3427.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MPPMKCPLTNAETNWSKRLESVRKDVECFFGVLKGRFRILKLHILYRNKD
DIDNMFFCCCILHNMLHAMDGLDKFEEGMDWAGPDGQHD
back to top

mRNA from alignment at M-pyrifera_M_contig116457:25..306+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116457.3427.1 ID=mRNA_M-pyrifera_M_contig116457.3427.1|Name=mRNA_M-pyrifera_M_contig116457.3427.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig116457:25..306+ (Macrocystis pyrifera P11B4 male)
CAGTGGCCGATTCTCATGCCTCCCATGAAGTGCCCCCTCACCAATGCCGA
GACAAACTGGAGCAAGAGGCTAGAAAGCGTGCGGAAAGACGTCGAGTGCT
TTTTCGGCGTCCTGAAAGGCCGCTTCAGGATCCTGAAGCTCCACATCCTG
TACCGCAACAAGGATGACATCGACAACATGTTCTTCTGTTGCTGCATCCT
GCACAACATGCTGCACGCGATGGACGGACTGGACAAGTTCGAAGAGGGCA
TGGACTGGGCGGGGCCGGATGGTCAGCACGAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig116457:25..306+

>mRNA_M-pyrifera_M_contig116457.3427.1 ID=mRNA_M-pyrifera_M_contig116457.3427.1|Name=mRNA_M-pyrifera_M_contig116457.3427.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig116457:25..306+ (Macrocystis pyrifera P11B4 male)
ATGCCTCCCATGAAGTGCCCCCTCACCAATGCCGAGACAAACTGGAGCAA
GAGGCTAGAAAGCGTGCGGAAAGACGTCGAGTGCTTTTTCGGCGTCCTGA
AAGGCCGCTTCAGGATCCTGAAGCTCCACATCCTGTACCGCAACAAGGAT
GACATCGACAACATGTTCTTCTGTTGCTGCATCCTGCACAACATGCTGCA
CGCGATGGACGGACTGGACAAGTTCGAAGAGGGCATGGACTGGGCGGGGC
CGGATGGTCAGCACGATATGCCTCCCATGAAGTGCCCCCTCACCAATGCC
GAGACAAACTGGAGCAAGAGGCTAGAAAGCGTGCGGAAAGACGTCGAGTG
CTTTTTCGGCGTCCTGAAAGGCCGCTTCAGGATCCTGAAGCTCCACATCC
TGTACCGCAACAAGGATGACATCGACAACATGTTCTTCTGTTGCTGCATC
CTGCACAACATGCTGCACGCGATGGACGGACTGGACAAGTTCGAAGAGGG
CATGGACTGGGCGGGGCCGGATGGTCAGCACGAT
back to top